-
1
-
-
33748799671
-
New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras
-
Ashelford, K. 2006. New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Applied and Environmental Microbiology 72: 5734-5741.
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 5734-5741
-
-
Ashelford, K.1
-
2
-
-
0033765880
-
Persistence of selected Spartina alterniflora rhizosphere diazotrophs exposed to natural and manipulated environmental variability
-
Bagwell, C. E., and C. R. Lovell. 2000. Persistence of selected Spartina alterniflora rhizosphere diazotrophs exposed to natural and manipulated environmental variability. Applied and Environmental Microbiology 66: 4625-4633.
-
(2000)
Applied and Environmental Microbiology
, vol.66
, pp. 4625-4633
-
-
Bagwell, C.E.1
Lovell, C.R.2
-
3
-
-
22744447066
-
Molecular characterization of sulfate-reducing bacteria in a New England salt marsh
-
Bahr, M., B. Crump, V. Klepac-Ceraj, A. Teske, M. Sogin, and J. Hobbie. 2005. Molecular characterization of sulfate-reducing bacteria in a New England salt marsh. Environmental Microbiology 7: 1175-1185.
-
(2005)
Environmental Microbiology
, vol.7
, pp. 1175-1185
-
-
Bahr, M.1
Crump, B.2
Klepac-Ceraj, V.3
Teske, A.4
Sogin, M.5
Hobbie, J.6
-
4
-
-
33745767937
-
Vertical profiles of methanogenesis and methanogens in two contrasting acidic peatlands in central New York State, USA
-
Cadillo-Quiroz, H., S. Brauer, E. Yashiro, C. Sun, J. Yavitt, and S. Zinder. 2006. Vertical profiles of methanogenesis and methanogens in two contrasting acidic peatlands in central New York State, USA. Environmental Microbiology 8: 1428-1440.
-
(2006)
Environmental Microbiology
, vol.8
, pp. 1428-1440
-
-
Cadillo-Quiroz, H.1
Brauer, S.2
Yashiro, E.3
Sun, C.4
Yavitt, J.5
Zinder, S.6
-
5
-
-
42049084820
-
Characterization of the archaeal community in a minerotrophic fen and terminal restriction fragment length polymorphism-directed isolation of a novel hydrogenotrophic methanogen
-
Cadillo-Quiroz, H., E. Yashiro, J. Yavitt, and S. Zinder. 2008. Characterization of the archaeal community in a minerotrophic fen and terminal restriction fragment length polymorphism-directed isolation of a novel hydrogenotrophic methanogen. Applied and Environmental Microbiology 74: 2059-2068.
-
(2008)
Applied and Environmental Microbiology
, vol.74
, pp. 2059-2068
-
-
Cadillo-Quiroz, H.1
Yashiro, E.2
Yavitt, J.3
Zinder, S.4
-
6
-
-
67649787310
-
Methanosphaerula palustris gen. nov., sp nov., a hydrogenotrophic methanogen isolated from a minerotrophic fen peatland
-
Cadillo-Quiroz, H., J. Yavitt, and S. H. Zinder. 2009. Methanosphaerula palustris gen. nov., sp nov., a hydrogenotrophic methanogen isolated from a minerotrophic fen peatland. International Journal of Systematic and Evolutionary Microbiology 59: 928-935.
-
(2009)
International Journal of Systematic and Evolutionary Microbiology
, vol.59
, pp. 928-935
-
-
Cadillo-Quiroz, H.1
Yavitt, J.2
Zinder, S.H.3
-
7
-
-
77953326699
-
Diversity and community structure of archaea inhabiting the rhizoplane of two contrasting plants from an acidic bog
-
Cadillo-Quiroz, H., J. Yavitt, S. Zinder, and J. Thies. 2010. Diversity and community structure of archaea inhabiting the rhizoplane of two contrasting plants from an acidic bog. Microbial Ecology 59: 757-767.
-
(2010)
Microbial Ecology
, vol.59
, pp. 757-767
-
-
Cadillo-Quiroz, H.1
Yavitt, J.2
Zinder, S.3
Thies, J.4
-
8
-
-
0033050621
-
Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soils and sediments
-
Conrad, R. 1999. Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soils and sediments. FEMS Microbiology Ecology 29: 193-202.
-
(1999)
FEMS Microbiology Ecology
, vol.29
, pp. 193-202
-
-
Conrad, R.1
-
9
-
-
33745012854
-
Rice cluster I methanogens, an important group of Archaea producing greenhouse gas in soil
-
Conrad, R., C. Erkel, and W. Liesack. 2006. Rice cluster I methanogens, an important group of Archaea producing greenhouse gas in soil. Current Opinion in Biotechnology 17: 262-267.
-
(2006)
Current Opinion in Biotechnology
, vol.17
, pp. 262-267
-
-
Conrad, R.1
Erkel, C.2
Liesack, W.3
-
10
-
-
65249099608
-
Nitrifier and denitrifier molecular operational taxonomic unit compositions from sites of a freshwater estuary of Chesapeake Bay
-
Fortunato, C. S., D. B. Carlini, E. Ewers, and K. L. Bushaw-Newton. 2009. Nitrifier and denitrifier molecular operational taxonomic unit compositions from sites of a freshwater estuary of Chesapeake Bay. Canadian Journal of Microbiology 55: 333-346.
-
(2009)
Canadian Journal of Microbiology
, vol.55
, pp. 333-346
-
-
Fortunato, C.S.1
Carlini, D.B.2
Ewers, E.3
Bushaw-Newton, K.L.4
-
12
-
-
0040336333
-
Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microscosms
-
Grobkopf, R., S. Stubner, and W. Liesack. 1998. Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microscosms. Applied and Environmental Microbiology 64: 4983-4989.
-
(1998)
Applied and Environmental Microbiology
, vol.64
, pp. 4983-4989
-
-
Grobkopf, R.1
Stubner, S.2
Liesack, W.3
-
13
-
-
79952006773
-
Chimeric 16S sequence formation and detection in Sanger and 454-pyrosequencing PCR amplicons
-
Haas, B. J., D. Gevers, A. Earl, M. Feldgarden, D. V. Ward, G. Giannokus, D. Ciulla, D. Tabbaa, S. K. Hiighlander, E. Sodergren, B. Methe, T. Z. Desantis, J. F. Petrosino, R. Knight, and B. W. Birren. 2011. Chimeric 16S sequence formation and detection in Sanger and 454-pyrosequencing PCR amplicons. Genome Research 21: 494-504.
-
(2011)
Genome Research
, vol.21
, pp. 494-504
-
-
Haas, B.J.1
Gevers, D.2
Earl, A.3
Feldgarden, M.4
Ward, D.V.5
Giannokus, G.6
Ciulla, D.7
Tabbaa, D.8
Hiighlander, S.K.9
Sodergren, E.10
Methe, B.11
Desantis, T.Z.12
Petrosino, J.F.13
Knight, R.14
Birren, B.W.15
-
15
-
-
15944406459
-
Phenotypic characterization of Rice Cluster III archaea without prior isolation by applying quantitative polymerase chain reaction to an enrichment culture
-
Kemnitz, D., S. Kolb, and R. Conrad. 2005. Phenotypic characterization of Rice Cluster III archaea without prior isolation by applying quantitative polymerase chain reaction to an enrichment culture. Environmental Microbiology 7: 553-565.
-
(2005)
Environmental Microbiology
, vol.7
, pp. 553-565
-
-
Kemnitz, D.1
Kolb, S.2
Conrad, R.3
-
16
-
-
9944260987
-
Salt marsh pore water geochemistry does not correlate with microbial community structure
-
Koretsky, C., P. Vancappellen, T. Dichristina, J. Kostka, K. Lowe, C. Moore, A. Roychoudhury, and E. Viollier. 2005. Salt marsh pore water geochemistry does not correlate with microbial community structure. Estuarine, Coastal and Shelf Science 62: 233-251.
-
(2005)
Estuarine, Coastal and Shelf Science
, vol.62
, pp. 233-251
-
-
Koretsky, C.1
Vancappellen, P.2
Dichristina, T.3
Kostka, J.4
Lowe, K.5
Moore, C.6
Roychoudhury, A.7
Viollier, E.8
-
17
-
-
52949148529
-
Niche separation of ammonia-oxidizing bacteria across a tidal freshwater marsh
-
Laanbroek, H., and A. Speksnijder. 2008. Niche separation of ammonia-oxidizing bacteria across a tidal freshwater marsh. Environmental Microbiology 10: 3017-3025.
-
(2008)
Environmental Microbiology
, vol.10
, pp. 3017-3025
-
-
Laanbroek, H.1
Speksnijder, A.2
-
18
-
-
68549107704
-
The diverse bacterial community in intertidal, anaerobic sediments at Sapelo Island, Georgia
-
Lasher, C., G. Dyszynski, K. Everett, J. Edmonds, W. Ye, W. Sheldon, S. Wang, S. Joye, M. Moran, and W. B. Whitman. 2009. The diverse bacterial community in intertidal, anaerobic sediments at Sapelo Island, Georgia. Microbial Ecology 58: 244-261.
-
(2009)
Microbial Ecology
, vol.58
, pp. 244-261
-
-
Lasher, C.1
Dyszynski, G.2
Everett, K.3
Edmonds, J.4
Ye, W.5
Sheldon, W.6
Wang, S.7
Joye, S.8
Moran, M.9
Whitman, W.B.10
-
19
-
-
0030661563
-
Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
-
Liu, W. T., T. L. Marsh, H. Cheng, and L. J. Forney. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Applied and Environmental Microbiology 63: 4516-4522.
-
(1997)
Applied and Environmental Microbiology
, vol.63
, pp. 4516-4522
-
-
Liu, W.T.1
Marsh, T.L.2
Cheng, H.3
Forney, L.J.4
-
20
-
-
0035678560
-
Stability of a rhizosphere microbial community exposed to natural and manipulated environmental variability
-
Lovell, C. R., C. E. Bagwell, M. Czako, L. Marton, Y. M. Piceno, and D. B. Ringelberg. 2001. Stability of a rhizosphere microbial community exposed to natural and manipulated environmental variability. FEMS Microbiology Ecology 38: 69-76.
-
(2001)
FEMS Microbiology Ecology
, vol.38
, pp. 69-76
-
-
Lovell, C.R.1
Bagwell, C.E.2
Czako, M.3
Marton, L.4
Piceno, Y.M.5
Ringelberg, D.B.6
-
21
-
-
14344266223
-
Detecting active methanogenic populations on rice roots using stable isotope probing
-
Lu, Y., T. Lueders, M. W. Friedrich, and R. Conrad. 2005. Detecting active methanogenic populations on rice roots using stable isotope probing. Environmental Microbiology 7: 326-336.
-
(2005)
Environmental Microbiology
, vol.7
, pp. 326-336
-
-
Lu, Y.1
Lueders, T.2
Friedrich, M.W.3
Conrad, R.4
-
22
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig, W., O. Strunk, R. Westram, L. Richter, H. Meier, Y. Kumar, A. Buchner, T. Lai, S. Steppi, G. Jobb, W. Förster, I. Brettske, S. Gerber, A. W. Ginhart, O. Gross, S. Grumann, S. Hermann, R. Jost, A. König, T. Liss, R. Lüßmann, M. May, B. Nonhoff, B. Reichel, R. Strehlow, A. Stamatakis, N. Stuckmann, A. Vilbig, M. Lenke, T. Ludwig, A. Bode, and K.-H. Schleifer. 2004. ARB: a software environment for sequence data. Nucleic Acids Research 32: 1363-1371.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Kumar, Y.6
Buchner, A.7
Lai, T.8
Steppi, S.9
Jobb, G.10
Förster, W.11
Brettske, I.12
Gerber, S.13
Ginhart, A.W.14
Gross, O.15
Grumann, S.16
Hermann, S.17
Jost, R.18
König, A.19
Liss, T.20
Lüßmann, R.21
May, M.22
Nonhoff, B.23
Reichel, B.24
Strehlow, R.25
Stamatakis, A.26
Stuckmann, N.27
Vilbig, A.28
Lenke, M.29
Ludwig, T.30
Bode, A.31
Schleifer, K.-.H.32
more..
-
23
-
-
0035206819
-
Molecular analyses of methyl-coenzyme M reductase α-subunit (mcrA) genes in rice field soil and enrichment cultures reveal the methanogenic phenotype of a novel archaeal lineage
-
Lueders, T., K. J. Chin, R. Conrad, and M. Friedrich. 2001. Molecular analyses of methyl-coenzyme M reductase α-subunit (mcrA) genes in rice field soil and enrichment cultures reveal the methanogenic phenotype of a novel archaeal lineage. Environmental Microbiology 3: 194-204.
-
(2001)
Environmental Microbiology
, vol.3
, pp. 194-204
-
-
Lueders, T.1
Chin, K.J.2
Conrad, R.3
Friedrich, M.4
-
24
-
-
70350052417
-
Ammonia oxidation kinetics determine niche speciation of nitrifying Archaea and Bacteria
-
Martens-Habbena, W., P. M. Berube, H. Urakawa, J. R. de la Torre, and D. A. Stahl. 2009. Ammonia oxidation kinetics determine niche speciation of nitrifying Archaea and Bacteria. Nature 461: 976-979.
-
(2009)
Nature
, vol.461
, pp. 976-979
-
-
Martens-Habbena, W.1
Berube, P.M.2
Urakawa, H.3
de la Torre, J.R.4
Stahl, D.A.5
-
25
-
-
84655176221
-
Biogeochemistry of tidal freshwater wetlands
-
G. M. E. Perillo, E. Wolanski, D. R. Cahoon, and M. M. Brinson (Eds.), Oxford: Elsevier
-
Megonigal, J. P., and S. C. Neubauer. 2009. Biogeochemistry of tidal freshwater wetlands. In Coastal wetlands: an integrated ecosystem approach, ed. G. M. E. Perillo, E. Wolanski, D. R. Cahoon, and M. M. Brinson, 535. Oxford: Elsevier.
-
(2009)
Coastal Wetlands: An Integrated Ecosystem Approach
, pp. 535
-
-
Megonigal, J.P.1
Neubauer, S.C.2
-
26
-
-
84942432408
-
Anaerobic metabolism: Linkages to trace gases and aerobic processes
-
W. H. Schlesinger (Ed.), Oxford: Elsevier
-
Megonigal, J. P., M. E. Hines, and P. T. Visscher. 2004. Anaerobic metabolism: Linkages to trace gases and aerobic processes. In Biogeochemistry, ed. W. H. Schlesinger, 317-424. Oxford: Elsevier.
-
(2004)
Biogeochemistry
, pp. 317-424
-
-
Megonigal, J.P.1
Hines, M.E.2
Visscher, P.T.3
-
27
-
-
0037702604
-
The role of oligohaline marshes in estuarine nutrient cycling
-
M. P. Weinstein and D. A. Kreeger (Eds.), Hingham: Kluwer
-
Merrill, J. Z., and J. C. Cornwell. 2000. The role of oligohaline marshes in estuarine nutrient cycling. In Concept and controversies in tidal marsh ecology, ed. M. P. Weinstein and D. A. Kreeger, 425-444. Hingham: Kluwer.
-
(2000)
Concept and Controversies in Tidal Marsh Ecology
, pp. 425-444
-
-
Merrill, J.Z.1
Cornwell, J.C.2
-
28
-
-
77952671350
-
Spatial structure and persistence of methanogen populations in humic bog lakes
-
Milferstedt, K., N. D. Youngblut, and R. J. Whitaker. 2010. Spatial structure and persistence of methanogen populations in humic bog lakes. The ISME Journal 4: 764-776.
-
(2010)
The ISME Journal
, vol.4
, pp. 764-776
-
-
Milferstedt, K.1
Youngblut, N.D.2
Whitaker, R.J.3
-
29
-
-
84865556003
-
Microbial oxidation and reduction of iron in the root zone and influences on metal mobility
-
A. Violante, P. M. Huang, and G. M. Gadd (Eds.), Research Triangle Park: International Union of Pure and Applied Chemistry
-
Neubauer, S. C., D. Emerson, and J. P. Megonigal. 2008. Microbial oxidation and reduction of iron in the root zone and influences on metal mobility. In Biophysico-chemical processes of heavy metals and metalloids in soil environments, ed. A. Violante, P. M. Huang, and G. M. Gadd, 339-371. Research Triangle Park: International Union of Pure and Applied Chemistry.
-
(2008)
Biophysico-Chemical Processes of Heavy Metals and Metalloids in Soil Environments
, pp. 339-371
-
-
Neubauer, S.C.1
Emerson, D.2
Megonigal, J.P.3
-
30
-
-
33646497904
-
Ammonia-oxidizing Crenarchaeota: important players in the nitrogen cycle?
-
Nicol, G. W., and C. Schleper. 2006. Ammonia-oxidizing Crenarchaeota: important players in the nitrogen cycle? Trends in Microbiology 14: 207-212.
-
(2006)
Trends in Microbiology
, vol.14
, pp. 207-212
-
-
Nicol, G.W.1
Schleper, C.2
-
31
-
-
37549027613
-
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruess, E., C. Quast, K. Knittel, B. Fuchs, W. Ludwig, J. Peplies, and F. Glockner. 2007. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Research 35: 7188-7196.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 7188-7196
-
-
Pruess, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.4
Ludwig, W.5
Peplies, J.6
Glockner, F.7
-
32
-
-
69949138467
-
Archaeal rRNA diversity and methane production in deep boreal peat
-
Putkinen, A., H. Juottonen, S. Juutinen, E. Tuittila, H. Fritze, and K. Yrjala. 2009. Archaeal rRNA diversity and methane production in deep boreal peat. FEMS Microbiology Ecology 70: 87-98.
-
(2009)
FEMS Microbiology Ecology
, vol.70
, pp. 87-98
-
-
Putkinen, A.1
Juottonen, H.2
Juutinen, S.3
Tuittila, E.4
Fritze, H.5
Yrjala, K.6
-
33
-
-
0001279280
-
Organic carbon oxidation and suppression of methane production by microbial Fe (III) oxide reduction in vegetated and unvegetated freshwater wetland sediments
-
Roden, E. E., and R. G. Wetzel. 1996. Organic carbon oxidation and suppression of methane production by microbial Fe (III) oxide reduction in vegetated and unvegetated freshwater wetland sediments. Limnology and Oceanography 41: 1733-1748.
-
(1996)
Limnology and Oceanography
, vol.41
, pp. 1733-1748
-
-
Roden, E.E.1
Wetzel, R.G.2
-
34
-
-
77955273494
-
Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota
-
Spang, A., R. Hatzenpichler, C. Brochier-Armanet, T. Rattei, P. Tischler, E. Spieck, W. Streit, D. A. Stahl, M. Wagner, and C. Schleper. 2010. Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota. Trends in Microbiology 18: 331-340.
-
(2010)
Trends in Microbiology
, vol.18
, pp. 331-340
-
-
Spang, A.1
Hatzenpichler, R.2
Brochier-Armanet, C.3
Rattei, T.4
Tischler, P.5
Spieck, E.6
Streit, W.7
Stahl, D.A.8
Wagner, M.9
Schleper, C.10
-
35
-
-
78650678415
-
Plant species traits regulate methane production in freshwater wetland soils
-
Sutton-Grier, A. E., and J. P. Megonigal. 2011. Plant species traits regulate methane production in freshwater wetland soils. Soil Biology and Biochemistry 43: 413-420.
-
(2011)
Soil Biology and Biochemistry
, vol.43
, pp. 413-420
-
-
Sutton-Grier, A.E.1
Megonigal, J.P.2
-
36
-
-
0033766069
-
Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes
-
Takai, K., and K. Horikoshi. 2000. Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes. Applied and Environmental Microbiology 66: 5066-5072.
-
(2000)
Applied and Environmental Microbiology
, vol.66
, pp. 5066-5072
-
-
Takai, K.1
Horikoshi, K.2
-
37
-
-
27644565244
-
Rhizosphere iron(III) deposition and reduction in a Juncus effuses-dominated wetland
-
Weiss, J. V., D. Emerson, and J. P. Megonigal. 2005. Rhizosphere iron(III) deposition and reduction in a Juncus effuses-dominated wetland. Soil Biology and Biochemistry 69: 1861-1870.
-
(2005)
Soil Biology and Biochemistry
, vol.69
, pp. 1861-1870
-
-
Weiss, J.V.1
Emerson, D.2
Megonigal, J.P.3
-
38
-
-
65549146402
-
Trophic links between fermenters and methanogens in a moderately acidic fen soil
-
Wüst, P., M. Horn, and H. Drake. 2009. Trophic links between fermenters and methanogens in a moderately acidic fen soil. Environmental Microbiology 11: 1395-1409.
-
(2009)
Environmental Microbiology
, vol.11
, pp. 1395-1409
-
-
Wüst, P.1
Horn, M.2
Drake, H.3
-
39
-
-
33644796427
-
Methanogenic conditions in northern peat soils
-
Yavitt, J. B., and M. Seidman-Zager. 2006. Methanogenic conditions in northern peat soils. Geomicrobiology Journal 23: 199-127.
-
(2006)
Geomicrobiology Journal
, vol.23
, pp. 127-199
-
-
Yavitt, J.B.1
Seidman-Zager, M.2
|