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Volumn 36, Issue 3, 2013, Pages 471-481

Anaerobic Metabolism in Tidal Freshwater Wetlands: II. Effects of Plant Removal on Archaeal Microbial Communities

Author keywords

Anaerobic microbial metabolism; Euryarchaeota; Methane; Methanogen; Thaumarchaeota; Tidal freshwater wetland

Indexed keywords

ANOXIC CONDITIONS; BACTERIUM; ENZYME ACTIVITY; FRESHWATER ENVIRONMENT; GROWING SEASON; INTERTIDAL ENVIRONMENT; METABOLISM; METHANOGENESIS; MICROBIAL COMMUNITY; MINERALIZATION; PLANT COMMUNITY;

EID: 84876827841     PISSN: 15592723     EISSN: 15592731     Source Type: Journal    
DOI: 10.1007/s12237-012-9496-9     Document Type: Article
Times cited : (13)

References (39)
  • 1
    • 33748799671 scopus 로고    scopus 로고
    • New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras
    • Ashelford, K. 2006. New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Applied and Environmental Microbiology 72: 5734-5741.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 5734-5741
    • Ashelford, K.1
  • 2
    • 0033765880 scopus 로고    scopus 로고
    • Persistence of selected Spartina alterniflora rhizosphere diazotrophs exposed to natural and manipulated environmental variability
    • Bagwell, C. E., and C. R. Lovell. 2000. Persistence of selected Spartina alterniflora rhizosphere diazotrophs exposed to natural and manipulated environmental variability. Applied and Environmental Microbiology 66: 4625-4633.
    • (2000) Applied and Environmental Microbiology , vol.66 , pp. 4625-4633
    • Bagwell, C.E.1    Lovell, C.R.2
  • 4
    • 33745767937 scopus 로고    scopus 로고
    • Vertical profiles of methanogenesis and methanogens in two contrasting acidic peatlands in central New York State, USA
    • Cadillo-Quiroz, H., S. Brauer, E. Yashiro, C. Sun, J. Yavitt, and S. Zinder. 2006. Vertical profiles of methanogenesis and methanogens in two contrasting acidic peatlands in central New York State, USA. Environmental Microbiology 8: 1428-1440.
    • (2006) Environmental Microbiology , vol.8 , pp. 1428-1440
    • Cadillo-Quiroz, H.1    Brauer, S.2    Yashiro, E.3    Sun, C.4    Yavitt, J.5    Zinder, S.6
  • 5
    • 42049084820 scopus 로고    scopus 로고
    • Characterization of the archaeal community in a minerotrophic fen and terminal restriction fragment length polymorphism-directed isolation of a novel hydrogenotrophic methanogen
    • Cadillo-Quiroz, H., E. Yashiro, J. Yavitt, and S. Zinder. 2008. Characterization of the archaeal community in a minerotrophic fen and terminal restriction fragment length polymorphism-directed isolation of a novel hydrogenotrophic methanogen. Applied and Environmental Microbiology 74: 2059-2068.
    • (2008) Applied and Environmental Microbiology , vol.74 , pp. 2059-2068
    • Cadillo-Quiroz, H.1    Yashiro, E.2    Yavitt, J.3    Zinder, S.4
  • 7
    • 77953326699 scopus 로고    scopus 로고
    • Diversity and community structure of archaea inhabiting the rhizoplane of two contrasting plants from an acidic bog
    • Cadillo-Quiroz, H., J. Yavitt, S. Zinder, and J. Thies. 2010. Diversity and community structure of archaea inhabiting the rhizoplane of two contrasting plants from an acidic bog. Microbial Ecology 59: 757-767.
    • (2010) Microbial Ecology , vol.59 , pp. 757-767
    • Cadillo-Quiroz, H.1    Yavitt, J.2    Zinder, S.3    Thies, J.4
  • 8
    • 0033050621 scopus 로고    scopus 로고
    • Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soils and sediments
    • Conrad, R. 1999. Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soils and sediments. FEMS Microbiology Ecology 29: 193-202.
    • (1999) FEMS Microbiology Ecology , vol.29 , pp. 193-202
    • Conrad, R.1
  • 9
    • 33745012854 scopus 로고    scopus 로고
    • Rice cluster I methanogens, an important group of Archaea producing greenhouse gas in soil
    • Conrad, R., C. Erkel, and W. Liesack. 2006. Rice cluster I methanogens, an important group of Archaea producing greenhouse gas in soil. Current Opinion in Biotechnology 17: 262-267.
    • (2006) Current Opinion in Biotechnology , vol.17 , pp. 262-267
    • Conrad, R.1    Erkel, C.2    Liesack, W.3
  • 10
    • 65249099608 scopus 로고    scopus 로고
    • Nitrifier and denitrifier molecular operational taxonomic unit compositions from sites of a freshwater estuary of Chesapeake Bay
    • Fortunato, C. S., D. B. Carlini, E. Ewers, and K. L. Bushaw-Newton. 2009. Nitrifier and denitrifier molecular operational taxonomic unit compositions from sites of a freshwater estuary of Chesapeake Bay. Canadian Journal of Microbiology 55: 333-346.
    • (2009) Canadian Journal of Microbiology , vol.55 , pp. 333-346
    • Fortunato, C.S.1    Carlini, D.B.2    Ewers, E.3    Bushaw-Newton, K.L.4
  • 12
    • 0040336333 scopus 로고    scopus 로고
    • Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microscosms
    • Grobkopf, R., S. Stubner, and W. Liesack. 1998. Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microscosms. Applied and Environmental Microbiology 64: 4983-4989.
    • (1998) Applied and Environmental Microbiology , vol.64 , pp. 4983-4989
    • Grobkopf, R.1    Stubner, S.2    Liesack, W.3
  • 15
    • 15944406459 scopus 로고    scopus 로고
    • Phenotypic characterization of Rice Cluster III archaea without prior isolation by applying quantitative polymerase chain reaction to an enrichment culture
    • Kemnitz, D., S. Kolb, and R. Conrad. 2005. Phenotypic characterization of Rice Cluster III archaea without prior isolation by applying quantitative polymerase chain reaction to an enrichment culture. Environmental Microbiology 7: 553-565.
    • (2005) Environmental Microbiology , vol.7 , pp. 553-565
    • Kemnitz, D.1    Kolb, S.2    Conrad, R.3
  • 17
    • 52949148529 scopus 로고    scopus 로고
    • Niche separation of ammonia-oxidizing bacteria across a tidal freshwater marsh
    • Laanbroek, H., and A. Speksnijder. 2008. Niche separation of ammonia-oxidizing bacteria across a tidal freshwater marsh. Environmental Microbiology 10: 3017-3025.
    • (2008) Environmental Microbiology , vol.10 , pp. 3017-3025
    • Laanbroek, H.1    Speksnijder, A.2
  • 19
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu, W. T., T. L. Marsh, H. Cheng, and L. J. Forney. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Applied and Environmental Microbiology 63: 4516-4522.
    • (1997) Applied and Environmental Microbiology , vol.63 , pp. 4516-4522
    • Liu, W.T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 20
    • 0035678560 scopus 로고    scopus 로고
    • Stability of a rhizosphere microbial community exposed to natural and manipulated environmental variability
    • Lovell, C. R., C. E. Bagwell, M. Czako, L. Marton, Y. M. Piceno, and D. B. Ringelberg. 2001. Stability of a rhizosphere microbial community exposed to natural and manipulated environmental variability. FEMS Microbiology Ecology 38: 69-76.
    • (2001) FEMS Microbiology Ecology , vol.38 , pp. 69-76
    • Lovell, C.R.1    Bagwell, C.E.2    Czako, M.3    Marton, L.4    Piceno, Y.M.5    Ringelberg, D.B.6
  • 21
    • 14344266223 scopus 로고    scopus 로고
    • Detecting active methanogenic populations on rice roots using stable isotope probing
    • Lu, Y., T. Lueders, M. W. Friedrich, and R. Conrad. 2005. Detecting active methanogenic populations on rice roots using stable isotope probing. Environmental Microbiology 7: 326-336.
    • (2005) Environmental Microbiology , vol.7 , pp. 326-336
    • Lu, Y.1    Lueders, T.2    Friedrich, M.W.3    Conrad, R.4
  • 23
    • 0035206819 scopus 로고    scopus 로고
    • Molecular analyses of methyl-coenzyme M reductase α-subunit (mcrA) genes in rice field soil and enrichment cultures reveal the methanogenic phenotype of a novel archaeal lineage
    • Lueders, T., K. J. Chin, R. Conrad, and M. Friedrich. 2001. Molecular analyses of methyl-coenzyme M reductase α-subunit (mcrA) genes in rice field soil and enrichment cultures reveal the methanogenic phenotype of a novel archaeal lineage. Environmental Microbiology 3: 194-204.
    • (2001) Environmental Microbiology , vol.3 , pp. 194-204
    • Lueders, T.1    Chin, K.J.2    Conrad, R.3    Friedrich, M.4
  • 24
    • 70350052417 scopus 로고    scopus 로고
    • Ammonia oxidation kinetics determine niche speciation of nitrifying Archaea and Bacteria
    • Martens-Habbena, W., P. M. Berube, H. Urakawa, J. R. de la Torre, and D. A. Stahl. 2009. Ammonia oxidation kinetics determine niche speciation of nitrifying Archaea and Bacteria. Nature 461: 976-979.
    • (2009) Nature , vol.461 , pp. 976-979
    • Martens-Habbena, W.1    Berube, P.M.2    Urakawa, H.3    de la Torre, J.R.4    Stahl, D.A.5
  • 25
    • 84655176221 scopus 로고    scopus 로고
    • Biogeochemistry of tidal freshwater wetlands
    • G. M. E. Perillo, E. Wolanski, D. R. Cahoon, and M. M. Brinson (Eds.), Oxford: Elsevier
    • Megonigal, J. P., and S. C. Neubauer. 2009. Biogeochemistry of tidal freshwater wetlands. In Coastal wetlands: an integrated ecosystem approach, ed. G. M. E. Perillo, E. Wolanski, D. R. Cahoon, and M. M. Brinson, 535. Oxford: Elsevier.
    • (2009) Coastal Wetlands: An Integrated Ecosystem Approach , pp. 535
    • Megonigal, J.P.1    Neubauer, S.C.2
  • 26
    • 84942432408 scopus 로고    scopus 로고
    • Anaerobic metabolism: Linkages to trace gases and aerobic processes
    • W. H. Schlesinger (Ed.), Oxford: Elsevier
    • Megonigal, J. P., M. E. Hines, and P. T. Visscher. 2004. Anaerobic metabolism: Linkages to trace gases and aerobic processes. In Biogeochemistry, ed. W. H. Schlesinger, 317-424. Oxford: Elsevier.
    • (2004) Biogeochemistry , pp. 317-424
    • Megonigal, J.P.1    Hines, M.E.2    Visscher, P.T.3
  • 27
    • 0037702604 scopus 로고    scopus 로고
    • The role of oligohaline marshes in estuarine nutrient cycling
    • M. P. Weinstein and D. A. Kreeger (Eds.), Hingham: Kluwer
    • Merrill, J. Z., and J. C. Cornwell. 2000. The role of oligohaline marshes in estuarine nutrient cycling. In Concept and controversies in tidal marsh ecology, ed. M. P. Weinstein and D. A. Kreeger, 425-444. Hingham: Kluwer.
    • (2000) Concept and Controversies in Tidal Marsh Ecology , pp. 425-444
    • Merrill, J.Z.1    Cornwell, J.C.2
  • 28
    • 77952671350 scopus 로고    scopus 로고
    • Spatial structure and persistence of methanogen populations in humic bog lakes
    • Milferstedt, K., N. D. Youngblut, and R. J. Whitaker. 2010. Spatial structure and persistence of methanogen populations in humic bog lakes. The ISME Journal 4: 764-776.
    • (2010) The ISME Journal , vol.4 , pp. 764-776
    • Milferstedt, K.1    Youngblut, N.D.2    Whitaker, R.J.3
  • 29
    • 84865556003 scopus 로고    scopus 로고
    • Microbial oxidation and reduction of iron in the root zone and influences on metal mobility
    • A. Violante, P. M. Huang, and G. M. Gadd (Eds.), Research Triangle Park: International Union of Pure and Applied Chemistry
    • Neubauer, S. C., D. Emerson, and J. P. Megonigal. 2008. Microbial oxidation and reduction of iron in the root zone and influences on metal mobility. In Biophysico-chemical processes of heavy metals and metalloids in soil environments, ed. A. Violante, P. M. Huang, and G. M. Gadd, 339-371. Research Triangle Park: International Union of Pure and Applied Chemistry.
    • (2008) Biophysico-Chemical Processes of Heavy Metals and Metalloids in Soil Environments , pp. 339-371
    • Neubauer, S.C.1    Emerson, D.2    Megonigal, J.P.3
  • 30
    • 33646497904 scopus 로고    scopus 로고
    • Ammonia-oxidizing Crenarchaeota: important players in the nitrogen cycle?
    • Nicol, G. W., and C. Schleper. 2006. Ammonia-oxidizing Crenarchaeota: important players in the nitrogen cycle? Trends in Microbiology 14: 207-212.
    • (2006) Trends in Microbiology , vol.14 , pp. 207-212
    • Nicol, G.W.1    Schleper, C.2
  • 31
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruess, E., C. Quast, K. Knittel, B. Fuchs, W. Ludwig, J. Peplies, and F. Glockner. 2007. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Research 35: 7188-7196.
    • (2007) Nucleic Acids Research , vol.35 , pp. 7188-7196
    • Pruess, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.4    Ludwig, W.5    Peplies, J.6    Glockner, F.7
  • 33
    • 0001279280 scopus 로고    scopus 로고
    • Organic carbon oxidation and suppression of methane production by microbial Fe (III) oxide reduction in vegetated and unvegetated freshwater wetland sediments
    • Roden, E. E., and R. G. Wetzel. 1996. Organic carbon oxidation and suppression of methane production by microbial Fe (III) oxide reduction in vegetated and unvegetated freshwater wetland sediments. Limnology and Oceanography 41: 1733-1748.
    • (1996) Limnology and Oceanography , vol.41 , pp. 1733-1748
    • Roden, E.E.1    Wetzel, R.G.2
  • 35
    • 78650678415 scopus 로고    scopus 로고
    • Plant species traits regulate methane production in freshwater wetland soils
    • Sutton-Grier, A. E., and J. P. Megonigal. 2011. Plant species traits regulate methane production in freshwater wetland soils. Soil Biology and Biochemistry 43: 413-420.
    • (2011) Soil Biology and Biochemistry , vol.43 , pp. 413-420
    • Sutton-Grier, A.E.1    Megonigal, J.P.2
  • 36
    • 0033766069 scopus 로고    scopus 로고
    • Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes
    • Takai, K., and K. Horikoshi. 2000. Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes. Applied and Environmental Microbiology 66: 5066-5072.
    • (2000) Applied and Environmental Microbiology , vol.66 , pp. 5066-5072
    • Takai, K.1    Horikoshi, K.2
  • 37
    • 27644565244 scopus 로고    scopus 로고
    • Rhizosphere iron(III) deposition and reduction in a Juncus effuses-dominated wetland
    • Weiss, J. V., D. Emerson, and J. P. Megonigal. 2005. Rhizosphere iron(III) deposition and reduction in a Juncus effuses-dominated wetland. Soil Biology and Biochemistry 69: 1861-1870.
    • (2005) Soil Biology and Biochemistry , vol.69 , pp. 1861-1870
    • Weiss, J.V.1    Emerson, D.2    Megonigal, J.P.3
  • 38
    • 65549146402 scopus 로고    scopus 로고
    • Trophic links between fermenters and methanogens in a moderately acidic fen soil
    • Wüst, P., M. Horn, and H. Drake. 2009. Trophic links between fermenters and methanogens in a moderately acidic fen soil. Environmental Microbiology 11: 1395-1409.
    • (2009) Environmental Microbiology , vol.11 , pp. 1395-1409
    • Wüst, P.1    Horn, M.2    Drake, H.3
  • 39
    • 33644796427 scopus 로고    scopus 로고
    • Methanogenic conditions in northern peat soils
    • Yavitt, J. B., and M. Seidman-Zager. 2006. Methanogenic conditions in northern peat soils. Geomicrobiology Journal 23: 199-127.
    • (2006) Geomicrobiology Journal , vol.23 , pp. 127-199
    • Yavitt, J.B.1    Seidman-Zager, M.2


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