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Volumn 8, Issue 4, 2013, Pages

Surprisal Analysis of Transcripts Expression Levels in the Presence of Noise: A Reliable Determination of the Onset of a Tumor Phenotype

Author keywords

[No Author keywords available]

Indexed keywords

APOPTOSIS; ARTICLE; CONTROLLED STUDY; ERROR; HUMAN; MATHEMATICAL ANALYSIS; PHENOTYPE; PRECANCER; RELIABILITY; SINGULAR VALUE DECOMPOSITION; SURPRISAL ANALYSIS; THEORY; ALGORITHM; CARCINOGENESIS; EARLY DIAGNOSIS; GENE EXPRESSION PROFILING; GENETIC HETEROGENEITY; GENETIC MARKER; GENETICS; METABOLISM; MULTIGENE FAMILY; NEOPLASMS; PREDICTIVE VALUE; SIGNAL NOISE RATIO; STATISTICAL MODEL; TIME; TUMOR GENE;

EID: 84876568233     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0061554     Document Type: Article
Times cited : (15)

References (24)
  • 1
    • 81855224576 scopus 로고    scopus 로고
    • Epigenetics and genetics. MicroRNAs en route to the clinic: progress in validating and targeting microRNAs for cancer therapy
    • Kasinski AL, Slack FJ, (2011) Epigenetics and genetics. MicroRNAs en route to the clinic: progress in validating and targeting microRNAs for cancer therapy. Nat Rev Cancer 11: 849-864.
    • (2011) Nat Rev Cancer , vol.11 , pp. 849-864
    • Kasinski, A.L.1    Slack, F.J.2
  • 2
    • 84857079737 scopus 로고    scopus 로고
    • The microcosmos of cancer
    • Lujambio A, Lowe SW, (2012) The microcosmos of cancer. Nature 482: 347-355.
    • (2012) Nature , vol.482 , pp. 347-355
    • Lujambio, A.1    Lowe, S.W.2
  • 3
    • 84855484465 scopus 로고    scopus 로고
    • Molecular classification of prostate cancer using curated expression signatures
    • Markert EK, Mizuno H, Vazquez A, Levine AJ, (2011) Molecular classification of prostate cancer using curated expression signatures. Proc Natl Acad Sci U S A 108: 21276-21281.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 21276-21281
    • Markert, E.K.1    Mizuno, H.2    Vazquez, A.3    Levine, A.J.4
  • 4
    • 77953454551 scopus 로고    scopus 로고
    • Information-theoretic analysis of phenotype changes in early stages of carcinogenesis
    • Remacle F, Kravchenko-Balasha N, Levitzki A, Levine RD, (2010) Information-theoretic analysis of phenotype changes in early stages of carcinogenesis. Proc Natl Acad Sci U S A 107: 10324-10329.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 10324-10329
    • Remacle, F.1    Kravchenko-Balasha, N.2    Levitzki, A.3    Levine, R.D.4
  • 7
    • 79954521574 scopus 로고    scopus 로고
    • Defining an informativeness metric for clustering gene expression data
    • Mar JC, Wells CA, Quackenbush J, (2011) Defining an informativeness metric for clustering gene expression data. Bioinformatics 27: 1094-1100.
    • (2011) Bioinformatics , vol.27 , pp. 1094-1100
    • Mar, J.C.1    Wells, C.A.2    Quackenbush, J.3
  • 9
    • 79959677297 scopus 로고    scopus 로고
    • Protein Signaling Networks from Single Cell Fluctuations and Information Theory Profiling
    • Shin YS, Remacle F, Fan R, Hwang K, Wei W, et al. (2011) Protein Signaling Networks from Single Cell Fluctuations and Information Theory Profiling. Biophysical Journal 100: 2378-2386.
    • (2011) Biophysical Journal , vol.100 , pp. 2378-2386
    • Shin, Y.S.1    Remacle, F.2    Fan, R.3    Hwang, K.4    Wei, W.5
  • 10
    • 79952605047 scopus 로고    scopus 로고
    • Convergence of logic of cellular regulation in different premalignant cells by an information theoretic approach
    • Kravchenko-Balasha N, Remacle F, Gross A, Rotter V, Levitzki A, et al. (2011) Convergence of logic of cellular regulation in different premalignant cells by an information theoretic approach. BMC Syst Biol 5: 42.
    • (2011) BMC Syst Biol , vol.5 , pp. 42
    • Kravchenko-Balasha, N.1    Remacle, F.2    Gross, A.3    Rotter, V.4    Levitzki, A.5
  • 11
    • 33746922381 scopus 로고    scopus 로고
    • The promoters of human cell cycle genes integrate signals from two tumor suppressive pathways during cellular transformation
    • Tabach Y, Milyavsky M, Shats I, Brosh R, Zuk O, et al. (2005) The promoters of human cell cycle genes integrate signals from two tumor suppressive pathways during cellular transformation. Mol Syst Biol 1.
    • (2005) Mol Syst Biol , vol.1
    • Tabach, Y.1    Milyavsky, M.2    Shats, I.3    Brosh, R.4    Zuk, O.5
  • 12
    • 66449127909 scopus 로고    scopus 로고
    • Shift from Apoptotic to Necrotic Cell Death during Human Papillomavirus-induced Transformation of Keratinocytes
    • Kravchenko-Balasha N, Mizrachy-Schwartz S, Klein S, Levitzki A, (2009) Shift from Apoptotic to Necrotic Cell Death during Human Papillomavirus-induced Transformation of Keratinocytes. J. Biol Chem 284: 11717-11727.
    • (2009) J. Biol Chem , vol.284 , pp. 11717-11727
    • Kravchenko-Balasha, N.1    Mizrachy-Schwartz, S.2    Klein, S.3    Levitzki, A.4
  • 13
    • 67649664091 scopus 로고    scopus 로고
    • HLA ligand profiles of primary renal cell carcinoma maintained in metastases
    • Stickel JS, Weinzierl AO, Hillen N, Drews O, Schuler MM, et al. (2009) HLA ligand profiles of primary renal cell carcinoma maintained in metastases. Cancer Imm Imm 58: 1407-1417.
    • (2009) Cancer Imm Imm , vol.58 , pp. 1407-1417
    • Stickel, J.S.1    Weinzierl, A.O.2    Hillen, N.3    Drews, O.4    Schuler, M.M.5
  • 17
    • 0034730140 scopus 로고    scopus 로고
    • Singular value decomposition for genome-wide expression data processing and modeling
    • Alter O, Brown PO, Botstein D, (2000) Singular value decomposition for genome-wide expression data processing and modeling. Proc Natl Acad Sci U S A 97: 10101-10106.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 10101-10106
    • Alter, O.1    Brown, P.O.2    Botstein, D.3
  • 18
    • 0034682504 scopus 로고    scopus 로고
    • Fundamental patterns underlying gene expression profiles: Simplicity from complexity
    • Holter NS, Mitra M, Maritan A, Cieplak M, Banavar JR, et al. (2000) Fundamental patterns underlying gene expression profiles: Simplicity from complexity. Proc Natl Acad Sci U S A 97: 8409-8414.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 8409-8414
    • Holter, N.S.1    Mitra, M.2    Maritan, A.3    Cieplak, M.4    Banavar, J.R.5
  • 20
    • 2542430932 scopus 로고    scopus 로고
    • Singular value decomposition and principal component analysis
    • In: Berrar DP, Dubitzky W, Granzow M, editors, Norwell: Kluwer
    • Wall ME, Rechtsteiner A, Rochas LM (2003) Singular value decomposition and principal component analysis. In: Berrar DP, Dubitzky W, Granzow M, editors. A Practical Approach to Microarray Data Analysis. Norwell: Kluwer. pp. 91-109.
    • (2003) A Practical Approach to Microarray Data Analysis , pp. 91-109
    • Wall, M.E.1    Rechtsteiner, A.2    Rochas, L.M.3
  • 21
    • 84874632011 scopus 로고    scopus 로고
    • Free energy rhythms in S. cerevisiae: A dynamic perspective with implications for ribosomal biogenesis
    • Gross A, Li CM, Remacle F, Levine RD (2013) Free energy rhythms in S. cerevisiae: A dynamic perspective with implications for ribosomal biogenesis. Biochemistry.
    • (2013) Biochemistry
    • Gross, A.1    Li, C.M.2    Remacle, F.3    Levine, R.D.4
  • 22
    • 49249143835 scopus 로고
    • Performance Criterion for Information Theoretic Data-Analysis
    • Kinsey JL, Levine RD, (1979) Performance Criterion for Information Theoretic Data-Analysis. Chem Phys Lett 65: 413-416.
    • (1979) Chem Phys Lett , vol.65 , pp. 413-416
    • Kinsey, J.L.1    Levine, R.D.2
  • 23
    • 4243914649 scopus 로고
    • Experimental and Inherent Uncertainties in the Information Theoretic Approach
    • Alhassid Y, Levine RD, (1980) Experimental and Inherent Uncertainties in the Information Theoretic Approach. Chem Phys Lett 73: 16-20.
    • (1980) Chem Phys Lett , vol.73 , pp. 16-20
    • Alhassid, Y.1    Levine, R.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.