메뉴 건너뛰기




Volumn 983, Issue , 2013, Pages 173-183

Analysis of chromatin organization by deep sequencing technologies

Author keywords

Dictyostelium; Genome wide; High throughput; MNase; Nucleosome mapping

Indexed keywords

DNA; MICROCOCCAL NUCLEASE; TRANSCRIPTION FACTOR;

EID: 84877106000     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-302-2_9     Document Type: Article
Times cited : (3)

References (14)
  • 1
    • 77953310289 scopus 로고    scopus 로고
    • Nucleosome positioning, nucleosome spacing and the nucleosome code
    • Clark DJ (2010) Nucleosome positioning, nucleosome spacing and the nucleosome code. J Biomol Struct Dyn 27:713-894
    • (2010) J Biomol Struct Dyn , vol.27 , pp. 713-894
    • Clark, D.J.1
  • 2
    • 0024604235 scopus 로고
    • The effects of transcription on the nucleosome structure of four Dictyostelium genes
    • Pavlovic J, Banz E, Parish RW (1989) The effects of transcription on the nucleosome structure of four Dictyostelium genes. Nucleic Acids Res 17:2315-2332
    • (1989) Nucleic Acids Res , vol.17 , pp. 2315-2332
    • Pavlovic, J.1    Banz, E.2    Parish, R.W.3
  • 3
    • 0021659729 scopus 로고
    • Site-specific phasing in the chromatin of the rDNA in Dictyostelium discoideum
    • Edwards CA, Firtel RA (1984) Site-specific phasing in the chromatin of the rDNA in Dictyostelium discoideum. J Mol Biol 180: 73-90
    • (1984) J Mol Biol , vol.180 , pp. 73-90
    • Edwards, C.A.1    Firtel, R.A.2
  • 5
    • 79956105128 scopus 로고    scopus 로고
    • Nuclear organization and transcriptional dynamics in Dictyostelium
    • Stevense M, Chubb JR, Muramoto T (2011) Nuclear organization and transcriptional dynamics in Dictyostelium. Develop Growth Diff 53:576-586
    • (2011) Develop Growth Diff , vol.53 , pp. 576-586
    • Stevense, M.1    Chubb, J.R.2    Muramoto, T.3
  • 6
    • 70049107549 scopus 로고    scopus 로고
    • DictyExpress: A Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface
    • Rot G, Parikh A, Curk T, Kuspa A, Shaulsky G, Zupan B (2009) dictyExpress: A Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface. BMC Bioinformatics 10:265
    • (2009) BMC Bioinformatics , vol.10 , pp. 265
    • Rot, G.1    Parikh, A.2    Curk, T.3    Kuspa, A.4    Shaulsky, G.5    Zupan, B.6
  • 7
    • 0029130739 scopus 로고
    • Chromatin structure snap-shots: Rapid nuclease digestion of chromatin in yeast
    • Kent NA, Mellor J (1995) Chromatin structure snap-shots: Rapid nuclease digestion of chromatin in yeast. Nucleic Acids Res 23: 3786-3787
    • (1995) Nucleic Acids Res , vol.23 , pp. 3786-3787
    • Kent, N.A.1    Mellor, J.2
  • 8
    • 79953136775 scopus 로고    scopus 로고
    • Chromatin particle spectrum analysis: A method for comparative chromatin structure analysis using paired-end mode next-generation DNA sequencing
    • Kent NA, Adams S, Moorhouse A, Paszkiewicz K (2010) Chromatin particle spectrum analysis: A method for comparative chromatin structure analysis using paired-end mode next-generation DNA sequencing. Nucleic Acids Res 39:e26
    • (2010) Nucleic Acids Res , vol.39
    • Kent, N.A.1    Adams, S.2    Moorhouse, A.3    Paszkiewicz, K.4
  • 9
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-ef fi cient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-ef fi cient alignment of short DNA sequences to the human genome. Genome Biol 10:R25
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 10
    • 70349739736 scopus 로고    scopus 로고
    • The Integrated Genome Browser: Free software for distribution and exploration of genome-scale datasets
    • Nicol JW, Helt GA, Blanchard SG, Raja A, Loraine AE (2009) The Integrated Genome Browser: Free software for distribution and exploration of genome-scale datasets. Bioinformatics 25:2730-2731
    • (2009) Bioinformatics , vol.25 , pp. 2730-2731
    • Nicol, J.W.1    Helt, G.A.2    Blanchard, S.G.3    Raja, A.4    Loraine, A.E.5
  • 12
    • 9444225935 scopus 로고    scopus 로고
    • Java Treeview - extensible visualization of microarray data
    • Saldanha AJ (2004) Java Treeview - extensible visualization of microarray data. Bioinformatics 20:3246-3248
    • (2004) Bioinformatics , vol.20 , pp. 3246-3248
    • Saldanha, A.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.