-
1
-
-
33846995452
-
An estimate of the lower limit of global fungal diversity
-
doi 10.1007/s10531-006-9129-3
-
Schmit J, Mueller G, (2007) An estimate of the lower limit of global fungal diversity. Biodivers Conserv 16: 99-111 doi:10.1007/s10531-006-9129-3.
-
(2007)
Biodivers Conserv
, vol.16
, pp. 99-111
-
-
Schmit, J.1
Mueller, G.2
-
2
-
-
25144516095
-
Fungal community analysis by large-scale sequencing of environmental samples
-
doi 10.1128/AEM.71.9.5544-5550.2005
-
O′Brien HE, Parrent JL, Jackson JA, Moncalvo J-M, Vilgalys R, (2005) Fungal community analysis by large-scale sequencing of environmental samples. Appl Environ Microbiol 71: 5544-5550 doi:10.1128/AEM.71.9.5544-5550.2005.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 5544-5550
-
-
OBrien, H.E.1
Parrent, J.L.2
Jackson, J.A.3
Moncalvo, J.-M.4
Vilgalys, R.5
-
3
-
-
79952741082
-
The Fungi: 1, 2, 3... 5.1 Million Species?
-
doi: 10.3732/ajb.1000298
-
Blackwell M, (2011) The Fungi: 1, 2, 3... 5.1 Million Species? Am J Bot 98: 426-438 doi:10.3732/ajb.1000298.
-
(2011)
Am J Bot
, vol.98
, pp. 426-438
-
-
Blackwell, M.1
-
4
-
-
0003551059
-
Ainsworth & Bisby's Dictionary of the Fungi
-
Kirk PM, Ainsworth GC, (2008) Ainsworth & Bisby's Dictionary of the Fungi. CABI pp. 785 p.
-
(2008)
CABI
, pp. 785
-
-
Kirk, P.M.1
Ainsworth, G.C.2
-
5
-
-
65349088516
-
Progress towards DNA barcoding of fungi
-
Seifert KA, (2009) Progress towards DNA barcoding of fungi. Mol Ecol Resour 9: 83-89.
-
(2009)
Mol Ecol Resour
, vol.9
, pp. 83-89
-
-
Seifert, K.A.1
-
6
-
-
45749142504
-
Intraspecific ITS variability in the kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification
-
Nilsson RH, Kristiansson E, Ryberg M, Hallenberg N, Larsson K-H, (2008) Intraspecific ITS variability in the kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification. Evol Bioinform Online 4: 193-201.
-
(2008)
Evol Bioinform Online
, vol.4
, pp. 193-201
-
-
Nilsson, R.H.1
Kristiansson, E.2
Ryberg, M.3
Hallenberg, N.4
Larsson, K.-H.5
-
7
-
-
80053068046
-
Comparing COI and ITS as DNA barcode markers for mushrooms and allies (Agaricomycotina)
-
doi: 10.1371/journal.pone.0025081
-
Dentinger BTM, Didukh MY, Moncalvo J-M, (2011) Comparing COI and ITS as DNA barcode markers for mushrooms and allies (Agaricomycotina). PLoS ONE 6: e25081 doi:10.1371/journal.pone.0025081.
-
(2011)
PLoS ONE
, vol.6
-
-
Dentinger, B.T.M.1
Didukh, M.Y.2
Moncalvo, J.-M.3
-
8
-
-
84859972408
-
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
-
doi: 10.1073/pnas.1117018109
-
Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, et al. (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc Natl Acad Sci USA 109: 6241-6246 doi:10.1073/pnas.1117018109.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 6241-6246
-
-
Schoch, C.L.1
Seifert, K.A.2
Huhndorf, S.3
Robert, V.4
Spouge, J.L.5
-
9
-
-
77954748234
-
The UNITE database for molecular identification of fungi-recent updates and future perspectives
-
doi: 10.1111/j.1469-8137.2009.03160.x
-
Abarenkov K, Henrik Nilsson R, Larsson K-H, Alexander IJ, Eberhardt U, et al. (2010) The UNITE database for molecular identification of fungi-recent updates and future perspectives. New Phytol 186: 281-285 doi:10.1111/j.1469-8137.2009.03160.x.
-
(2010)
New Phytol
, vol.186
, pp. 281-285
-
-
Abarenkov, K.1
Henrik Nilsson, R.2
Larsson, K.-H.3
Alexander, I.J.4
Eberhardt, U.5
-
10
-
-
78650578953
-
PlutoF-a web based workbench for ecological and taxonomic research, with an online implementation for fungal ITS sequences
-
doi: 10.4137/EBO.S6271
-
Abarenkov K, Tedersoo L, Nilsson RH, Vellak K, Saar I, et al. (2010) PlutoF-a web based workbench for ecological and taxonomic research, with an online implementation for fungal ITS sequences. Evol Bioinform Online 6: 189-196 doi:10.4137/EBO.S6271.
-
(2010)
Evol Bioinform Online
, vol.6
, pp. 189-196
-
-
Abarenkov, K.1
Tedersoo, L.2
Nilsson, R.H.3
Vellak, K.4
Saar, I.5
-
11
-
-
19344366809
-
UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi
-
doi: 10.1111/j.1469-8137.2005.01376.x
-
Kõljalg U, Larsson K-H, Abarenkov K, Nilsson RH, Alexander IJ, et al. (2005) UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi. New Phytol 166: 1063-1068 doi:10.1111/j.1469-8137.2005.01376.x.
-
(2005)
New Phytol
, vol.166
, pp. 1063-1068
-
-
Kõljalg, U.1
Larsson, K.-H.2
Abarenkov, K.3
Nilsson, R.H.4
Alexander, I.J.5
-
12
-
-
57649143377
-
An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity
-
doi: 10.1111/j.1469-8137.2008.02667.x
-
Ryberg M, Kristiansson E, Sjökvist E, Nilsson RH, (2009) An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity. New Phytol 181: 471-477 doi:10.1111/j.1469-8137.2008.02667.x.
-
(2009)
New Phytol
, vol.181
, pp. 471-477
-
-
Ryberg, M.1
Kristiansson, E.2
Sjökvist, E.3
Nilsson, R.H.4
-
13
-
-
61849131758
-
A software pipeline for processing and identification of fungal ITS sequences
-
doi: 10.1186/1751-0473-4-1
-
Nilsson RH, Bok G, Ryberg M, Kristiansson E, Hallenberg N, (2009) A software pipeline for processing and identification of fungal ITS sequences. Source Code Biol Med 4: 1 doi:10.1186/1751-0473-4-1.
-
(2009)
Source Code Biol Med
, vol.4
, pp. 1
-
-
Nilsson, R.H.1
Bok, G.2
Ryberg, M.3
Kristiansson, E.4
Hallenberg, N.5
-
14
-
-
77956292257
-
An open source chimera checker for the fungal ITS region
-
doi: 10.1111/j.1755-0998.2010.02850.x
-
Nilsson RH, Abarenkov K, Veldre V, Nylinder S, De Wit P, et al. (2010) An open source chimera checker for the fungal ITS region. Mol Ecol Resour 10: 1076-1081 doi:10.1111/j.1755-0998.2010.02850.x.
-
(2010)
Mol Ecol Resour
, vol.10
, pp. 1076-1081
-
-
Nilsson, R.H.1
Abarenkov, K.2
Veldre, V.3
Nylinder, S.4
De Wit, P.5
-
15
-
-
25644460009
-
Approaching the taxonomic affiliation of unidentified sequences in public databases-an example from the mycorrhizal fungi
-
Nilsson RH, Kristiansson E, Ryberg M, Larsson KH, (2005) Approaching the taxonomic affiliation of unidentified sequences in public databases-an example from the mycorrhizal fungi. BMC Bioinformatics 6: 178.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 178
-
-
Nilsson, R.H.1
Kristiansson, E.2
Ryberg, M.3
Larsson, K.H.4
-
16
-
-
77956292565
-
An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology
-
Nilsson RH, Veldre V, Hartmann M, Unterseher M, Amend A, et al. (2010) An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology. Fungal Ecol 3: 284-287.
-
(2010)
Fungal Ecol
, vol.3
, pp. 284-287
-
-
Nilsson, R.H.1
Veldre, V.2
Hartmann, M.3
Unterseher, M.4
Amend, A.5
-
17
-
-
0034843854
-
The molecular revolution in ectomycorrhizal ecology: peeking into the black-box
-
doi: 10.1046/j.0962-1083.2001.01333.x
-
Horton TR, Bruns TD, (2001) The molecular revolution in ectomycorrhizal ecology: peeking into the black-box. Molecular Ecology 10: 1855-1871 doi:10.1046/j.0962-1083.2001.01333.x.
-
(2001)
Molecular Ecology
, vol.10
, pp. 1855-1871
-
-
Horton, T.R.1
Bruns, T.D.2
-
18
-
-
53149135089
-
Fungal community ecology: a hybrid beast with a molecular master
-
Peay KG, Kennedy PG, Bruns TD, (2008) Fungal community ecology: a hybrid beast with a molecular master. BioScience 58: 799-810.
-
(2008)
BioScience
, vol.58
, pp. 799-810
-
-
Peay, K.G.1
Kennedy, P.G.2
Bruns, T.D.3
-
19
-
-
34247402980
-
Morphological and molecular evidence supporting an arbutoid mycorrhizal relationship in the Costa Rican páramo
-
doi: 10.1007/s00572-006-0098-x
-
Osmundson TW, Halling RE, Den Bakker H, (2007) Morphological and molecular evidence supporting an arbutoid mycorrhizal relationship in the Costa Rican páramo. Mycorrhiza 17: 217-222 doi:10.1007/s00572-006-0098-x.
-
(2007)
Mycorrhiza
, vol.17
, pp. 217-222
-
-
Osmundson, T.W.1
Halling, R.E.2
Den Bakker, H.3
-
20
-
-
33845313663
-
Fruiting body-guided molecular identification of root-tip mantle mycelia provides strong indications of ectomycorrhizal associations in two species of Sistotrema (Basidiomycota)
-
doi: 10.1016/j.mycres.2006.09.017
-
Nilsson RH, Larsson K-H, Larsson E, Kõljalg U, (2006) Fruiting body-guided molecular identification of root-tip mantle mycelia provides strong indications of ectomycorrhizal associations in two species of Sistotrema (Basidiomycota). Mycol Res 110: 1426-1432 doi:10.1016/j.mycres.2006.09.017.
-
(2006)
Mycol Res
, vol.110
, pp. 1426-1432
-
-
Nilsson, R.H.1
Larsson, K.-H.2
Larsson, E.3
Kõljalg, U.4
-
21
-
-
34248524104
-
Using terminal restriction fragment length polymorphism (T-RFLP) to identify mycorrhizal fungi: a methods review
-
doi: 10.1007/s00572-007-0129-2
-
Dickie I, FitzJohn R, (2007) Using terminal restriction fragment length polymorphism (T-RFLP) to identify mycorrhizal fungi: a methods review. Mycorrhiza 17: 259-270 doi:10.1007/s00572-007-0129-2.
-
(2007)
Mycorrhiza
, vol.17
, pp. 259-270
-
-
Dickie, I.1
FitzJohn, R.2
-
22
-
-
79952447866
-
Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences
-
doi: 10.1016/j.fbr.2011.01.001
-
Hibbett DS, Ohman A, Glotzer D, Nuhn M, Kirk P, et al. (2011) Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences. Fungal Biol Rev 25: 38-47 doi:10.1016/j.fbr.2011.01.001.
-
(2011)
Fungal Biol Rev
, vol.25
, pp. 38-47
-
-
Hibbett, D.S.1
Ohman, A.2
Glotzer, D.3
Nuhn, M.4
Kirk, P.5
-
23
-
-
58249124483
-
How to know unknown fungi: the role of a herbarium
-
doi: 10.1111/j.1469-8137.2008.02703.x
-
Brock PM, Döring H, Bidartondo MI, (2009) How to know unknown fungi: the role of a herbarium. New Phytol 181: 719-724 doi:10.1111/j.1469-8137.2008.02703.x.
-
(2009)
New Phytol
, vol.181
, pp. 719-724
-
-
Brock, P.M.1
Döring, H.2
Bidartondo, M.I.3
-
24
-
-
84859599362
-
New taxonomy and old collections: integrating DNA barcoding into the collection curation process
-
doi: 10.1111/j.1755-0998.2011.03105.x
-
Puillandre N, Bouchet P, Boisselier-Dubayle M-C, Brisset J, Buge B, et al. (2012) New taxonomy and old collections: integrating DNA barcoding into the collection curation process. Mol Ecol Resour 12: 396-402 doi:10.1111/j.1755-0998.2011.03105.x.
-
(2012)
Mol Ecol Resour
, vol.12
, pp. 396-402
-
-
Puillandre, N.1
Bouchet, P.2
Boisselier-Dubayle, M.-C.3
Brisset, J.4
Buge, B.5
-
25
-
-
2542428731
-
AFLP and phylogenetic analyses of North American and European populations of Phytophthora ramorum
-
Ivors KL, Hayden KJ, Bonants PJM, Rizzo DM, Garbelotto M, (2004) AFLP and phylogenetic analyses of North American and European populations of Phytophthora ramorum. Mycol Res 108: 378-392.
-
(2004)
Mycol Res
, vol.108
, pp. 378-392
-
-
Ivors, K.L.1
Hayden, K.J.2
Bonants, P.J.M.3
Rizzo, D.M.4
Garbelotto, M.5
-
26
-
-
0001524736
-
Identification of indigenous and introduced symbiotic fungi in ectomycorrhizae by amplification of nuclear and mitochondrial ribosomal DNA
-
doi: 10.1139/b91-026
-
Gardes M, White TJ, Fortin JA, Bruns TD, Taylor JW, (1991) Identification of indigenous and introduced symbiotic fungi in ectomycorrhizae by amplification of nuclear and mitochondrial ribosomal DNA. Can J Bot 69: 180-190 doi:10.1139/b91-026.
-
(1991)
Can J Bot
, vol.69
, pp. 180-190
-
-
Gardes, M.1
White, T.J.2
Fortin, J.A.3
Bruns, T.D.4
Taylor, J.W.5
-
27
-
-
0000432452
-
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
-
Innis MA, Gelfand DH, Sninsky JJ, White TJ, editors, London: Academic Press
-
White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, editors. PCR Protocols.London: Academic Press. pp. 315-322.
-
(1990)
PCR Protocols
, pp. 315-322
-
-
White, T.J.1
Bruns, T.2
Lee, S.3
Taylor, J.4
-
28
-
-
0141522899
-
On the unreliability of published DNA sequences
-
doi: 10.1046/j.1469-8137.2003.00861.x
-
Bridge PD, Roberts PJ, Spooner BM, Panchal G, (2003) On the unreliability of published DNA sequences. New Phytol 160: 43-48 doi:10.1046/j.1469-8137.2003.00861.x.
-
(2003)
New Phytol
, vol.160
, pp. 43-48
-
-
Bridge, P.D.1
Roberts, P.J.2
Spooner, B.M.3
Panchal, G.4
-
29
-
-
0002547839
-
The analysis of residuals in cross-classified tables
-
doi: 10.2307/2529686
-
Haberman SJ, (1973) The analysis of residuals in cross-classified tables. Biometrics 29: 205-220 doi:10.2307/2529686.
-
(1973)
Biometrics
, vol.29
, pp. 205-220
-
-
Haberman, S.J.1
-
31
-
-
0034395862
-
Type I error rate comparisons of post hoc procedures for i j Chi-square tables
-
doi: 10.1177/00131640021970871
-
MacDonald PL, Gardner RC, (2000) Type I error rate comparisons of post hoc procedures for i j Chi-square tables. Educ Psychol Meas 60: 735-754 doi:10.1177/00131640021970871.
-
(2000)
Educ Psychol Meas
, vol.60
, pp. 735-754
-
-
MacDonald, P.L.1
Gardner, R.C.2
-
32
-
-
33748949249
-
Species discovery versus species identification in DNA barcoding efforts: Response to Rubinoff
-
doi: 10.1111/j.1523-1739.2006.00543.x
-
DeSalle R, (2006) Species discovery versus species identification in DNA barcoding efforts: Response to Rubinoff. Conservation Biology 20: 1545-1547 doi:10.1111/j.1523-1739.2006.00543.x.
-
(2006)
Conservation Biology
, vol.20
, pp. 1545-1547
-
-
DeSalle, R.1
-
33
-
-
31344458132
-
The unholy trinity: taxonomy, species delimitation and DNA barcoding
-
doi: 10.1098/rstb.2005.1722
-
DeSalle R, Egan MG, Siddall M, (2005) The unholy trinity: taxonomy, species delimitation and DNA barcoding. Philos Trans R Soc Lond B Biol Sci 360: 1905-1916 doi:10.1098/rstb.2005.1722.
-
(2005)
Philos Trans R Soc Lond B Biol Sci
, vol.360
, pp. 1905-1916
-
-
DeSalle, R.1
Egan, M.G.2
Siddall, M.3
-
34
-
-
33847767178
-
A comparison of algorithms for the identification of specimens using DNA barcodes: examples from gymnosperms
-
doi: 10.1111/j.1096-0031.2006.00126.x
-
Little DP, Stevenson DW, (2007) A comparison of algorithms for the identification of specimens using DNA barcodes: examples from gymnosperms. Cladistics 23: 1-21 doi:10.1111/j.1096-0031.2006.00126.x.
-
(2007)
Cladistics
, vol.23
, pp. 1-21
-
-
Little, D.P.1
Stevenson, D.W.2
-
35
-
-
29144473686
-
DNA barcoding: error rates based on comprehensive sampling
-
doi: 10.1371/journal.pbio.0030422
-
Meyer CP, Paulay G, (2005) DNA barcoding: error rates based on comprehensive sampling. PLoS Biol 3: e422 doi:10.1371/journal.pbio.0030422.
-
(2005)
PLoS Biol
, vol.3
-
-
Meyer, C.P.1
Paulay, G.2
-
36
-
-
74049162393
-
Taxonomy: a discipline on the brink of extinction: are DNA barcode scanners the future of biodiversity research?
-
Lücking R, (2008) Taxonomy: a discipline on the brink of extinction: are DNA barcode scanners the future of biodiversity research? Archives des sciences 61: 75-88.
-
(2008)
Archives Des Sciences
, vol.61
, pp. 75-88
-
-
Lücking, R.1
|