Marine Sediment Bacteria Harbor Antibiotic Resistance Genes Highly Similar to Those Found in Human Pathogens

Microbial Ecology

Volumn 65, Issue 4, 2013, Pages 975-981

  Yang, Jing ^a   Wang, Chao ^a   Shu, Chang ^b   Liu, Li ^a   Geng, Jianing ^b   Hu, Songnian ^b   Feng, Jie ^a  

^a INSTITUTE OF MICROBIOLOGY   (China)

^b Chinese Academy of Sciences   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; SEA WATER;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL INFECTION; BACTERIUM; CLASSIFICATION; DRUG EFFECT; GENETICS; HUMAN; ISOLATION AND PURIFICATION; METABOLISM; METAGENOMICS; MICROBIOLOGY; SEDIMENT;

BACTERIA; BACTERIAL INFECTIONS; BACTERIAL PROTEINS; DRUG RESISTANCE, BACTERIAL; GEOLOGIC SEDIMENTS; HUMANS; METAGENOMICS; SEAWATER;

BACTERIA (MICROORGANISMS);

EID: 84876940241     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-013-0187-2     Document Type: Article

References (33)

1. D'Costa VM, McGrann KM, Hughes DW, Wright GD (2006) Sampling the antibiotic resistome. Sci 311(5759): 374-377. doi: 10. 1126/science. 1120800.
2. Forsberg KJ, Reyes A, Wang B, Selleck EM, Sommer MO, Dantas G (2012) The shared antibiotic resistome of soil bacteria and human pathogens. Sci 337(6098): 1107-1111. doi: 10. 1126/science. 1220761.
3. Brown Kav A, Sasson G, Jami E, Doron-Faigenboim A, Benhar I, Mizrahi I (2012) Insights into the bovine rumen plasmidome. Proc Natl Acad Sci USA 14(109): 7.
4. Szczepanowski R, Bekel T, Goesmann A, Krause L, Krömeke H, Kaiser O, Eichler W, Pühler A, Schlüter A (2008) Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology. J Biotechnol 136: 11.
5. Zhang T, Zhang XX, Ye L (2011) Plasmid metagenome reveals high levels of antibiotic resistance genes and mobile genetic elements in activated sludge. PLoS One 6(10): e26041. doi: 10. 1371/journal. pone. 0026041.
6. Weisburg WG, Barns SM, Pelletier DA, Lane DJ (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173(2): 697-703.
7. Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A (2010) Manipulation of FASTQ data with Galaxy. Bioinforma 26(14): 1783-1785. doi: 10. 1093/bioinformatics/btq281.
8. Zerbino DR, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18(5): 821-829. doi: 10. 1101/gr. 074492. 107.
9. Ma Y, Paulsen IT, Palenik B (2012) Analysis of two marine metagenomes reveals the diversity of plasmids in oceanic environments. Environ Microbiol 14(2): 453-466. doi: 10. 1111/j. 1462-2920. 2011. 02633. x.
10. Sonnhammer EL, Eddy SR, Birney E, Bateman A, Durbin R (1998) Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Res 26(1): 320-322.
11. Liu B, Pop M (2009) ARDB-Antibiotic Resistance Genes Database. Nucleic Acids Res 37: D443-447. doi: 10. 1093/nar/gkn656.
12. Seyfried EE, Newton RJ, Rubert KF, Pedersen JA, McMahon KD (2010) Occurrence of tetracycline resistance genes in aquaculture facilities with varying use of oxytetracycline. Microb Ecol 59(4): 799-807. doi: 10. 1007/s00248-009-9624-7.
13. Gao P, Mao D, Luo Y, Wang L, Xu B, Xu L (2012) Occurrence of sulfonamide and tetracycline-resistant bacteria and resistance genes in aquaculture environment. Water Res 46(7): 2355-2364. doi: 10. 1016/j. watres. 2012. 02. 004.
14. Di Cesare A, Vignaroli C, Luna GM, Pasquaroli S, Biavasco F (2012) Antibiotic-resistant enterococci in seawater and sediments from a coastal fish farm. Microb Drug Resist. doi: 10. 1089/mdr. 2011. 0204.
15. Tamminen M, Karkman A, Lohmus A, Muziasari WI, Takasu H, Wada S, Suzuki S, Virta M (2011) Tetracycline resistance genes persist at aquaculture farms in the absence of selection pressure. Environ Sci Technol 45(2): 386-391. doi: 10. 1021/es102725n.
16. Dang H, Ren J, Song L, Sun S, An L (2008) Diverse tetracycline resistant bacteria and resistance genes from coastal waters of Jiaozhou Bay. Microb Ecol 55(2): 237-246. doi: 10. 1007/s00248-007-9271-9.
17. Akiyama T, Khan AA (2012) Molecular characterization of strains of fluoroquinolone-resistant Salmonella enterica serovar Schwarzengrund carrying multidrug resistance isolated from imported foods. J Antimicrob Chemother 67(1): 101-110. doi: 10. 1093/jac/dkr414.
18. Nordmann P, Poirel L (2005) Emergence of plasmid-mediated resistance to quinolones in Enterobacteriaceae. J Antimicrob Chemother 56(3): 463-469. doi: 10. 1093/jac/dki245.
19. Poirel L, Rodriguez-Martinez JM, Mammeri H, Liard A, Nordmann P (2005) Origin of plasmid-mediated quinolone resistance determinant QnrA. Antimicrob Agents Chemother 49(8): 3523-3525. doi: 10. 1128/AAC. 49. 8. 3523-3525. 2005.
20. L'Abee-Lund TM, Sorum H (2000) Functional Tn5393-like transposon in the R plasmid pRAS2 from the fish pathogen Aeromonas salmonicida subspecies salmonicida isolated in Norway. Appl Environ Microbiol 66(12): 5533-5535.
21. Ambrose KD, Nisbet R, Stephens DS (2005) Macrolide efflux in Streptococcus pneumoniae is mediated by a dual efflux pump (mel and mef) and is erythromycin inducible. Antimicrob Agents Chemother 49(10): 4203-4209. doi: 10. 1128/AAC. 49. 10. 4203-4209. 2005.
22. Kehrenberg C, Schwarz S (2006) Distribution of florfenicol resistance genes fexA and cfr among chloramphenicol-resistant Staphylococcus isolates. Antimicrob Agents Chemother 50(4): 1156-1163. doi: 10. 1128/AAC. 50. 4. 1156-1163. 2006.
23. Murray KD, Aronstein KA, de Leon JH (2007) Analysis of pMA67, a predicted rolling-circle replicating, mobilizable, tetracycline-resistance plasmid from the honey bee pathogen, Paenibacillus larvae. Plasmid 58(2): 89-100. doi: 10. 1016/j. plasmid. 2007. 02. 001.
24. You Y, Hilpert M, Ward MJ (2012) Detection of a common and persistent tet(L)-carrying plasmid in chicken-waste-impacted farm soil. Appl Environ Microbiol 78(9): 3203-3213. doi: 10. 1128/AEM. 07763-11.
25. Akinbowale OL, Peng H, Barton MD (2007) Diversity of tetracycline resistance genes in bacteria from aquaculture sources in Australia. J Appl Microbiol 103(5): 2016-2025. doi: 10. 1111/j. 1365-2672. 2007. 03445. x.
26. Zhao JY, Dang H (2012) Coastal seawater bacteria harbor a large reservoir of plasmid-mediated quinolone resistance determinants in Jiaozhou Bay, China. Microb Ecol 64(1): 187-199. doi: 10. 1007/s00248-012-0008-z.
27. Verner-Jeffreys DW, Welch TJ, Schwarz T, Pond MJ, Woodward MJ, Haig SJ, Rimmer GS, Roberts E, Morrison V, Baker-Austin C (2009) High prevalence of multidrug-tolerant bacteria and associated antimicrobial resistance genes isolated from ornamental fish and their carriage water. PLoS One 4(12): e8388. doi: 10. 1371/journal. pone. 0008388.
28. Mantengoli E, Rossolini GM (2005) Tn5393d, a complex Tn5393 derivative carrying the PER-1 extended-spectrum beta-lactamase gene and other resistance determinants. Antimicrob Agents Chemother 49(8): 3289-3296. doi: 10. 1128/AAC. 49. 8. 3289-3296. 2005.
29. Petrovski S, Stanisich VA (2011) Embedded elements in the IncPbeta plasmids R772 and R906 can be mobilized and can serve as a source of diverse and novel elements. Microbiol 157(Pt 6): 1714-1725. doi: 10. 1099/mic. 0. 047761-0.
30. Miriagou V, Papagiannitsis CC, Kotsakis SD, Loli A, Tzelepi E, Legakis NJ, Tzouvelekis LS (2010) Sequence of pNL194, a 79. 3-kilobase IncN plasmid carrying the blaVIM-1 metallo-beta-lactamase gene in Klebsiella pneumoniae. Antimicrob Agents Chemother 54(10): 4497-4502. doi: 10. 1128/AAC. 00665-10.
31. Del Grosso M, Camilli R, Iannelli F, Pozzi G, Pantosti A (2006) The mef(E)-carrying genetic element (mega) of Streptococcus pneumoniae: insertion sites and association with other genetic elements. Antimicrob Agents Chemother 50(10): 3361-3366. doi: 10. 1128/AAC. 00277-06.
32. Zhanel GG, Wang X, Nichol K, Nikulin A, Wierzbowski AK, Mulvey M, Hoban DJ (2006) Molecular characterisation of Canadian paediatric multidrug-resistant Streptococcus pneumoniae from 1998-2004. Int J Antimicrob Agents 28(5): 465-471. doi: 10. 1016/j. ijantimicag. 2006. 08. 005.
33. Jonsson M, Swedberg G (2006) Macrolide resistance can be transferred by conjugation from viridans streptococci to Streptococcus pyogenes. Int J Antimicrob Agents 28(2): 101-103. doi: 10. 1016/j. ijantimicag. 2006. 02. 023.