메뉴 건너뛰기




Volumn 108, Issue 7, 2011, Pages 2711-2716

Crystal structures of two active proliferating cell nuclear antigens (PCNAs) encoded by Thermococcus kodakaraensis

Author keywords

DNA replication; Three dimensional structure

Indexed keywords

CYCLINE; DNA POLYMERASE;

EID: 79952610080     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1019179108     Document Type: Article
Times cited : (28)

References (33)
  • 2
    • 33749033347 scopus 로고    scopus 로고
    • The replication clamp-loading machine at work in the three domains of life
    • DOI 10.1038/nrm2022, PII NRM2022
    • Indiani C, O'Donnell M (2006) The replication clamp-loading machine at work in the three domains of life. Nat Rev Mol Cell Biol 7:751-761. (Pubitemid 44450459)
    • (2006) Nature Reviews Molecular Cell Biology , vol.7 , Issue.10 , pp. 751-761
    • Indiani, C.1    O'Donnell, M.2
  • 3
    • 0037523309 scopus 로고    scopus 로고
    • The diverse spectrum of sliding clamp interacting proteins
    • DOI 10.1016/S0014-5793(03)00622-7
    • Vivona JB, Kelman Z (2003) The diverse spectrum of sliding clamp interacting proteins. FEBS Lett 546:167-172. (Pubitemid 36782405)
    • (2003) FEBS Letters , vol.546 , Issue.2-3 , pp. 167-172
    • Vivona, J.B.1    Kelman, Z.2
  • 4
    • 77955273494 scopus 로고    scopus 로고
    • Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota
    • Spang A, et al. (2010) Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota. Trends Microbiol 18:331-340.
    • (2010) Trends Microbiol , vol.18 , pp. 331-340
    • Spang, A.1
  • 6
    • 8444239349 scopus 로고    scopus 로고
    • Description of Thermococcus kodakaraensis sp. nov., a well studied hyperthermophilic archaeon previously reported as Pyrococcus sp. KOD1
    • Atomi H, Fukui T, Kanai T, Morikawa M, Imanaka T (2004) Description of Thermococcus kodakaraensis sp. nov., a well studied hyperthermophilic archaeon previously reported as Pyrococcus sp. KOD1. Archaea 1:263-267. (Pubitemid 39520708)
    • (2004) Archaea , vol.1 , Issue.4 , pp. 263-267
    • Atomi, H.1    Fukui, T.2    Kanai, T.3    Morikawa, M.4    Imanaka, T.5
  • 7
    • 13544250517 scopus 로고    scopus 로고
    • Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes
    • DOI 10.1101/gr.3003105
    • Fukui T, et al. (2005) Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes. Genome Res 15:352-363. (Pubitemid 40467776)
    • (2005) Genome Research , vol.15 , Issue.3 , pp. 352-363
    • Fukui, T.1    Atomi, H.2    Kanai, T.3    Matsumi, R.4    Fujiwara, S.5    Imanaka, T.6
  • 8
    • 0029163487 scopus 로고
    • Structural and functional similarities of prokaryotic and eukaryotic DNA polymerase sliding clamps
    • Kelman Z, O'DonnellM(1995) Structural and functional similarities of prokaryotic and eukaryotic DNA polymerase sliding clamps. Nucleic Acids Res 23:3613-3620.
    • (1995) Nucleic Acids Res , vol.23 , pp. 3613-3620
    • Kelman, Z.1    O'Donnell, M.2
  • 9
    • 34548232365 scopus 로고    scopus 로고
    • Inference of Macromolecular Assemblies from Crystalline State
    • DOI 10.1016/j.jmb.2007.05.022, PII S0022283607006420
    • Krissinel E, Henrick K (2007) Inference of macromolecular assemblies from crystalline state. J Mol Biol 372:774-797. (Pubitemid 47321791)
    • (2007) Journal of Molecular Biology , vol.372 , Issue.3 , pp. 774-797
    • Krissinel, E.1    Henrick, K.2
  • 10
    • 0030592544 scopus 로고    scopus 로고
    • Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA
    • DOI 10.1016/S0092-8674(00)81347-1
    • Gulbis JM, Kelman Z, Hurwitz J, O'Donnell M, Kuriyan J (1996) Structure of the C-terminal region of p21WAF1/CIP1 complexed with human PCNA. Cell 87:297-306. (Pubitemid 26359007)
    • (1996) Cell , vol.87 , Issue.2 , pp. 297-306
    • Gulbis, J.M.1    Kelman, Z.2    Hurwitz, J.3    O'Donnell, M.4    Kuriyan, J.5
  • 11
    • 0028618183 scopus 로고
    • Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA
    • Krishna TS, Kong XP, Gary S, Burgers PM, Kuriyan J (1994) Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA. Cell 79:1233-1243.
    • (1994) Cell , vol.79 , pp. 1233-1243
    • Krishna, T.S.1    Kong, X.P.2    Gary, S.3    Burgers, P.M.4    Kuriyan, J.5
  • 12
    • 0035107856 scopus 로고    scopus 로고
    • Crystal structure of an archaeal dna sliding clamp: Proliferating cell nuclear antigen from pyrococcus furiosus
    • DOI 10.1110/ps.36401
    • Matsumiya S, Ishino Y, Morikawa K (2001) Crystal structure of an archaeal DNA sliding clamp: Proliferating cell nuclear antigen from Pyrococcus furiosus. Protein Sci 10:17-23. (Pubitemid 32221160)
    • (2001) Protein Science , vol.10 , Issue.1 , pp. 17-23
    • Matsumiya, S.1    Ishino, Y.2    Morikawa, K.3
  • 13
    • 0037377527 scopus 로고    scopus 로고
    • Intermolecular ion pairs maintain the toroidal structure of Pyrococcus furiosus PCNA
    • DOI 10.1110/ps.0234503
    • Matsumiya S, Ishino S, Ishino Y, Morikawa K (2003) Intermolecular ion pairs maintain the toroidal structure of Pyrococcus furiosus PCNA. Protein Sci 12:823-831. (Pubitemid 36348469)
    • (2003) Protein Science , vol.12 , Issue.4 , pp. 823-831
    • Matsumiya, S.1    Ishino, S.2    Ishino, Y.3    Morikawa, K.4
  • 14
    • 0033777562 scopus 로고    scopus 로고
    • The puzzle of PCNA's many partners
    • Warbrick E (2000) The puzzle of PCNA's many partners. Bioessays 22:997-1006.
    • (2000) Bioessays , vol.22 , pp. 997-1006
    • Warbrick, E.1
  • 15
    • 0036734527 scopus 로고    scopus 로고
    • Physical interaction between proliferating cell nuclear antigen and replication factor C from Pyrococcus furiosus
    • Matsumiya S, Ishino S, Ishino Y, Morikawa K (2002) Physical interaction between proliferating cell nuclear antigen and replication factor C from Pyrococcus furiosus. Genes Cells 7:911-922.
    • (2002) Genes Cells , vol.7 , pp. 911-922
    • Matsumiya, S.1    Ishino, S.2    Ishino, Y.3    Morikawa, K.4
  • 16
    • 1542682737 scopus 로고    scopus 로고
    • Archaeal DNA Replication: Eukaryal Proteins in a Bacterial Context
    • DOI 10.1146/annurev.micro.57.030502.090709
    • Grabowski B, Kelman Z (2003) Archaeal DNA replication: Eukaryal proteins in a bacterial context. Annu Rev Microbiol 57:487-516. (Pubitemid 37392953)
    • (2003) Annual Review of Microbiology , vol.57 , pp. 487-516
    • Grabowski, B.1    Kelman, Z.2
  • 17
    • 47149118187 scopus 로고    scopus 로고
    • Genomic context analysis in Archaea suggests previously unrecognized links between DNA replication and translation
    • Berthon J, Cortez D, Forterre P (2008) Genomic context analysis in Archaea suggests previously unrecognized links between DNA replication and translation. Genome Biol 9:R71.
    • (2008) Genome Biol , vol.9
    • Berthon, J.1    Cortez, D.2    Forterre, P.3
  • 18
    • 0031018324 scopus 로고    scopus 로고
    • CIP1on DNA synthesis catalyzed by the human and Saccharomyces cerevisiae polymerase δ holoenzymes
    • CIP1 on DNA synthesis catalyzed by the human and Saccharomyces cerevisiae polymerase δ holoenzymes. J Biol Chem 272:2373-2381.
    • (1997) J Biol Chem , vol.272 , pp. 2373-2381
    • Gibbs, E.1
  • 19
    • 0034741835 scopus 로고    scopus 로고
    • Funcitonal interactions of an archael sliding clamp with mammalian clamp loader and DNA polymerase δ
    • DOI 10.1046/j.1365-2443.2001.00451.x
    • Ishino Y, Tsurimoto T, Ishino S, Cann KO (2001) Functional interactions of an archaeal sliding clamp with mammalian clamp loader and DNA polymerase δ. Genes Cells 6:699-706. (Pubitemid 32791681)
    • (2001) Genes to Cells , vol.6 , Issue.8 , pp. 699-706
    • Ishino, Y.1    Tsurimoto, T.2    Ishino, S.3    Cann, I.K.O.4
  • 20
    • 0034710798 scopus 로고    scopus 로고
    • The PCNA from Thermococcus fumicolans functionally interacts with DNA polymerase δ
    • Henneke G, et al. (2000) The PCNA from Thermococcus fumicolans functionally interacts with DNA polymerase δ. Biochem Biophys Res Commun 276:600-606.
    • (2000) Biochem Biophys Res Commun , vol.276 , pp. 600-606
    • Henneke, G.1
  • 21
    • 0033214481 scopus 로고    scopus 로고
    • Isolation and characterization of a split B-type DNA polymerase from the archaeon Methanobacterium thermoautotrophicum ΔH
    • Kelman Z, Pietrokovski S, Hurwitz J (1999) Isolation and characterization of a split B-type DNA polymerase from the archaeon Methanobacterium thermoautotrophicum ΔH. J Biol Chem 274:28751-28761.
    • (1999) J Biol Chem , vol.274 , pp. 28751-28761
    • Kelman, Z.1    Pietrokovski, S.2    Hurwitz, J.3
  • 22
    • 0033213239 scopus 로고    scopus 로고
    • The finer things in X-ray diffraction data collection
    • Pflugrath JW (1999) The finer things in X-ray diffraction data collection. Acta Crystallogr D 55:1718-1725.
    • (1999) Acta Crystallogr D , vol.55 , pp. 1718-1725
    • Pflugrath, J.W.1
  • 25
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • Collaborataive Computational Project
    • Collaborataive Computational Project (1994) The CCP4 suite: Programs for protein crystallography. Acta Crystallogr D 50:760-763.
    • (1994) Acta Crystallogr D , vol.50 , pp. 760-763
  • 27
    • 34547592557 scopus 로고    scopus 로고
    • MolProbity: All-atom contacts and structure validation for proteins and nucleic acids
    • Davis IW, et al. (2007) MolProbity: All-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res 35:W375-383.
    • (2007) Nucleic Acids Res , vol.35
    • Davis, I.W.1
  • 29
    • 0742321956 scopus 로고    scopus 로고
    • Structural Basis for FEN-1 Substrate Specificity and PCNA-Mediated Activation in DNA Replication and Repair
    • DOI 10.1016/S0092-8674(03)01036-5
    • Chapados BR, et al. (2004) Structural basis for FEN-1 substrate specificity and PCNA-mediated activation in DNA replication and repair. Cell 116:39-50. (Pubitemid 38156182)
    • (2004) Cell , vol.116 , Issue.1 , pp. 39-50
    • Chapados, B.R.1    Hosfield, D.J.2    Han, S.3    Qiu, J.4    Yelent, B.5    Shen, B.6    Tainer, J.A.7
  • 30
    • 69949119760 scopus 로고    scopus 로고
    • The crystal structure of Haloferax volcanii proliferating cell nuclear antigen reveals unique surface charge characteristics due to halophilic adaptation
    • Winter JA, Christofi P, Morroll S, Bunting KA (2009) The crystal structure of Haloferax volcanii proliferating cell nuclear antigen reveals unique surface charge characteristics due to halophilic adaptation. BMC Struct Biol 9:55.
    • (2009) BMC Struct Biol , vol.9 , pp. 55
    • Winter, J.A.1    Christofi, P.2    Morroll, S.3    Bunting, K.A.4
  • 32
    • 4444221565 scopus 로고    scopus 로고
    • UCSF Chimera - A visualization system for exploratory research and analysis
    • Pettersen EF, et al. (2004) UCSF Chimera - A visualization system for exploratory research and analysis. J Comput Chem 25:1605-1612.
    • (2004) J Comput Chem , vol.25 , pp. 1605-1612
    • Pettersen, E.F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.