Thermococcus kodakarensis has two functional PCNA homologs but only one is required for viability

Extremophiles

Volumn 17, Issue 3, 2013, Pages 453-461

  Pan, Miao ^a   Santangelo, Thomas J ^b   Čuboňová, Ľubomíra ^b   Li, Zhuo ^a   Metangmo, Harlette ^a   Ladner, Jane ^a,c   Hurwitz, Jerard ^d   Reeve, John N ^b   Kelman, Zvi ^a,c  

^a UNIVERSITY OF MARYLAND BIOTECHNOLOGY INSTITUTE   (United States)

^b OHIO STATE UNIVERSITY   (United States)

^c NATIONAL INSTITUTE OF STANDARDS AND TECHNOLOGY   (United States)

^d MEMORIAL SLOAN KETTERING CANCER CENTER   (United States)

Author keywords

Archaea; DNA replication; Genetics; PCNA; Structure; Thermococcus kodakarensis

Indexed keywords

ARCHAEA; EUKARYOTA; EURYARCHAEOTA; THERMOCOCCUS KODAKARENSIS;

EID: 84876676663     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-013-0526-8     Document Type: Article

References (29)

1. Atomi H, Fukui T, Kanai T, Morikawa M, Imanaka T (2004) Description of Thermococcus kodakaraensis sp nov, a well studied hyperthermophilic archaeon previously reported as Pyrococcus sp KOD1. Archaea 1: 263-267.
2. Berthon J, Cortez D, Forterre P (2008) Genomic context analysis in Archaea suggests previously unrecognized links between DNA replication and translation. Genome Biol 9: R71.
3. Brochier-Armanet C, Boussau B, Gribaldo S, Forterre P (2008) Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nat Rev Microbiol 6: 245-252.
4. Cann IK, Ishino S, Yuasa M, Daiyasu H, Toh H, Ishino Y (2001) Biochemical analysis of replication factor C from the hyperthermophilic archaeon Pyrococcus furiosus. J Bacteriol 183: 2614-2623.
5. Chemnitz Galal W, Pan M, Kelman Z, Hurwitz J (2012) Characterization of the DNA primase complex isolated from the archaeon, Thermococcus kodakaraensis. J Biol Chem 287: 16209-16219.
6. Chia N, Cann I, Olsen GJ (2010) Evolution of DNA replication protein complexes in eukaryotes and archaea. PLoS ONE 5: e10866.
7. Fukui T, Atomi H, Kanai T, Matsumi R, Fujiwara S, Imanaka T (2005) Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes. Genome Res 15: 352-363.
8. Hileman TH, Santangelo TJ (2012) Genetics techniques for Thermococcus kodakarensis. Front Microbiol 3: 195.
9. Indiani C, O'Donnell M (2006) The replication clamp-loading machine at work in the three domains of life. Nat Rev Mol Cell Biol 7: 751-761.
10. Ishino Y, Ishino S (2012) Rapid progress of DNA replication studies in Archaea, the third domain of life. Sci China Life Sci 55: 386-403.
11. Ishino S, Fujino S, Tomita H, Ogino H, Takao K, Daiyasu H, Kanai T, Atomi H, Ishino Y (2011) Biochemical and genetical analyses of the three mcm genes from the hyperthermophilic archaeon, Thermococcus kodakarensis. Genes Cells 16: 1176-1189.
12. Jeruzalmi D, O'Donnell M, Kuriyan J (2002) Clamp loaders and sliding clamps. Curr Opin Struct Biol 12: 217-224.
13. Kelch BA, Makino DL, O'Donnell M, Kuriyan J (2012) Clamp loader ATPases and the evolution of DNA replication machinery. BMC Biol 10: 34.
14. Kelman Z, Hurwitz J (2000) A unique organization of the protein subunits of the DNA polymerase clamp loader in the archaeon Methanobacterium thermoautotrophicum ΔH. J Biol Chem 275: 7327-7336.
15. Kelman Z, O'Donnell M (1995) Structural and functional similarities of prokaryotic and eukaryotic DNA polymerase sliding clamps. Nucleic Acids Res 23: 3613-3620.
16. Kuba Y, Ishino S, Yamagami T, Tokuhara M, Kanai T, Fujikane R, Daiyasu H, Atomi H, Ishino Y (2012) Comparative analyses of the two proliferating cell nuclear antigens from the hyperthermophilic archaeon, Thermococcus kodakarensis. Genes Cells 17: 923-937.
17. Ladner JE, Pan M, Hurwitz J, Kelman Z (2011) Crystal structures of two active proliferating cell nuclear antigens (PCNAs) encoded by Thermococcus kodakaraensis. Proc Natl Acad Sci USA 108: 2711-2716.
18. Li Z, Santangelo TJ, Čuboňová L, Reeve JN, Kelman Z (2010) Affinity purification of an archaeal DNA replication protein network. MBio 1: e00221-00210.
19. MacNeill SA (2010) Structure and function of the GINS complex, a key component of the eukaryotic replisome. Biochem J 425: 489-500.
20. Naryzhny SN, Zhao H, Lee H (2005) Proliferating cell nuclear antigen (PCNA) may function as a double homotrimer complex in the mammalian cell. J Biol Chem 280: 13888-13894.
21. Pan M, Kelman LM, Kelman Z (2011a) The archaeal PCNA proteins. Biochem Soc Trans 39: 20-24.
22. Pan M, Santangelo TJ, Li Z, Reeve JN, Kelman Z (2011b) Thermococcus kodakarensis encodes three MCM homologs but only one is essential. Nucleic Acids Res 39: 9671-9680.
23. Santangelo TJ, Reeve JN (2010) Genetic tools and manipulations of the hyperthermophilic heterotrophic archaeon Thermococcus kodakarensis. In: Horikoshi K (ed) Extremophiles handbook. Springer, Japan.
24. Santangelo TJ, Cubonova L, James CL, Reeve JN (2007) TFB1 or TFB2 is sufficient for Thermococcus kodakaraensis viability and for basal transcription in vitro. J Mol Biol 367: 344-357.
25. Spang A, Hatzenpichler R, Brochier-Armanet C, Rattei T, Tischler P, Spieck E, Streit W, Stahl DA, Wagner M, Schleper C (2010) Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota. Trends Microbiol 18: 331-340.
26. Tagashira K, Fukuda W, Matsubara M, Kanai T, Atomi H, Imanaka T (2013) Genetic studies on the virus-like regions in the genome of hyperthermophilic archaeon, Thermococcus kodakarensis. Extremophiles 17: 153-160.
27. Turner JL (1998) The use of the DNA sliding clamp in E. coli replication-how the clamp loader put clamps onto DNA and how it takes them off. Cornell University Medical College, New York.
28. Vivona JB, Kelman Z (2003) The diverse spectrum of sliding clamp interacting proteins. FEBS Lett 546: 167-172.
29. Yao NY, O'Donnell M (2012) The RFC clamp loader: structure and function. Subcell Biochem 62: 259-279.