Exon array analysis of alternative splicing of genes in SOD1G93A transgenic mice

Applied Biochemistry and Biotechnology

Volumn 170, Issue 2, 2013, Pages 301-319

  Hu, Ming ^a,c   Guo, Yansu ^a,b   Chen, Huifang ^a,c   Duan, Weisong ^a,b   Li, Chunyan ^a,b  

^a HEBEI MEDICAL UNIVERSITY   (China)

^b Institute of Cardiocerebrovascular Disease   (China)

^c HEBEI GENERAL HOSPITAL   (China)

Author keywords

Alternative splicing; Amyotrophic lateral sclerosis; Exon array; Gene expression; GO analysis; Pathway analysis

Indexed keywords

ALTERNATIVE SPLICING; AMYOTROPHIC LATERAL SCLEROSIS; EXON ARRAY; GO ANALYSIS; PATHWAY ANALYSIS;

GENE EXPRESSION; NEURODEGENERATIVE DISEASES;

MAMMALS;

ARTICLE; CONTROLLED STUDY; DNA MICROARRAY; EXON; EXON SKIPPING; FEMALE; GENOME; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TRANSGENIC MOUSE; UNINDEXED SEQUENCE;

ALTERNATIVE SPLICING; AMYOTROPHIC LATERAL SCLEROSIS; ANIMALS; DISEASE MODELS, ANIMAL; EXONS; FEMALE; GENE EXPRESSION REGULATION; HUMANS; MALE; MICE; MICE, TRANSGENIC; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEIN ISOFORMS; SPINAL CORD; SUPEROXIDE DISMUTASE; TRANSCRIPTION, GENETIC;

MUS MUSCULUS;

EID: 84876688335     PISSN: 02732289     EISSN: 15590291     Source Type: Journal    
DOI: 10.1007/s12010-013-0155-9     Document Type: Article

References (25)

1. Deng, H. X., Hentati, A., Tainer, J. A., Iqbal, Z., Cayabyab, A., Hung, W. Y., et al. (1993). Science, 261, 1047-1051.
2. Schwerk, C., & Schulze-Osthoff, K. (2005). Molecular Cell, 19, 1-13. (Pubitemid 40884653)
3. Matlin, A. J., Clark, F., & Smith, C. W. (2005). Nature Reviews Molecular Cell Biology, 6, 386-398. (Pubitemid 40637856)
4. Johnson, J. M., Castle, J., Garrett-Engele, P., Kan, Z., Loerch, P. M., Armour, C. D., et al. (2003). Science, 302, 2141-2144. (Pubitemid 38017950)
5. Affymetrix Inc.: Affymetrix White Papers: GeneChip® Exon Array Design Technical Note; GeneChip® Whole Transcript (WT) Sense Target Labeling Assay Manual v 4.0; Exon Probeset Annotations and Transcript Cluster Groupings v1.0; Alternative Transcript Analysis Methods for Exon Arrays v1.1; Identifying and Validating Alternative Splicing Events; Gene Signal Estimates from Exon Arrays v1.0; Exon Array Background Correction v1.0; Guide to Probe Logarithmic Intensity Error (PLIER) Estimation; Statistical Algorithms Reference Guide [ http://www.affymetrix.com/support/technical/whitepapers.affx ].
6. Gurney, M. E., Pu, H., Mauro, C., Chiu, A. Y., Dal Canto, M. C., Polchow, C. Y., et al. (1994). Science, 264, 1772-1775.
7. Mehranpour, P., Wang, S. S., Blanco, R. R., Li, W., Song, Q., et al. (2009). Cardiovascular and Hematological Agents in Medicinal Chemistry, 7, 251-259.
8. Kielland, A., Blom, T., Nandakumar, K. S., Holmdahl, R., Blomhoff, R., & Carlsen, H. (2009). Free Radical Biology and Medicine, 47, 760-766.
9. Boillée, S., Yamanaka, K., Lobsiger, C. S., Copeland, N. G., & Jenkins, N. A. (2006). Science, 312, 1389-1392. (Pubitemid 43839552)
10. Kieran, D., Sebastia, J., Greenway, M. J., King, M. A., Connaughton, D., et al. (2008). The Journal of Neuroscience, 28, 14056-14061.
11. Lin, L. C., Wang, Y. H., Hou, Y. C., Chang, S., Liou, K. T., Chou, Y. C., et al. (2006). Journal of Pharmacy and Pharmacology, 58, 129-135. (Pubitemid 43042005)
12. López-Bigas, N., Audit, B., Ouzounis, C., Parra, G., & Guigó, R. (2005). FEBS Letters, 579, 1900-1903. (Pubitemid 40404028)
13. Blencowe, B. J. (2006). Cell, 126, 37-47. (Pubitemid 44040990)
14. Neumann, M., Sampathu, D. M., Kwong, L. K., Truax, A. C., Micsenyi, M. C., Chou, T. T., et al. (2006). Science, 314, 130-133. (Pubitemid 44547757)
15. Kwiatkowski, T. J., Jr., Bosco, D. A., Leclerc, A. L., Tamrazian, E., Vanderburg, C. R., Russ, C., et al. (2009). Science, 323, 1205-1208.
16. Münch, C., Ebstein, M., Seefried, U., Zhu, B., Stamm, S., Landwehrmeyer, G. B., et al. (2002). Journal of Neurochemistry, 82, 594-603. (Pubitemid 34831497)
17. Kan, Z., Rouchka, E. C., Gish, W. R., & States, D. J. (2001). Genome Research, 11, 889-900. (Pubitemid 32447871)
18. Ferraiuolo, L., De Bono, J. P., Heath, P. R., Holden, H., Kasher, P., Channon, K. M., et al. (2009). Journal of Neurochemistry, 109, 1714-24.
19. Resch, A., Xing, Y., Modrek, B., Gorlick, M., Riley, R., & Lee, C. (2004). Journal of Proteome Research, 3, 76-83. (Pubitemid 38233453)
20. Nobuhiro, F., Yoshitaka, N., Popiel, H. A., Hiroki, K., Masamitsu, Y., & Tatsushi, T. (2005). FEBS Letters, 579, 3842-3848. (Pubitemid 40897734)
21. Hollams, E. M., Giles, K. M., Thomson, A. M., & Leedman, P. J. (2002). Neurochemical Research, 27, 957-980. (Pubitemid 35316096)
22. Rosonina, E., Bakowski, M. A., McCracken, S., & Blencowe, B. J. (2003). The Journal of Biological Chemistry, 278, 43034-43040. (Pubitemid 37345918)
23. Hang, X., Li, P., Li, Z., Qu, W., Yu, Y., Li, H., et al. (2009). BMC Genomics, 10, 126.
24. Musci, M. A., Hendricks-Taylor, L. R., Motto, D. G., Paskind, M., Kamens, J., Turck, C. W., et al. (1997). The Journal of Biological Chemistry, 272, 11674-11677. (Pubitemid 27202725)
25. Wang, H., Wei, B., Bismuth, G., & Rudd, C. E. (2009). Proc Natl Acad Sci, 106, 12436-12441.