Analysis of nanoprobe penetration through a lipid bilayer

Biochimica et Biophysica Acta - Biomembranes

Volumn 1828, Issue 8, 2013, Pages 1667-1673

  Liu, Fei ^a,b   Wu, Dan ^a   Kamm, Roger D ^b   Chen, Ken ^a  

^a TSINGHUA UNIVERSITY   (China)

^b Massachusetts Institute of Technology   (United States)

Author keywords

Interface; Lipid bilayer; Nanoprobe; Nondestructive pattern

Indexed keywords

LIPID; NANOMATERIAL;

ARTICLE; CELL MEMBRANE; HYDROPHILICITY; HYDROPHOBICITY; LIPID BILAYER; LIPID MEMBRANE; LIPID TRANSPORT; MATHEMATICAL ANALYSIS; MEMBRANE DAMAGE; MEMBRANE PERMEABILITY; MOLECULAR DYNAMICS; MOLECULAR PROBE; NANOANALYSIS; NANOPROBE; PRIORITY JOURNAL;

CELL MEMBRANE; HYDROPHOBIC AND HYDROPHILIC INTERACTIONS; LIPID BILAYERS; MOLECULAR DYNAMICS SIMULATION; MOLECULAR PROBES; NANOSTRUCTURES;

EID: 84877018796     PISSN: 00052736     EISSN: 18792642     Source Type: Journal    
DOI: 10.1016/j.bbamem.2013.03.011     Document Type: Article

References (42)

1. P.L. Yeagle Cholesterol and the cell membrane Biochim. Biophys. Acta 822 1985 267 287 (Pubitemid 16196320)
2. A. Verma, O. Uzun, Y. Hu, Y. Hu, H.S. Han, N. Watson, S. Chen, D.J. Irvine, and F. Stellacci Surface-structure-regulated cell-membrane penetration by monolayer-protected nanoparticles Nat. Mater. 7 2008 588 595
3. X.H.N. Xu, W.J. Brownlow, S.V. Kyriacou, Q. Wan, and J.J. Viola Real-time probing of membrane transport in living microbial cells using single nanoparticle optics and living cell imaging Biochemistry 43 2004 10400 10413 (Pubitemid 39079314)
4. A. Pramanik, D. Laha, D. Bhattacharya, P. Pramanik, and P. Karmakar A novel study of antibacterial activity of copper iodide nanoparticle mediated by DNA and membrane damage Colloids Surf. B 96 2012 50 55
5. K.T. Thurn, E.M.B. Brown, A. Wu, S. Vogt, B. Lai, J. Maser, T. Paunesku, and G.E. Woloschak Nanoparticles for applications in cellular imaging Nanoscale Res. Lett. 2 2007 430 441 (Pubitemid 47428890)
6. R. Vácha, F.J. Martinez-Veracoechea, and D. Frenkel Receptor-mediated endocytosis of nanoparticles of various shapes Nano Lett. 11 2011 5391 5395
7. W. Yang, P. Thordarson, J.J. Gooding, S.P. Ringer, and F. Braet Carbon nanotubes for biological and biomedical applications Nanotechnology 18 2007 412001
8. M.G. Schrlau, and H.H. Bau Carbon-based nanoprobes for cell biology Microfluid. Nanofluid. 7 2009 439 450
9. N.W.S. Kam, T.C. Jessop, P.A. Wender, and H. Dai Nanotube molecular transporters: internalization of carbon nanotube-protein conjugates into mammalian cells J. Am. Chem. Soc. 126 2004 6850 6851 (Pubitemid 38855367)
10. A.K. Shalek, J.T. Robinson, E.S. Karp, J.S. Lee, D.R. Ahn, M.H. Yoon, A. Sutton, M. Jorgolli, R.S. Gertner, and T.S. Gujral Vertical silicon nanowires as a universal platform for delivering biomolecules into living cells Proc. Natl. Acad. Sci. U. S. A. 107 2010 1870 1875
11. W. Kim, J.K. Ng, M.E. Kunitake, B.R. Conklin, and P. Yang Interfacing silicon nanowires with mammalian cells J. Am. Chem. Soc. 129 2007 7228 7229 (Pubitemid 46980781)
12. B.D. Almquist, and N.A. Melosh Molecular structure influences the stability of membrane penetrating biointerfaces Nano Lett. 11 2011 2066 2070
13. R.C. Van Lehn, and A. Alexander-Katz Penetration of lipid bilayers by nanoparticles with environmentally-responsive surfaces: simulations and theory Soft Matter 7 2011 11392 11404
14. V.K. Gangupomu, and F.M. Capaldi Interactions of carbon nanotube with lipid bilayer membranes J. Nanomater. 2011 2011 1 6 10.1155/2011/830436 (Article ID 830436)
15. H. Ding, W. Tian, and Y. Ma Designing nanoparticle translocation through membranes by computer simulations ACS Nano 6 2012 1230 1238
16. A.A. Skandani, R. Zeineldin, and M. Al-Haik Effect of chirality and length on the penetrability of single-walled carbon nanotubes into lipid bilayer cell membranes Langmuir 28 2012 7872 7879
17. C. Chipot, and M. Tarek Interaction of a peptide nanotube with a water-membrane interface Phys. Biol. 3 2006 S20
18. E.J. Wallace, and M.S.P. Sansom Carbon nanotube self-assembly with lipids and detergent: a molecular dynamics study Nanotechnology 20 2008 045101
19. B.D. Almquist, P. Verma, W. Cai, and N.A. Melosh Nanoscale patterning controls inorganic-membrane interface structure Nanoscale 3 2010 391 400
20. A. Hultgren, M. Tanase, C. Chen, G. Meyer, and D. Reich Cell manipulation using magnetic nanowires J. Appl. Phys. 93 2003 7554 7556
21. W. Jiang, B.Y.S. Kim, J.T. Rutka, and W.C.W. Chan Nanoparticle-mediated cellular response is size-dependent Nat. Nanotechnol. 3 2008 145 150 (Pubitemid 351355131)
22. A.E. Nel, L. Mädler, D. Velegol, T. Xia, E.M.V. Hoek, P. Somasundaran, F. Klaessig, V. Castranova, and M. Thompson Understanding biophysicochemical interactions at the nano-bio interface Nat. Mater. 8 2009 543 557
23. X. Chen, A. Kis, A. Zettl, and C.R. Bertozzi A cell nanoinjector based on carbon nanotubes Proc. Natl. Acad. Sci. U. S. A. 104 2007 8218 8222 (Pubitemid 47175468)
24. S. Zhang, A. Nelson, and P.A. Beales Freezing or wrapping: the role of particle size in the mechanism of nanoparticle-biomembrane interaction Langmuir 28 2012 12831 12837
25. K. Yang, and Y.Q. Ma Computer simulation of the translocation of nanoparticles with different shapes across a lipid bilayer Nat. Nanotechnol. 5 2010 579 583
26. P.R. Leroueil, S. Hong, A. Mecke, J.R. Baker Jr., B.G. Orr, and M.M. Banaszak Holl Nanoparticle interaction with biological membranes: does nanotechnology present a Janus face? Acc. Chem. Res. 40 2007 335 342
27. M.P. Monopoli, C. Åberg, A. Salvati, and K.A. Dawson Biomolecular coronas provide the biological identity of nanosized materials Nat. Nanotechnol. 7 2012 779 786
28. T. Cedervall, I. Lynch, S. Lindman, T. Berggård, E. Thulin, H. Nilsson, K.A. Dawson, and S. Linse Understanding the nanoparticle-protein corona using methods to quantify exchange rates and affinities of proteins for nanoparticles Proc. Natl. Acad. Sci. U. S. A. 104 2007 2050 2055 (Pubitemid 46391350)
29. D. Walczyk, F.B. Bombelli, M.P. Monopoli, I. Lynch, and K.A. Dawson What the cell "sees" in bionanoscience J. Am. Chem. Soc. 132 2010 5761 5768
30. R. Groot, and K. Rabone Mesoscopic simulation of cell membrane damage, morphology change and rupture by nonionic surfactants Biophys. J. 81 2001 725 736 (Pubitemid 32721448)
31. R. Goetz, and R. Lipowsky Computer simulations of bilayer membranes: self-assembly and interfacial tension J. Chem. Phys. 108 1998 7397 7409 (Pubitemid 128594509)
32. S. Ramachandran, P. Kumar, and M. Laradji Lipid flip-flop driven mechanical and morphological changes in model membranes J. Chem. Phys. 129 2008 125104
33. A. Alexeev, W.E. Uspal, and A.C. Balazs Harnessing Janus nanoparticles to create controllable pores in membranes ACS Nano 2 2008 1117 1122
34. G. Illya, R. Lipowsky, and J. Shillcock Effect of chain length and asymmetry on material properties of bilayer membranes J. Chem. Phys. 122 2005 244901
35. P. Espanol, and P. Warren Statistical mechanics of dissipative particle dynamics Europhys. Lett. 30 1995 191
36. V. Ortiz, S.O. Nielsen, D.E. Discher, M.L. Klein, R. Lipowsky, and J. Shillcock Dissipative particle dynamics simulations of polymersomes J. Phys. Chem. B 109 2005 17708 17714 (Pubitemid 41396222)
37. J.F. Nagle, and S. Tristram-Nagle Structure of lipid bilayers Biochim. Biophys. Acta 1469 2000 159 195
38. L. Gao, J. Shillcock, and R. Lipowsky Improved dissipative particle dynamics simulations of lipid bilayers J. Chem. Phys. 126 2007 015101
39. R.D. Groot, and P.B. Warren Dissipative particle dynamics: bridging the gap between atomistic and mesoscopic simulation J. Chem. Phys. 107 1997 4423
40. Y. Li, T. Yue, K. Yang, and X. Zhang Molecular modeling of the relationship between nanoparticle shape anisotropy and endocytosis kinetics Biomaterials 33 2012 4965 4973
41. D. Bemporad, C. Luttmann, and J. Essex Computer simulation of small molecule permeation across a lipid bilayer: dependence on bilayer properties and solute volume, size, and cross-sectional area Biophys. J. 87 2004 1 13 (Pubitemid 38880059)
42. S.J. Marrink, and H.J.C. Berendsen Permeation process of small molecules across lipid membranes studied by molecular dynamics simulations J. Phys. Chem. 100 1996 16729 16738 (Pubitemid 126788021)