SSRs for Marker-Assisted Selection for Blast Resistance in Rice (Oryza sativa L.)

Plant Molecular Biology Reporter

Volumn 30, Issue 1, 2012, Pages 79-86

  Ashkani, Sadegh ^a   Rafii, Mohd Yusop ^a   Rusli, Ibrahim ^b   Sariah, Meon ^a   Abdullah, Siti Nor Akmar ^a   Rahim, Harun Abdul ^b   Latif, M A ^a  

^a UNIVERSITY PUTRA MALAYSIA   (Malaysia)

^b MALAYSIAN NUCLEAR AGENCY   (Malaysia)

Author keywords

F 2 and F 3 population; Marker assisted selection; Resistance gene; Rice (Oryza sativa L.); Rice blast (Magnaporthe oryzae); Simple sequence repeats (SSRs) markers

Indexed keywords

FUNGI; MAGNAPORTHE; MAGNAPORTHE ORYZAE; ORYZA SATIVA;

EID: 84856082135     PISSN: 07359640     EISSN: 15729818     Source Type: Journal    
DOI: 10.1007/s11105-011-0315-4     Document Type: Article

References (39)

1. Akagi H, Yokozeki Y, Inagaki A, Fujimura T (1996) Microsatellite DNA markers for rice chromosomes. Theor Appl Genet 93: 1071-1077.
2. Akama Y (1978) Study on rice breeding technology. A report on TARC/MARDI project 1976-78, Malaysia.
3. Baraket G, Chatti K, Saddoud O, Abdelkarim AB, Mars M, Trifi M (2011) Comparative assessment of SSR and AFLP markers for evaluation of genetic diversity and conservation of fig, Ficus carica L., genetic resources in Tunisia. Plant Mol Biol Rep 29: 171-184.
4. Bonman JM, Khush GS, Nelson RJ (1992) Breeding rice for resistance to pests. Annu Rev Phytopathol 30: 507-528.
5. Campoy JA, Ruiz D, Egea J, Rees DJG, Celton JM, Martínez-Gómez P (2011) Inheritance of flowering time in apricot (Prunus armeniaca L.) and analysis of linked quantitative trait loci (QTLs) using simple sequence repeat (SSR) markers. Plant Mol Biol Rep 29: 404-410.
6. Cantrell RP, Reeves TG (2002) The rice genome: the cereal of the world's poor takes center stage. Science 296: 53.
7. Filippi MC, Prahbu AS (2001) Phenotypic virulence analysis of Pyricularia grisea isolates from Brazilian upland rice cultivars. Pesquisa Agropecuária Brasileira 36: 27-35.
8. Fjellstrom R, Conaway-Bormans CA, McClung A, Marchetti MA, Shank AR, Park WD (2004a) Development of DNA markers suitable for marker assisted selection of three Pi genes conferring resistance to multiple Pyricularia grisae pathotypes. Crop Sci 44: 1790-1798.
9. Fjellstrom R, Conaway-Bormans CA, McClung AM, Marchetti MA, Shank AR, Park WD (2004b) Development of DNA markers suitable for marker assisted selection of three Pi. Genetics 138: 1251-1274.
10. Fjellstrom R, McClung AM, Shank AR (2006) SSR markers closely linked to the Pi-z locus are useful for selection of blast resistance in a broad array of rice germplasm. Mol Breed 17: 149-157.
11. Hittalmani S, Parco A, Mew TW, Zeigler RS, Huang N (2000) Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice. Theor Appl Genet 100: 1121-1128.
12. Huang N, Angeles ER, Domingo J, Magpantay G, Singh S, Zhang Q, Kumaravadivel N, Bennett J, Khush GS (1997) Pyramiding of bacterial resistance genes in rice: marker-aided selection using RFLP and PCR. Theor Appl Genet 95: 313-320.
13. IRRI (1996) Standard evaluation system for rice, 4th edition. The International Network for Genetic Evaluation of Rice, Genetic Resources Center. International Rice Research Institute, Manila, Philippines, 52 p.
14. Jena KK, Mackill DJ (2008) Molecular markers and their use in marker-assisted selection in rice. Crop Sci 48: 1266-1276.
15. Khush GS (2005) What it will take to feed 5. 0 billion rice consumers in 2030. Plant Mol Biol 59: 1-6.
16. Liu G, Lu G, Zeng L, Wang GL (2002) Two broad-spectrum blast resistance genes, Pi9(t) and Pi2(t), are physically linked on rice chromosome 6. Mol Gen Genomics 267: 472-480.
17. Liu SP, Li X, Wang CY, Li XH, He YQ (2003) Improvement of resistance to rice blast in Zhenshan 97 by molecular marker-aided selection. Acta Bot Sin 45: 1346-1350.
18. Liu XQ, Wang L, Chen S, Lin F, Pan QH (2005) Genetic and physical mapping of Pi36 (t), a novel rice blast resistance gene located on rice chromosome 8. Mol Gen Genomics 274: 394-40.
19. Mackill DJ, Bonman JM (1992) Inheritance of blast resistance in near-isogenic lines of rice. Phytopathology 82: 746-749.
20. Mallikarjuna SBP, Sarla N (2010) Meta-analysis of yield QTLS derived from inter-specific crosses of rice reveals consensus regions and candidate genes. Plant Mol Biol Rep doi: 10. 1007/s11105-010-0274-1.
21. McCouch SR, Kochert G, Yu ZH, Wang ZY, Khush GS (1988) Molecular mapping of rice chromosomes. Theor Appl Genet 76: 815-829.
22. McCouch SR, Temnykh S, Lukashova A, Coburn J, DeClerck G, Cartinhour S, Harrington S, Thomson M, Septiningsih E, Semon M, Moncada P, Li J (2001) Microsatellite markers in rice: abundance, diversity, and applications. In: Khush GS, Brar DS, Hardy B (eds) Proceeding of the 4th international rice genetics symposium. Rice genetic IV, IRRI-SPI, pp. 117-135.
23. McCouch SR, Teytelman L, Xu Y, Lobos KB, Clare K, Walton M, Fu B, Maghirang R, Li Z, Xing Y, Zhang Q, Kono I, Yano M, Fjellstrom R, DeClerck G, Schneider D, Cartinhour S, Ware D, Stein L (2002a) Development of 2240 new SSR markers for rice. DNA Res 9: 199-220.
24. McCouch SR, Teytelman L, Xu Y, Lobos KB, Clare K, Walton M, Fu B, Maghirang R, Li Z, Xing Y, Zhang Q, Kono I, Yano M, Fjellstrom R, DeClerck G, Schneider D, Cartinhour S, Ware D, Stein L (2002b) Development of 2240 new SSR markers for rice. DNA Res 9: 199-220.
25. Narayanan NN, Baisakh N, Vera Cruz CM, Gnanamanickam SS, Datta K, Datta SK (2002) Molecular breeding for the development of blast and bacterial blight resistance in rice cv. IR50. Crop Sci 42: 2072-2079.
26. Ribaut JM, Hoisington D (1998) Marker-assisted selection: new tools and strategies. Trends Plant Sci 3: 236-239.
27. Ronald LP, Vasil IK (1994) Mapping population. In: DNA-based markers in plants ed. by PHILIPS RL, VASIL IK, pp. 16.
28. SAS Institute (1989) SAS/STAT user's guide, version 6, 4th edn., vol 1 and 2. SAS Institute, Raleigh, N. C.
29. Sharma RC, Chaudhary NK, Ojha BR, Joshi BK, Pandey MP, Tiwary AK (2005) Genetic diversity and performance of Masuli and its substitute rice cultivars. J Inst Agric Anim Sci 26: 21-30.
30. Swapna M, Sivaraju K, Sharma RK, Singh NK, Mohapatra T (2010) Single-strand conformational polymorphism of EST-SSRs: a potential tool for diversity analysis and varietal identification in Sugarcane. Plant Mol Biol Rep doi: 10. 1007/s11105-010-0254-5.
31. Talbot NJ (2003) On the trail of a cereal killer: exploring the biology of Magnaporthe grisae. Annu Rev Microbiol 57: 177-202.
32. Temnykh S, Park WD, Ayers N, Cartinhour S, Hauck N, Lipovich L, Cho YG, Ishii T, McCouch SR (2000) Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.). Theor Appl Genet 100: 697-712.
33. Toojinda T, Tragoorung S, Vanavichit A, Siangliw JL, Pa-In N, Jantaboon J, Siangliw M, Fukai S (2005) Molecular breeding for rainfed lowland rice in the Mekong region. Plant Prod Sci 8: 330-333.
34. Wang B, Zhu C, Liu X, Wang W, Ding H, Jiang M, Li G, Liu W, Ya F (2010) Fine mapping of qHD4-1, a QTL controlling the heading date, to a 20. 7-kb DNA fragment in rice (Oryza sativa L.), Plant Mol Biol Rep doi: 10. 1007/s11105-010-0278-x.
35. Zhao F, Cai Z, Hu T, Yao H, Wang L, Dong N, Wang B, Ru Z, Zhai W (2010) Genetic analysis and molecular mapping of a novel gene conferring resistance to rice stripe virus. Plant Mol Biol Rep 28: 512-518.
36. Zhou JH, Wang JL, Xu JC, Lei CL, Ling ZZ (2004) Identification and mapping of a rice blast resistance gene Pi-g(t) in the cultivar Guangchangzhan. Plant Pathol 53: 191-196.
37. Zhou E, Jia Y, Correll J, Lee FN (2007) Instability of the Magnaporthe oryzae avirulence gene AVR-Pita alters virulence. Fungal Genet Biol 44: 1024-1034.
38. Zhu M, Wang L, Pan QH (2004) Identification and characterization of a new blast resistance gene located on rice chromosome 1 through linkage and differential analyses. Phytopathology 94: 515-519.
39. Zhu W, Lin J, Yang D, Zhao L, Zhang Y, Zhu Z, Chen T, Wang C (2009) Development of chromosome segment substitution lines derived from backcross between two sequenced rice cultivars, indica recipient 93-11 and japonica donor nipponbare. Plant Mol Biol Rep 27: 126-131.