Fulfilling Koch's postulates confirms the monopartite nature of tomato leaf deformation virus: A begomovirus native to the New World

Virus Research

Volumn 173, Issue 2, 2013, Pages 286-293

  Sanchez Campos S ^a   Martinez Ayala A ^a   Marquez Martin B ^a   Aragon Caballero L ^b   Navas Castillo, J ^a   Moriones, E ^a  

^a INSTITUTO DE HORTOFRUTICULTURA SUBTROPICAL Y MEDITERRÁNEA LA MAYORA   (Spain)

^b UNIVERSIDAD NACIONAL AGRARIA LA MOLINA   (Peru)

Author keywords

Begomovirus; Geminiviridae; Genetic diversity; Solanum lycopersicum; Tomato; Tomato leaf deformation virus

Indexed keywords

VIRUS DNA;

ARTICLE; BEGOMOVIRUS; CONTROLLED STUDY; CROP; GENE SEQUENCE; GENETIC VARIABILITY; INOCULATION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PERU; PLANT LEAF; PRIORITY JOURNAL; SEGREGATION ANALYSIS; STUNTING (PLANT); TOMATO; TOMATO LEAF DEFORMATION VIRUS; VIRUS ISOLATION; WILD PLANT;

BEGOMOVIRUS; CLONING, MOLECULAR; CLUSTER ANALYSIS; DNA, VIRAL; GENETIC VARIATION; LYCOPERSICON ESCULENTUM; MOLECULAR SEQUENCE DATA; PERU; PHYLOGENY; PLANT DISEASES; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

BEGOMOVIRUS; GEMINIVIRIDAE; LYCOPERSICON ESCULENTUM;

EID: 84876851683     PISSN: 01681702     EISSN: 18727492     Source Type: Journal    
DOI: 10.1016/j.virusres.2013.02.002     Document Type: Article

References (54)

1. Albuquerque L., Inoue-Nagata A., Pinheiro B., Resende R., Moriones E., Navas-Castillo J. Genetic diversity and recombination analysis of sweepoviruses from Brazil. Virology Journal 2012, 9:241.
2. Amin I., Hussain K., Akbergenov R., Yadav J.S., Qazi J., Mansoor S., Hohn T., Fauquet C.M., Briddon R.W. Suppressors of RNA silencing encoded by the components of the cotton leaf curl Begomovirus-BetaSatellite complex. Molecular Plant-Microbe Interactions 2011, 24:973-983.
3. Anonymous Producción Hortofrutícola 2010, Oficina de Estudios Estadísticos y Económicos 2010, Ministerio de Agricultura, Perú.
4. Argüello-Astorga G.R., Guevara-Gónzalez R.G., Herrera-Estrella L.R., Rivera-Bustamante R.F. Geminivirus replication origins have a group-specific organization of iterative elements: a model for replication. Virology 1994, 203:90-100.
5. Briddon R., Patil B., Bagewadi B., Nawaz-ul-Rehman M., Fauquet C. Distinct evolutionary histories of the DNA-A and DNA-B components of bipartite begomoviruses. BMC Evolutionary Biology 2010, 10:97.
6. Briddon R.W., Stanley J. Sub-viral agents associated with plant-infecting single-stranded DNA viruses. Virology 2006, 344:198-210.
7. Brown J.K., Fauquet C.M., Briddon R.W., Zerbini M., Moriones E., Navas-Castillo J. Geminiviridae. Virus Taxonomy. Ninth Report of the ICTV 2012, 351-373. Elsevier/Academic Press, London. A.M.Q. King, M.J. Adams, E.B. Carstens, E.J. Lefkowitz (Eds.).
8. Cooper I., Jones R.A.C. Wild plants and viruses: under-investigated ecosystems. Advances in Virus Research 2006, 67:1-47.
9. Delatte H., Holota H., Moury B., Reynaud B., Lett J.M., Peterschmitt M. Evidence for a founder effect after introduction of Tomato yellow leaf curl virus-Mild in an insular environment. Journal of Molecular Evolution 2007, 65:112-118.
10. Duffy S., Holmes E.C. Multiple introductions of the Old World begomovirus tomato yellow leaf curl virus into the New World. Applied and Environment Microbiology 2007, 73:7114-7117.
11. Duffy S., Holmes E.C. Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses. Journal of General Virology 2009, 90:1539-1547.
12. Fiallo-Olivé E., Martínez-Zubiaur Y., Moriones E., Navas-Castillo J. A novel class of DNA satellites associated with New World begomoviruses. Virology 2012, 426:1-6.
13. Fraile A., Malpica J.M., Aranda M.A., Rodríguez-Cerezo E., García-Arenal F. Genetic diversity in tobacco mild green mosaic tobamovirus infecting the wild plant Nicotiana glauca. Virology 1996, 223:148-155.
14. García-Andrés S., Tomás D.M., Navas-Castillo J., Moriones E. Resistance-driven selection of begomoviruses associated with the tomato yellow leaf curl disease. Virus Research 2009, 146:66-72.
15. García-Arenal F., McDonald B.A. An analysis of the durability of resistance to plant viruses. Phytopathology 2003, 93:941-952.
16. García-Arenal F., Fraile A., Malpica J.M. Variability and genetic structure of plant virus populations. Annual Review of Phytopathology 2001, 39:157-186.
17. Haible D., Kober S., Jeske H. Rolling circle amplification revolutionizes diagnosis and genomics of geminiviruses. Journal of Virological Methods 2006, 135:9-16.
18. Hall G. Selective constraint and genetic differentiation in geographically distant barley yellow dwarf virus populations. Journal of General Virology 2006, 87:3067-3075.
19. Hanley-Bowdoin L., Settlage S.B., Orozco B.M., Nagar S., Robertson D. Geminiviruses: models for plant DNA replication, transcription, and cell cycle regulation. Critical Reviews in Plant Sciences 1999, 18:71-106.
20. Idris A.M., Brown J.K. Sinaloa tomato leaf curl geminivirus: biological and molecular evidence for a new subgroup III virus. Phytopathology 1998, 88:648-657.
21. Inoue-Nagata A.K., Albuquerque L.C., Rocha W.B., Nagata T. A simple method for cloning the complete begomovirus genome using the bacteriophage phi 29 DNA polymerase. Journal of Virological Methods 2004, 116:209-211.
22. Jeske H. Replication of geminiviruses and the use of rolling circle amplification for their diagnosis. Tomato Yellow Leaf Curl Virus Disease. Management, Molecular Biology, Breeding for Resistance 2007, 141-156. Springer, The Netherlands. H. Czosnek (Ed.).
23. Lazarowitz S.G., Wu L.C., Rogers S.G., Elmer J.S. Sequence-specific interaction with the viral Al1 protein identifies a geminivirus DNA-replication origin. Plant Cell 1992, 4:799-809.
24. Luna A.P., Morilla G., Voinnet O., Bejarano E.R. Functional analysis of gene-silencing suppressors from tomato yellow leaf curl disease viruses. Molecular Plant-Microbe Interactions 2012, 25:1294-1306.
25. Márquez-Martín B., Aragón-Caballero L., Fiallo-Olivé E., Navas-Castillo J., Moriones E. Tomato leaf deformation virus, a novel begomovirus associated with a severe disease of tomato in Peru. European Journal of Plant Pathology 2011, 129:1-7.
26. Michelson I., Zamir D., Czosnek H. Accumulation and translocation of tomato yellow leaf curl virus (TYLCV) in a Lycopersicon esculentum breeding line containing the L. chilense TYLCV tolerance gene Ty-1. Phytopathology 1994, 84:928-933.
27. Monci F., García-Andrés S., Maldonado J.A., Moriones E. Resistance to monopartite begomoviruses associated with the bean leaf crumple disease in Phaseolus vulgaris controlled by a single dominant gene. Phytopathology 2005, 95:819-826.
28. Morales F.J., Jones P.G. The ecology and epidemiology of whitefly-transmitted viruses in Latin America. Virus Research 2004, 100:57-65.
29. Morales F.J. Distribution and dissemination of begomoviruses in Latin America and the Caribbean. Bemisia: Bionomics and Management of a Global Pest 2010, 283-318. Springer, Dordrecht, Heidelberg, London, New York. P.A. Stansley, S.E. Naranjo (Eds.).
30. Moriones E., Navas-Castillo J. Tomato yellow leaf curl virus, an emerging virus complex causing epidemics worldwide. Virus Research 2000, 71:123-134.
31. Nauen R., Denholm I. Resistance of insect pests to neonicotinoid insecticides: current status and future prospects. Archives of Insect Biochemistry and Physiology 2005, 58:200-215.
32. Navas-Castillo J., Fiallo-Olivé E., Sánchez-Campos S. Emerging virus diseases transmitted by whiteflies. Annual Review of Phytopathology 2011, 49:219-248.
33. Navas-Castillo J., Sánchez-Campos S., Díaz J.A., Sáez-Alonso E., Moriones E. Tomato yellow leaf curl virus - is causes a novel disease of common bean and severe epidemics in tomato in Spain. Plant Disease 1999, 83:29-32.
34. Navot N., Pichersky E., Zeidan M., Zamir D., Czosnek H. Tomato yellow leaf curl virus - a whitefly-transmitted geminivirus with a single genomic component. Virology 1991, 185:151-161.
35. Noris E., Vaira A.M., Caciagli P., Masenga V., Gronenborn B., Accotto G.P. Amino acids in the capsid protein of tomato yellow leaf curl virus that are crucial for systemic infection, particle formation, and insect transmission. Journal of Virology 1998, 72:10050-10057.
36. Pamilo P., Bianchi N.O. Evolution of the Zfx and Zfy genes: rates and interdependence between the genes. Molecular Biology and Evolution 1993, 10:271-281.
37. Picó B., Sifres A., Elia M., Díez M.J., Nuez F. Searching for new resistance sources to tomato yellow leaf curl virus within a highly variable wild Lycopersicon genetic pool. Acta Physiologiae Plantarum 2000, 22:344-350.
38. Polston J., McGovern R., Brown L. Introduction of tomato yellow leaf curl virus in Florida and implications for the spread of this and other geminiviruses of tomato. Plant Disease 1999, 83:984-988.
39. Polston J., Lapidot M. Management of tomato yellow leaf curl virus: US and Israel perspectives. Tomato Yellow Leaf Curl Virus Disease. Management, Molecular Biology, Breeding for Resistance 2007, 251-262. Springer, The Netherlands. Czosnek, Henryk (Eds.).
40. Pooma W., Gillette W.K., Jeffrey J.L., Petty I.T.D. Host and viral factors determine the dispensability of coat protein for bipartite geminivirus systemic movement. Virology 1996, 218:264-268.
41. Pooma W., Petty I.T.D. Tomato golden mosaic virus open reading frame AL4 is genetically distinct from its C4 analogue in monopartite geminiviruses. Journal of General Virology 1996, 77:1947-1951.
42. Rojas M.R., Gilbertson R.J., Rusell D.R., Maxwell D.P. Use of degenerate primers in the polymerase chain-reaction to detect whitefly-transmitted geminiviruses. Plant Disease 1993, 77:340-347.
43. Rojas M.R., Gilbertson R.L. Emerging plant viruses: a diversity of mechanisms and opportunities. Plant Virus Evolution 2008, 27-51. Springer-Verlag, Berlin, Heidelberg. M.J. Roossinck (Ed.).
44. Rojas M.R., Jiang H., Salati R., Xoconostle-Cazares B., Sudarshana M.R., Lucas W.J., Gilbertson R.L. Functional analysis of proteins involved in movement of the monopartite begomovirus, tomato yellow leaf curl virus. Virology 2001, 291:110-125.
45. Sánchez-Campos S., Díaz J.A., Monci F., Bejarano E.R., Reina J., Navas-Castillo J., Aranda M.A., Moriones E. High genetic stability of the begomovirus Tomato yellow leaf curl Sardinia virus in southern Spain over an 8-year period. Phytopathology 2002, 92:842-849.
46. Sanz A.I., Fraile A., Gallego J.M., Malpica J.M., García-Arenal F. Genetic variability of natural populations of cotton leaf curl geminivirus, a single-stranded DNA virus. Journal of Molecular Evolution 1999, 49:672-681.
47. Seal S.E., vandenBosch F., Jeger M.J. Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control. Comptes Rendus Plant Science 2006, 25:23-46.
48. Stanley J. Infectivity of the cloned geminivirus genome requires sequences from both DNAs. Nature 1983, 305:643-645.
49. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution 2007, 24:1596-1599.
50. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 2011, 28:2731-2739.
51. Varma A., Mandal B., Singh M.K. Global emergence and spread of whitefly Bemisia tabaci transmitted geminiviruses. The Whitefly, Bemisia tabaci (Homoptera: Aleyrodidae) Interaction with Geminivirus-Infected Host Plants 2011, 205-292. Springer, Netherlands. W.M.O. Thompson (Ed.).
52. Vidavski F., Czosnek H., Gazit S., Levy D., Lapidot M. Pyramiding of genes conferring resistance to tomato yellow leaf curl virus from different wild tomato species. Plant Breeding 2008, 127:625-631.
53. Wartig L., Kheyr-Pour A., Noris E., De Kouchkovsky F., Jouanneau F., Gronenborn B., Jupin I. Genetic analysis of the monopartite tomato yellow leaf curl geminivirus: roles of V1, V2, and C2 ORFs in viral pathogenesis. Virology 1997, 228:132-140.
54. Yahara T., Ooi K., Oshita S., Ishii I., Ikegami M. Molecular evolution of a host-range gene in geminiviruses infecting asexual populations of Eupatorium makinoi. Genes and Genetic Systems 1998, 73:137-141.