Biochemical characterization of two glutamate dehydrogenases with different cofactor specificities from a hyperthermophilic archaeon Pyrobaculum calidifontis

Extremophiles

Volumn 17, Issue 3, 2013, Pages 379-389

  Wakamatsu, Taisuke ^a   Higashi, Chisato ^a   Ohmori, Taketo ^a,b   Doi, Katsumi ^a   Ohshima, Toshihisa ^a  

^a KYUSHU UNIVERSITY   (Japan)

^b OSAKA INSTITUTE OF TECHNOLOGY   (Japan)

Author keywords

Biochemical characterization; Hyperthermophilic archaeon; l Glutamate dehydrogenases; Pyrobaculum calidifontis; Thermophilic enzyme

Indexed keywords

ARCHAEA; ESCHERICHIA COLI; PYROBACULUM; PYROBACULUM CALIDIFONTIS;

EID: 84876686889     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-013-0527-7     Document Type: Article

References (42)

1. Adams MW (1993) Enzymes and proteins from organisms that grow near and above 100 degrees C. Annu Rev Microbiol 47: 627-658.
2. Amo T, Paje ML, Inagaki A, Ezaki S, Atomi H, Imanaka T (2002) Pyrobaculum calidifontis sp. nov., a novel hyperthermophilic archaeon that grows in atmospheric air. Archaea 1: 113-121.
3. Bhuiya MW, Sakuraba H, Ohshima T (2002) Temperature dependence of kinetic parameters for hyperthermophilic glutamate dehydrogenase from Aeropyrum pernix K1. Biosci Biotechnol Biochem 66: 873-876.
4. Bhuiya MW, Sakuraba H, Ohshima T, Imagawa T, Katunuma N, Tsuge H (2005) The first crystal structure of hyperthermostable NAD-dependent glutamate dehydrogenase from Pyrobaculum islandicum. J Mol Biol 345: 325-337.
5. +-dependent glutamate dehydrogenase from Halobacterium halobium. Int J Biochem 18: 785-789.
6. Bonete MJ, Camacho ML, Cadenas E (1987) A new glutamate dehydrogenase from Halobacterium halobium with different coenzyme specificity. Int J Biochem 19: 1149-1155.
7. Bonete MJ, Perez-Pomares F, Ferrer J, Camacho ML (1996) NAD-glutamate dehydrogenase from Halobacterium halobium: inhibition and activation by TCA intermediates and amino acids. Biochim Biophys Acta 1289: 14-24.
8. Bonete MJ, Pérez-Pomares F, Díaz S, Ferrer J, Oren A (2003) Occurrence of two different glutamate dehydrogenase activities in the halophilic bacterium Salinibacter ruber. FEMS Microbiol Lett 226: 181-186.
9. Bradford MM (1976) A rapid and sensitive method for the quantification of microgram quantities of proteins utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254.
10. Britton KL, Yip KS, Sedelnikova SE, Stillman TJ, Adams MW, Ma K, Maeder DL, Robb FT, Tolliday N, Vetriani C, Rice DW, Baker PJ (1999) Structure determination of the glutamate dehydrogenase from the hyperthermophile Thermococcus litoralis and its comparison with that from Pyrococcus furiosus. J Mol Biol 293: 1121-1132.
11. +-dependent enzyme. Comp Biochem Physiol A Mol Integr Physiol 131: 559-567.
12. Consalvi V, Chiaraluce R, Politi L, Gambacorta A, De Rosa M, Scandurra R (1991a) Glutamate dehydrogenase from the thermoacidophilic archaebacterium Sulfolobus solfataricus. Eur J Biochem 196: 459-467.
13. Consalvi V, Chiaraluce R, Politi L, Vaccaro R, De Rosa M, Scandurra R (1991b) Extremely thermostable glutamate dehydrogenase from the hyperthermophilic archaebacterium Pyrococcus furiosus. Eur J Biochem 202: 1189-1196.
14. Díaz S, Pérez-Pomares F, Pire C, Ferrer J, Bonete MJ (2006) Gene cloning, heterologous overexpression and optimized refolding of the NAD-glutamate dehydrogenase from Haloferax mediterranei. Extremophiles 10: 105-115.
15. Ferguson AR, Sims AP (1971) Inactivation in vivo of glutamine synthetase and NAD-specific glutamate dehydrogenase: its role in the regulation of glutamine synthesis in yeasts. J Gen Microbiol 69: 423-427.
16. Ferrer J, Pérez-Pomares F, Bonete MJ (1996) NADP-glutamate dehydrogenase from the halophilic archaeon Haloferax mediterranei: enzyme purification, N-terminal sequence and stability. FEMS Microbiol Lett 141: 59-63.
17. +-glutamate dehydrogenase in Clostridium botulinum 113B. Arch Microbiol 150: 460-464.
18. +? FEBS Lett 582: 1816-1820.
19. +-dependent glutamate dehydrogenase. FEMS Microbiol Lett 211: 37-41.
20. Helianti I, Morita Y, Murakami Y, Yokoyama K, Tamiya E (2002) Expression of two kinds of recombinant glutamate dehydrogenase from Aeropyrum pernix with different N-terminal sequence length in Escherichia coli. Appl Microbiol Biotechnol 59: 462-466.
21. Ingoldsby LM, Geoghegan KF, Hayden BM, Engel PC (2005) The discovery of four distinct glutamate dehydrogenase genes in a strain of Halobacterium salinarum. Gene 349: 237-244.
22. Kawakami R, Sakuraba H, Ohshima T (2007) Gene cloning and characterization of the very large NAD-dependent l-glutamate dehydrogenase from the psychrophile Janthinobacterium lividum, isolated from cold soil. J Bacteriol 189: 5626-5633.
23. Kimura K, Miyakawa A, Imai T, Sasakawa T (1977) Glutamate dehydrogenase from Bacillus subtilis PCI 219. I. Purification and properties. J Biochem 81: 467-476.
24. Krämer J (1970) NAD and NADP-dependent glutamate dehydrogenase in Hydrogenomonas H16. Arch Mikrobiol 71: 226-234.
25. Kujo C, Ohshima T (1998) Enzymological characteristics of the hyperthermostable NAD-dependent glutamate dehydrogenase from the archaeon Pyrobaculum islandicum and effects of denaturants and organic solvents. Appl Environ Microbiol 64: 2152-2157.
26. Lee MK, González JM, Robb F (2002) Extremely thermostable glutamate dehydrogenase (GDH) from the freshwater archaeon Thermococcus waiotapuensis: cloning and comparison with two marine hyperthermophilic GDHs. Extremophiles 6: 151-159.
27. LéJohn HB, McCrea BE (1968) Evidence for two species of glutamate dehydrogenases in Thiobacillus novellus. J Bacteriol 95: 87-94.
28. Li M, Li C, Allen A, Stanley CA, Smith TJ (2012) The structure and allosteric regulation of mammalian glutamate dehydrogenase. Arch Biochem Biophys 519: 69-80.
29. +)-dependent glutamate dehydrogenase of Clostridium symbiosum: implications for the evolution and structural basis of coenzyme specificity. Biochim Biophys Acta 1080: 91-97.
30. Lowry OH, Passonneau JV, Rock MK (1961) The stability of pyridine nucleotides. J Biol Chem 236: 2756-2759.
31. +-dependent glutamate dehydrogenase which is subject to allosteric regulation. J Bacteriol 183: 490-499.
32. Ma K, Robb FT, Adams MW (1994) Purification and characterization of NADP-specific alcohol dehydrogenase and glutamate dehydrogenase from the hyperthermophilic archaeon Thermococcus litoralis. Appl Environ Microbiol 60: 562-568.
33. Miñambres B, Olivera ER, Jensen RA, Luengo JM (2000) A new class of glutamate dehydrogenases (GDH). Biochemical and genetic characterization of the first member, the AMP-requiring NAD-specific GDH of Streptomyces clavuligerus. J Biol Chem 275: 39529-39542.
34. +-dependent glutamate dehydrogenase from Halobacterium salinarum strain NRC-36014. Extremophiles 16: 463-476.
35. Perrière G, Gouy M (1996) WWW-query: an on-line retrieval system for biological sequence banks. Biochimie 78: 364-369.
36. Sakamoto N, Kotre AM, Savageau MA (1975) Glutamate dehydrogenase from Escherichia coli: purification and properties. J Bacteriol 124: 775-783.
37. Smith EL, Austen BM, Blumenthal KM, Nyc JF (1975) Glutamate dehydrogenase. In: Boyer PD (ed) The enzymes 3rd edn, vol 11. Academic Press, NY, pp 293-367.
38. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
39. Tomita T, Miyazaki T, Miyazaki J, Kuzuyama T, Nishiyama M (2010) Hetero-oligomeric glutamate dehydrogenase from Thermus thermophilus. Microbiology 156: 3801-3813.
40. Tomita T, Kuzuyama T, Nishiyama M (2011) Structural basis for leucine-induced allosteric activation of glutamate dehydrogenase. J Biol Chem 286: 37406-37413.
41. Wang S, Feng Y, Zhang Z, Zheng B, Li N, Cao S, Matsui I, Kosugi Y (2003) Heat effect on the structure and activity of the recombinant glutamate dehydrogenase from a hyperthermophilic archaeon Pyrococcus horikoshii. Arch Biochem Biophys 411: 56-62.
42. Yip KS, Stillman TJ, Britton KL, Artymiuk PJ, Baker PJ, Sedelnikova SE, Engel PC, Pasquo A, Chiaraluce R, Consalvi V, Scandurra R, Rice DW (1995) The structure of Pyrococcus furiosus glutamate dehydrogenase reveals a key role for ion-pair networks in maintaining enzyme stability at extreme temperatures. Structure 3: 1147-1158.