-
1
-
-
0031888525
-
Major facilitator superfamily
-
Pao, S. S., Paulsen, I. T.&Saier, M. H. Jr. Major facilitator superfamily. Microbiol. Mol. Biol. Rev. 62, 1-34 (1998).
-
(1998)
Microbiol. Mol. Biol. Rev
, vol.62
, pp. 1-34
-
-
Pao, S.S.1
Paulsen, I.T.2
Saier Jr., M.H.3
-
2
-
-
0037626962
-
Regulation of phosphate acquisition in Saccharomyces cerevisiae
-
Persson, B. L. et al. Regulation of phosphate acquisition in Saccharomyces cerevisiae. Curr. Genet. 43, 225-244 (2003).
-
(2003)
Curr. Genet
, vol.43
, pp. 225-244
-
-
Persson, B.L.1
-
3
-
-
84872426733
-
Phosphate import in plants: Focus on the PHT1 transporters
-
Nussaume, L. et al. Phosphate import in plants: Focus on the PHT1 transporters. Front. Plant Sci. 2, 83 (2011).
-
(2011)
Front. Plant Sci
, vol.2
, pp. 83
-
-
Nussaume, L.1
-
4
-
-
0037328986
-
Inorganic phosphate is sensed by specific phosphate carriers and acts in concert with glucose as a nutrient signal for activation of the protein kinase A pathway in the yeast Saccharomyces cerevisiae
-
Giots, F., Donaton, M. C. V. & Thevelein, J. M. Inorganic phosphate is sensed by specific phosphate carriers and acts in concert with glucose as a nutrient signal for activation of the protein kinase A pathway in the yeast Saccharomyces cerevisiae. Mol. Microbiol. 47, 1163-1181 (2003).
-
(2003)
Mol. Microbiol
, vol.47
, pp. 1163-1181
-
-
Giots, F.1
Donaton, M.C.V.2
Thevelein, J.M.3
-
5
-
-
77649249654
-
Transport and signaling through the phosphate-binding site of the yeast Pho84 phosphate transceptor
-
Popova, Y., Thayumanavan, P., Lonati, E., Agrochao, M. & Thevelein, J. Transport and signaling through the phosphate-binding site of the yeast Pho84 phosphate transceptor. Proc. Natl Acad. Sci. USA 107, 2890-2895 (2010).
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 2890-2895
-
-
Popova, Y.1
Thayumanavan, P.2
Lonati, E.3
Agrochao, M.4
Thevelein, J.5
-
6
-
-
77649216536
-
Membrane transporters in drug development
-
Giacomini, K. M. et al. Membrane transporters in drug development. Nature Rev. Drug Discov. 9, 215-236 (2010).
-
(2010)
Nature Rev. Drug Discov
, vol.9
, pp. 215-236
-
-
Giacomini, K.M.1
-
7
-
-
1242340323
-
The ABCs of solute carriers: Physiological, pathological and therapeutic implications of human membrane transport proteins
-
Hediger, M. A. et al. The ABCs of solute carriers: physiological, pathological and therapeutic implications of human membrane transport proteins. Pflugers Arch. 447, 465-468 (2004).
-
(2004)
Pflugers Arch
, vol.447
, pp. 465-468
-
-
Hediger, M.A.1
-
8
-
-
0036316392
-
Three-dimensional structure of a bacterial oxalate transporter
-
Hirai, T. et al. Three-dimensional structure of a bacterial oxalate transporter. Nature Struct. Biol. 9, 597-600 (2002).
-
(2002)
Nature Struct. Biol
, vol.9
, pp. 597-600
-
-
Hirai, T.1
-
9
-
-
0041353145
-
Structure and mechanism of the lactose permease of Escherichia coli
-
Abramson, J. et al. Structure and mechanism of the lactose permease of Escherichia coli. Science 301, 610-615 (2003).
-
(2003)
Science
, vol.301
, pp. 610-615
-
-
Abramson, J.1
-
10
-
-
0041489951
-
Structureandmechanism of the glycerol-3-phosphate transporter from Escherichia coli
-
Huang, Y., Lemieux, M. J., Song, J., Auer, M.&Wang, D. N. Structureandmechanism of the glycerol-3-phosphate transporter from Escherichia coli. Science 301, 616-620 (2003).
-
(2003)
Science
, vol.301
, pp. 616-620
-
-
Huang, Y.1
Lemieux, M.J.2
Song, J.3
Auer, M.4
Wang, D.N.5
-
11
-
-
33646445156
-
Structure of the multidrug transporter EmrD from Escherichia coli
-
Yin, Y., He, X., Szewczyk, P., Nguyen, T. & Chang, G. Structure of the multidrug transporter EmrD from Escherichia coli. Science 312, 741-744 (2006).
-
(2006)
Science
, vol.312
, pp. 741-744
-
-
Yin, Y.1
He, X.2
Szewczyk, P.3
Nguyen, T.4
Chang, G.5
-
12
-
-
77958010505
-
Structure of a fucose transporter in an outward-open conformation
-
Dang, S. et al. Structure of a fucose transporter in an outward-open conformation. Nature 467, 734-738 (2010).
-
(2010)
Nature
, vol.467
, pp. 734-738
-
-
Dang, S.1
-
13
-
-
78751604619
-
Crystal structure of a prokaryotic homologue of themammalian oligopeptide-proton symporters
-
Newstead, S. et al. Crystal structure of a prokaryotic homologue of themammalian oligopeptide-proton symporters, PepT1and PepT2.EMBOJ.30, 417-426 (2011).
-
(2011)
Pep T1 and Pep T2. EMBOJ
, vol.30
, pp. 417-426
-
-
Newstead, S.1
-
14
-
-
84865237281
-
Alternating access mechanism in the POT family of oligopeptide transporters
-
Solcan, N. et al. Alternating access mechanism in the POT family of oligopeptide transporters. EMBO J. 31, 3411-3421 (2012).
-
(2012)
EMBO J
, vol.31
, pp. 3411-3421
-
-
Solcan, N.1
-
15
-
-
84867657593
-
Crystal structure of a bacterial homologue of glucose transporters GLUT1-4
-
Sun, L. et al. Crystal structure of a bacterial homologue of glucose transporters GLUT1-4. Nature 490, 361-366 (2012).
-
(2012)
Nature
, vol.490
, pp. 361-366
-
-
Sun, L.1
-
16
-
-
34447256364
-
Conformational change in an MFS protein: MD simulations of LacY
-
Holyoake, J. & Sansom, M. S. P. Conformational change in an MFS protein: MD simulations of LacY. Structure 15, 873-884 (2007).
-
(2007)
Structure
, vol.15
, pp. 873-884
-
-
Holyoake, J.1
Sansom, M.S.P.2
-
17
-
-
36749074450
-
Sugar binding induces an outward facing conformation of LacY
-
Smirnova, I. et al. Sugar binding induces an outward facing conformation of LacY. Proc. Natl Acad. Sci. USA 104, 16504-16509 (2007).
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 16504-16509
-
-
Smirnova, I.1
-
18
-
-
84868095500
-
Apo-intermediate in the transport cycle of lactose permease (LacY)
-
Madej, M. G., Soro, S. N. & Kaback, H. R. Apo-intermediate in the transport cycle of lactose permease (LacY). Proc. Natl Acad. Sci. USA 109, 2970-2978 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 2970-2978
-
-
Madej, M.G.1
Soro, S.N.2
Kaback, H.R.3
-
19
-
-
84964264015
-
Piriformospora indica: A novel plant growth-promoting mycorrhizal fungus
-
Varma, A., Bakshi, M., Lou, B., Hartmann, A. & Oelmueller, R. Piriformospora indica: A novel plant growth-promoting mycorrhizal fungus. Agric. Res. 1, 117-131 (2012).
-
(2012)
Agric. Res
, vol.1
, pp. 117-131
-
-
Varma, A.1
Bakshi, M.2
Lou, B.3
Hartmann, A.4
Oelmueller, R.5
-
20
-
-
77956200042
-
A phosphate transporter from the root endophytic fungus Piriformospora indica plays a role in phosphate transport to the host plant
-
Yadav, V. et al. A phosphate transporter from the root endophytic fungus Piriformospora indica plays a role in phosphate transport to the host plant. J. Biol. Chem. 285, 26532-26544 (2010).
-
(2010)
J. Biol. Chem
, vol.285
, pp. 26532-26544
-
-
Yadav, V.1
-
21
-
-
84954358022
-
The solute carrier (SLC) complement of the human genome: Phylogenetic classification reveals four major families
-
Fredriksson, R., Nordstro, K. J. V., Stephansson, O., Haglund, M. G. A. & Schioh, H. B. The solute carrier (SLC) complement of the human genome: phylogenetic classification reveals four major families. FEBS Lett. 582, 3811-3816 (2008).
-
(2008)
FEBS Lett
, vol.582
, pp. 3811-3816
-
-
Fredriksson, R.1
Nordstro, K.J.V.2
Stephansson, O.3
Haglund, M.G.A.4
Schioh, H.B.5
-
22
-
-
77249136416
-
Comparison of human solute carriers
-
Schlessinger, A. et al. Comparison of human solute carriers. Protein Sci. 19, 412-428 (2010).
-
(2010)
Protein Sci
, vol.19
, pp. 412-428
-
-
Schlessinger, A.1
-
23
-
-
78650297251
-
The structural basis of secondary active transport mechanisms
-
Forrest, L. R., Kraer, R. & Ziegler, C. The structural basis of secondary active transport mechanisms. Biochim. Biophys. Acta 1807, 167-188 (2011).
-
(2011)
Biochim. Biophys. Acta
, vol.1807
, pp. 167-188
-
-
Forrest, L.R.1
Kraer, R.2
Ziegler, C.3
-
24
-
-
84864360049
-
Mutational analysis of putative phosphate-and proton-binding sites intheSaccharomyces cerevisiaePho84phosphate:H1transceptorandits effect on signalling to the PKA and PHO pathways
-
Samyn, D. R. et al. Mutational analysis of putative phosphate-and proton-binding sites intheSaccharomyces cerevisiaePho84phosphate: H1transceptorandits effect on signalling to the PKA and PHO pathways. Biochem. J. 445, 413-422 (2012).
-
(2012)
Biochem. J
, vol.445
, pp. 413-422
-
-
Samyn, D.R.1
-
25
-
-
79955662093
-
The alternating access transport mechanism in LacY
-
Kaback, H. R., Smirnova, I., Kasho, V., Nie, Y. & Zhou, Y. The alternating access transport mechanism in LacY. J. Membr. Biol. 239, 85-93 (2011).
-
(2011)
J. Membr. Biol
, vol.239
, pp. 85-93
-
-
Kaback, H.R.1
Smirnova, I.2
Kasho, V.3
Nie, Y.4
Zhou, Y.5
-
26
-
-
0027382416
-
Coupling mechanisms in active transport
-
Krupka, R. M. Coupling mechanisms in active transport. Biochim. Biophys. Acta 1183, 105-113 (1993).
-
(1993)
Biochim. Biophys. Acta
, vol.1183
, pp. 105-113
-
-
Krupka, R.M.1
-
27
-
-
0025000575
-
High specificity of a phosphate transport protein determined by hydrogen bonds
-
Luecke, H. & Quiocho, F. A. High specificity of a phosphate transport protein determined by hydrogen bonds. Nature 347, 402-406 (1990).
-
(1990)
Nature
, vol.347
, pp. 402-406
-
-
Luecke, H.1
Quiocho, F.A.2
-
28
-
-
0038342435
-
Crystal structure of M tuberculosis ABC phosphate transport receptor: Specificity and charge compensation dominated by ion-dipole interactions
-
Vyas, N. K., Vyas, M. N. & Quiocho, F. A. Crystal structure of M tuberculosis ABC phosphate transport receptor: specificity and charge compensation dominated by ion-dipole interactions. Structure 11, 765-774 (2003).
-
(2003)
Structure
, vol.11
, pp. 765-774
-
-
Vyas, N.K.1
Vyas, M.N.2
Quiocho, F.A.3
-
29
-
-
33644842642
-
Serendipitous discovery and X-ray structure of a human phosphate binding apolipoprotein
-
Morales, R. et al. Serendipitous discovery and X-ray structure of a human phosphate binding apolipoprotein. Structure 14, 601-609 (2006).
-
(2006)
Structure
, vol.14
, pp. 601-609
-
-
Morales, R.1
-
30
-
-
0035826582
-
Arginine 454 and lysine 370 are essential for the anion specificity of the organic anion transporter, rOAT3
-
Feng, B., Dresser, M. J., Shu, Y., Johns, S. J. & Giacomini, K. M. Arginine 454 and lysine 370 are essential for the anion specificity of the organic anion transporter, rOAT3. Biochemistry 40, 5511-5520 (2001).
-
(2001)
Biochemistry
, vol.40
, pp. 5511-5520
-
-
Feng, B.1
Dresser, M.J.2
Shu, Y.3
Johns, S.J.4
Giacomini, K.M.5
-
31
-
-
0028586017
-
Regulatable promoters of Saccharomyces cerevisiae: Comparison of transcriptional activity and their use for heterologous expression
-
Mumberg, D., Muller, R. & Funk, M. Regulatable promoters of Saccharomyces cerevisiae: comparison of transcriptional activity and their use for heterologous expression. Nucleic Acids Res. 22, 5767-5768 (1994).
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 5767-5768
-
-
Mumberg, D.1
Muller, R.2
Funk, M.3
-
32
-
-
58149110771
-
Selecting optimumeukaryotic integralmembraneproteins for structure determination by rapid expression and solubilization screening
-
Li, M. et al.Selecting optimumeukaryotic integralmembraneproteins for structure determination by rapid expression and solubilization screening. J. Mol. Biol. 385, 820-830 (2009).
-
(2009)
J. Mol. Biol
, vol.385
, pp. 820-830
-
-
Li, M.1
-
34
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
Winn, M. D. et al. Overview of the CCP4 suite and current developments. Acta Crystallogr. D 67, 235-242 (2011).
-
(2011)
Acta Crystallogr
, vol.D 67
, pp. 235-242
-
-
Winn, M.D.1
-
35
-
-
77649091585
-
Structure determination using poorly diffracting membrane protein crystals-Lessons from the H1 and Na1,K1-ATPases
-
Pedersen, B. P., Morth, J. P. & Nissen, P. Structure determination using poorly diffracting membrane protein crystals-Lessons from the H1 and Na1,K1-ATPases. Acta Crystallogr. D 66, 309-313 (2010).
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 309-313
-
-
Pedersen, B.P.1
Morth, J.P.2
Nissen, P.3
-
36
-
-
77950793231
-
Experimental phasing withSHELXC/D/E: Combining chain tracing with density modification
-
Sheldrick, G. M. Experimental phasing withSHELXC/D/E: combining chain tracing with density modification. Acta Crystallogr. D 66, 479-485 (2010).
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 479-485
-
-
Sheldrick, G.M.1
-
37
-
-
0242544103
-
MIRphasing using merohedrally twinned crystals
-
Terwisscha van Scheltinga, A. C., Valegard, K., Hajdu, J.&Andersson, I.MIRphasing using merohedrally twinned crystals. Acta Crystallogr. D 59, 2017-2022 (2003).
-
(2003)
Acta Crystallogr. D
, vol.59
, pp. 2017-2022
-
-
Terwisscha Van Scheltinga, A.C.1
Valegard, K.2
Hajdu, J.3
Andersson, I.4
-
38
-
-
0242460576
-
Generation representation and flow of phase information in structure determination: Recent developments in and around SHARP 2.0
-
Bricogne, G., Vonrhein, C., Flensburg, C., Schiltz, M. & Paciorek, W. Generation, representation and flow of phase information in structure determination: recent developments in and around SHARP 2.0. Acta Crystallogr. D 59, 2023-2030 (2003).
-
(2003)
Acta Crystallogr. D
, vol.59
, pp. 2023-2030
-
-
Bricogne, G.1
Vonrhein, C.2
Flensburg, C.3
Schiltz, M.4
Paciorek, W.5
-
39
-
-
0002583957
-
An automated procedure for phase improvement by density modification. CCP4 Newsl
-
Cowtan, K.: An automated procedure for phase improvement by density modification. CCP4 Newsl. Protein Crystallogr. 31, 34-38 (1994).
-
(1994)
Protein Crystallogr
, vol.31
, pp. 34-38
-
-
Cowtan, K.1
-
40
-
-
33845489826
-
Molecular replacement in the 'twilight zone' structure determination of the non-haem iron oxygenase NovR from Streptomyces spheroides through repeated density modification of a poor molecular-replacement solution
-
Keller, S., Pojer, F., Heide, L. & Lawson, D. M. Molecular replacement in the 'twilight zone': structure determination of the non-haem iron oxygenase NovR from Streptomyces spheroides through repeated density modification of a poor molecular-replacement solution. Acta Crystallogr. D 62, 1564-1570 (2006).
-
(2006)
Acta Crystallogr. D
, vol.62
, pp. 1564-1570
-
-
Keller, S.1
Pojer, F.2
Heide, L.3
Lawson, D.M.4
-
41
-
-
84889120137
-
Improved methods for building proteinmodels in electron densitymaps and the location of errors in thesemodels
-
Jones, T. A., Zou, J. Y., Cowan,S. W.&Kjeldgaard, M.Improved methods for building proteinmodels in electron densitymaps and the location of errors in thesemodels. Acta Crystallogr. A 47, 110-119 (1991).
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
42
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams, P. D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D 66, 213-221 (2010).
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
-
43
-
-
16644381228
-
Liking likelihood
-
McCoy, A. J. Liking likelihood. Acta Crystallogr. D 60, 2169-2183 (2004).
-
(2004)
Acta Crystallogr. D
, vol.60
, pp. 2169-2183
-
-
McCoy, A.J.1
-
44
-
-
84861425552
-
Linking crystallographic model and data quality
-
Karplus, P. A. & Diederichs, K. Linking crystallographic model and data quality. Science 336, 1030-1033 (2012).
-
(2012)
Science
, vol.336
, pp. 1030-1033
-
-
Karplus, P.A.1
Diederichs, K.2
-
45
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V. B. et al. MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D 66, 12-21 (2010).
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
-
46
-
-
35748972048
-
A Voronoi diagram-based explorer of molecular channels, pores, and tunnels
-
Petrek, M., Kosinova P., Koca, J. & Otyepka, M. MOLE: A Voronoi diagram-based explorer of molecular channels, pores, and tunnels. Structure 15, 1357-1363 (2007).
-
(2007)
Structure
, vol.15
, pp. 1357-1363
-
-
Petrek, M.1
Kosinova, P.2
Koca, J.3
Mole, O.M.4
-
47
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
Baker, N. A., Sept, D., Joseph, S., Holst, M. J. & McCammon, J. A. Electrostatics of nanosystems: Application to microtubules and the ribosome. Proc. Natl Acad. Sci. USA 98, 10037-10041 (2001).
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
49
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R. C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797 (2004).
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
50
-
-
42449090264
-
PROMALS3D: A tool formultiple protein sequence and structure alignments
-
Pei, J., Kim, B.-H.&Grishin, N. V.PROMALS3D: a tool formultiple protein sequence and structure alignments. Nucleic Acids Res. 36, 2295-2300 (2008).
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 2295-2300
-
-
Pei, J.1
Kim, B.-H.2
Grishin, N.V.3
-
51
-
-
2142657817
-
A combined transmembrane topology and signal peptide prediction method
-
Kal, L., Krogh, A. & Sonnhammer, E. L. L. A combined transmembrane topology and signal peptide prediction method. J. Mol. Biol. 338, 1027-1036 (2004).
-
(2004)
J. Mol. Biol
, vol.338
, pp. 1027-1036
-
-
Kal, L.1
Krogh, A.2
Sonnhammer, E.L.L.3
-
52
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Sali, A. & Blundell, T. L. Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol. 234, 779-815 (1993).
-
(1993)
J. Mol. Biol
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
53
-
-
33749578940
-
Statistical potential for assessment and prediction of protein structures
-
Shen, M.-Y. & Sali, A. Statistical potential for assessment and prediction of protein structures. Protein Sci. 15, 2507-2524 (2006).
-
(2006)
Protein Sci
, vol.15
, pp. 2507-2524
-
-
Shen, M.-Y.1
Sali, A.2
-
54
-
-
70450106216
-
Improved prediction of protein side-chain conformations with SCWRL4
-
Krivov, G. G., Shapovalov, M. V. & Dunbrack, R. L. Jr. Improved prediction of protein side-chain conformations with SCWRL4. Proteins 77, 778-795 (2009).
-
(2009)
Proteins
, vol.77
, pp. 778-795
-
-
Krivov, G.G.1
Shapovalov, M.V.2
Dunbrack Jr., R.L.3
-
55
-
-
46249092554
-
GROMACS 4: Algorithms for highly efficient, load-balanced, and scalablemolecular simulation
-
Hess, B., Kutzner, C., van der Spoel, D. & Lindahl, E. GROMACS 4: Algorithms for highly efficient, load-balanced, and scalablemolecular simulation. J. Chem. Theory Comput. 4, 435-447 (2008).
-
(2008)
J. Chem. Theory Comput
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
56
-
-
77950106854
-
Implementation of the CHARMM Force Field in GROMACS: Analysis of protein stability effects from correction maps, virtual interaction sites, and water models
-
Bjelkmar, P., Larsson, P., Cuendet, M. A., Hess, B. & Lindahl, E. Implementation of the CHARMM Force Field in GROMACS: Analysis of protein stability effects from correction maps, virtual interaction sites, and water models. J. Chem. Theory Comput. 6, 459-466 (2010).
-
(2010)
J. Chem. Theory Comput
, vol.6
, pp. 459-466
-
-
Bjelkmar, P.1
Larsson, P.2
Cuendet, M.A.3
Hess, B.4
Lindahl, E.5
-
57
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L., Chandrasekhar, J., Madura, J. D., Impey, R. W. & Klein, M. L. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 79, 926-935 (1983).
-
(1983)
J. Chem. Phys
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
58
-
-
76249087938
-
CHARMM general force field: A force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields
-
Vanommeslaeghe, K. et al. CHARMM general force field: A force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields. J. Comput. Chem. 31, 671-690 (2010).
-
(2010)
J. Comput. Chem
, vol.31
, pp. 671-690
-
-
Vanommeslaeghe, K.1
-
59
-
-
84861060898
-
OPMdatabase andPPMweb server: Resources for positioning of proteins inmembranes
-
Lomize, M. A., Pogozheva, I. D., Joo, H.,Mosberg, H. I.& Lomize, A. L. OPMdatabase andPPMweb server: resources for positioning of proteins inmembranes. Nucleic Acids Res. 40, D370-D376 (2012).
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Lomize, M.A.1
Pogozheva, I.D.2
Joo, H.3
Mosberg, H.I.4
Lomize, A.L.5
-
60
-
-
68949149548
-
CHARMM-GUI membrane builder for mixed bilayers and its application to yeast membranes
-
Jo, S., Lim, J. B., Klauda, J. B. & Im, W. CHARMM-GUI membrane builder for mixed bilayers and its application to yeast membranes. Biophys. J. 97, 50-58 (2009).
-
(2009)
Biophys. J
, vol.97
, pp. 50-58
-
-
Jo, S.1
Lim, J.B.2
Klauda, J.B.3
Im, W.4
-
61
-
-
33750587438
-
Molecular-dynamics with coupling to an external bath
-
Berendsen, H. J. C., Postma, J. P. M., Vangunsteren, W. F., Dinola, A. & Haak, J. R. Molecular-dynamics with coupling to an external bath. J. Chem. Phys. 81, 3684-3690 (1984).
-
(1984)
J. Chem. Phys
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Vangunsteren, W.F.3
Dinola, A.4
Haak, J.R.5
-
62
-
-
33846086933
-
Canonical sampling through velocity rescaling
-
Bussi, G., Donadio, D. & Parrinello, M. Canonical sampling through velocity rescaling. J. Chem. Phys. 126, 014101 (2007).
-
(2007)
J. Chem. Phys
, vol.126
, pp. 014101
-
-
Bussi, G.1
Donadio, D.2
Parrinello, M.3
-
63
-
-
0019707626
-
Polymorphic transitions in single-crystals-A new molecular-dynamics method
-
Parrinello, M. & Rahman, A. Polymorphic transitions in single-crystals-a new molecular-dynamics method. J. Appl. Phys. 52, 7182-7190 (1981).
-
(1981)
J. Appl. Phys
, vol.52
, pp. 7182-7190
-
-
Parrinello, M.1
Rahman, A.2
|