Mapping of the quantitative trait locus (QTL) conferring partial resistance to rice leaf blast disease

Biotechnology Letters

Volumn 35, Issue 5, 2013, Pages 799-810

  Ashkani, S ^a,b   Rafii, M Y ^a   Rahim, H A ^c   Latif, M A ^a,d  

^a UNIVERSITY PUTRA MALAYSIA   (Malaysia)

^b ISLAMIC AZAD UNIVERSITY   (Iran)

^c MALAYSIAN NUCLEAR AGENCY   (Malaysia)

^d BANGLADESH RICE RESEARCH INSTITUTE   (Bangladesh)

Author keywords

Leaf blast; Partial resistance; Quantitative trait locus (QTL); Rice (Oryza sativa); SSR markers

Indexed keywords

CHROMOSOMAL LOCATION; LEAF BLAST; MAPPING POPULATIONS; PHENOTYPIC VARIATIONS; QUANTITATIVE RESISTANCE; QUANTITATIVE TRAIT LOCUS; RICE (ORYZA SATIVA); SSR MARKERS;

CHROMOSOMES; MAPPING;

BLAST RESISTANCE;

MICROSATELLITE DNA;

ARTICLE; CHROMOSOME MAP; DISEASE RESISTANCE; EPISTASIS; GENETICS; MAGNAPORTHE; METHODOLOGY; PHENOTYPE; PLANT DISEASE; PLANT GENE; PLANT LEAF; QUANTITATIVE TRAIT LOCUS; RICE;

CHROMOSOME MAPPING; DISEASE RESISTANCE; EPISTASIS, GENETIC; GENES, PLANT; MAGNAPORTHE; MICROSATELLITE REPEATS; ORYZA SATIVA; PHENOTYPE; PLANT DISEASES; PLANT LEAVES; QUANTITATIVE TRAIT LOCI;

ORYZA SATIVA;

EID: 84876988477     PISSN: 01415492     EISSN: 15736776     Source Type: Journal    
DOI: 10.1007/s10529-012-1130-1     Document Type: Article

References (35)

1. Ahmed NU, Park JI, Jung HJ, Seo MS, Kumar TS, Lee IH, Nou IS (2012) Identification and characterization of stress resistance related genes of Brassica rapa. Biotechnol Lett 34: 979-987. doi: 10. 1007/s10529-012-0860-4.
2. Ashkani S, Rafii MY, Sariah M, Siti Nor Akmar A, Rusli I, Abdul Rahim H, Latif MA (2011) Analysis of simple sequence repeat markers linked with blast disease resistance genes in a segregating population of rice (Oryza sativa L.). Gen Mol Res 10: 1345-1355.
3. Ashkani S, Rafii MY, Rusli I, Meon S, Siti Nor Akmar A, Abdul Rahim H, Latif MA (2012) SSRs for marker assisted selection for blast resistance in rice (Oryza sativae L.). Plant Mol Biol Reprod 30: 79-86.
4. Chen H (2001) Population structure of Pyricularia grisea from central and southern China and comparative mapping of QTL for blast and bacterial blight resistance in rice and barley (in Chinese). Dissertation, Huazhong Agriculture University, Wuhan.
5. Cho YC, Kwon SW, Suh JP, Kim JJ, Lee JH, Roh JH, Oh MK, Kim MK, Ahn SN, Koh HJ (2008) QTL identification and confirmation of field resistance to leaf blast in temperate japonica rice (Oryza sativa L.). J Crop Sci Biotechnol 11: 269-276.
6. Correa-Victoria FJ, Zeigler RS (1993) Pathogenic variability in Pyricularia grisae at a rice blast "hot spot" breeding site in Eastern Colombia. Plant Dis 77: 1029-1035.
7. Couch BC, Kohn LM (2002) A multilocus gene genealogy concordant with host preference indicates segregation of a new species, Magnaporthe oryzae, from M. grisea. Mycologia 94: 683-693.
8. Filippi MC, Prahbu AS (2001) Phenotypic virulence analysis of Pyricularia grisea isolates from Brazilian upland rice cultivars. Pesqui Agropecu Bras 36: 27-35.
9. Fjellstrom R, Conaway-Bormans CA, McClung A, Marchetti MA, Shank AR, Park WD (2004) Development of DNA markers suitable for marker assisted selection of three Pi genes conferring resistance to multiple Pyricularia grisae pathotypes. Crop Sci 44: 1790-1798.
10. Haley CS, Knott SA (1992) A simple regression method for mapping quantitative trait loci in line crosses using flanking markers. Heredity 69: 315-324.
11. IRRI (1996) Standard evaluation system for rice, 4th edn. The international network for genetic evaluation of rice, Genetic Resources Center. International Rice Research Institute, Manila, 52.
12. Koide Y, Kobayashi N, Xu D, Fukuta Y (2009) Resistance genes and selection DNA markers for blast disease in rice (Oryza sativa L.). JARQ 43: 255-280.
13. Koizumi S (2007) Durability of resistance to rice blast disease. A differential system for blast resistance for stable rice production environment. JIRCAS working report, 1-10.
14. Kosambi DD (1994) The estimation of map distance from recombination values. Ann Eugen 12: 172-175.
15. Latif MA, Rafii MY, Rahman MM, Talukdar MRB (2011) Microsatellite and minisatellite markers based DNA fingerprinting and genetic diversity of blast and ufra resistant genotypes. CR Biologies 334: 282-289.
16. Lopez-Gerena L (2006) Mapping QTL controlling durable resistance to rice blast in cultivar Oryza llanos 5. Kansas State University, Kansas.
17. Mackill D, Bonman J (1992) Inheritance of blast resistance in near-isogenic lines of rice. Phytopathology 82: 746-749.
18. Manly KF, Cudmore RH Jr, Meer JM (2001) Map Manager QTX, cross-platform software for genetic mapping. Mamm Genome 12: 930-932.
19. McCouch SR, Cho YG, Yano M, Paul E, Blinstrub M, Morishima H, Kinoshita T (1997) Report on QTL nomenclature. Rice Genet Newsl 14: 11-13.
20. McCouch SR, Teytelman L, Xu Y, Lobos KB, Clare K, Walton M, Fu B, Maghirang R, Li Z, Xing Y, Zhang Q, Kono I, Yano M, Fjellstrom R, DeClerck G, Schneider D, Cartinhour S, Ware D, Stein L (2002) Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.) DNA Res 9: 199-207.
21. Nelson JC (1997) QGENE: software for maker-based genomics analysis and breeding. Mol Breed 3: 239-245.
22. Pan QH, Wang L, Ikehashi H, Tanisaka T (1996) Identification of a new blast resistance gene in the indica rice cultivar Kasalath using Japanese differential cultivars and isozyme markers. Phytopathology 86: 1071-1075.
23. Pessoa-Filho M, Beló A, Alcochete AAN, Rangel PHN, Ferreira ME (2007) A set of multiplex panels of microsatellite markers for rapid molecular characterization of rice accessions. BMC Plant Biol 7: 23.
24. Prabhu AS, Castro EM, Araújo LG, Berni RF (2003) Resistance spectra of six elite breeding lines of upland rice to Pyricularia grisea. Pesqui Agropecu Bras 38: 203-210.
25. Rahim H (2010) Genetic studies on blast disease (Magnaporthe grisea) resistance in Malaysian rice. Universiti Kebangsaan, Selangor.
26. Sallaud C, Lorieux M, Roumen E, Tharreau D, Berruyer R, Svestasrani P, Garsmeur O, Ghesquiere A, Notteghem JL (2003) Identification of five new blast resistance genes in the highly blast-resistant rice variety IR64 using a QTL mapping strategy. Theor Appl Genet 106: 794-803.
27. Sharma TR, Madhav MS, Singh BK, Shanker P, Jana TK, Dalal V, Pandit A, Singh A, Gaikwad K, Upreti HC, Singh NK (2005) High-resolution mapping, cloning and molecular characterization of the Pi-k (h) gene of rice, which confers resistance to Magnaporthe grisea. Mol Genet Genomics 274: 1-10.
28. Sirithunya P, Tragoonrung S, Vanavichit A, Pa-In N, Vongsaprom C, Toojinda T (2002) Quantitative trait loci associated with leaf and neck blast resistance in recombinant inbred line population of rice (Oryza sativa). DNA Res 9: 79-88.
29. Tabien RE, Li Z, Paterson AH, Marchetti MA, Stansel JW, Pinson SRM, Park WD (2000) Mapping of four major rice blast resistance genes from 'Lemont' and 'Teqing' and evaluation of their combinatorial effect for field resistance. Theor Appl Genet 101: 1215-1225.
30. Tabien R, Li Z, Paterson AH, Marchetti MA, Stansel JW, Pinson SRM (2002) Mapping QTLs for field resistance to the rice blast pathogen and evaluating their individual and combined utility in improved varieties. Theor Appl Genet 105: 313-324.
31. Talbot NJ (2003) On the trail of a cereal killer: exploring the biology of Magnaporthe grisea. Annu Rev Microbiol 57: 177-202.
32. Wang G, Ding X, Yuan M, Qiu D, Li X, Xu C, Wang S (2006) Dual function of rice OsDR8 gene in disease resistance and thiamine accumulation. Plant Mol Biol 60: 437-449.
33. Zenbayashi K, Ashizawa T, Tani T, Koizumi S (2002) Mapping of the QTL (quantitative trait locus) conferring partial resistance to leaf blast in rice cultivar Chubu 32. Theor Appl Genet 104: 547-552.
34. Zhou JH, Wang JL, Xu JC, Lei CL, Ling ZZ (2004) Identification and mapping of a rice blast resistance gene Pi-g(t) in the cultivar Guang changzhan. Plant Pathol 53: 191-196.
35. Zhu M, Wang L, Pan QH (2004) Identification and characterization of a new blast resistance gene located on rice chromosome 1 through linkage and differential analyses. Phytopathology 94: 515-519.