-
1
-
-
78650616943
-
A genomic view of 500 million years of cnidarian evolution
-
Steele, R. E., David, C. N., and Technau, U. (2011) A genomic view of 500 million years of cnidarian evolution. Trends Genet. 27, 7-13.
-
(2011)
Trends Genet.
, vol.27
, pp. 7-13
-
-
Steele, R.E.1
David, C.N.2
Technau, U.3
-
2
-
-
34247218626
-
The role of microorganisms in coral health, disease and evolution
-
Rosenberg, E., Koren, O., Reshef, L., Efrony, R., and Zilber-Rosenberg, I. (2007) The role of microorganisms in coral health, disease and evolution. Nat. Rev. Microbiol. 5, 355-362.
-
(2007)
Nat. Rev. Microbiol.
, vol.5
, pp. 355-362
-
-
Rosenberg, E.1
Koren, O.2
Reshef, L.3
Efrony, R.4
Zilber-Rosenberg, I.5
-
3
-
-
77949263555
-
How Hydra senses and destroys microbes
-
Augustin, R., Fraune, S., and Bosch, T. C. (2010) How Hydra senses and destroys microbes. Semin. Immunol. 22, 54-58.
-
(2010)
Semin. Immunol.
, vol.22
, pp. 54-58
-
-
Augustin, R.1
Fraune, S.2
Bosch, T.C.3
-
4
-
-
14344266019
-
Rising starlet: The starlet sea anemone, Nematostella vectensis
-
Darling, J. A., Reitzel, A. R., Burton, P. M., Mazza, M. E., Ryan, J. F., Sullivan, J. C., and Finnerty, J. R. (2005) Rising starlet: the starlet sea anemone, Nematostella vectensis. BioEssays 27, 211-221.
-
(2005)
BioEssays
, vol.27
, pp. 211-221
-
-
Darling, J.A.1
Reitzel, A.R.2
Burton, P.M.3
Mazza, M.E.4
Ryan, J.F.5
Sullivan, J.C.6
Finnerty, J.R.7
-
5
-
-
34447300950
-
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization
-
Putnam, N. H., Srivastava, M., Hellsten, U., Dirks, B., Chapman, J., Salamov, A., Terry, A., Shapiro, H., Lindquist, E., Kapitonov, V. V., Jurka, J., Genikhovich, G., Grigoriev, I. V., Lucas, S. M., Steele, R. E., Finnerty, J. R., Technau, U., Martindale, M. Q., and Rokhsar, D. S. (2007) Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317, 86-94.
-
(2007)
Science
, vol.317
, pp. 86-94
-
-
Putnam, N.H.1
Srivastava, M.2
Hellsten, U.3
Dirks, B.4
Chapman, J.5
Salamov, A.6
Terry, A.7
Shapiro, H.8
Lindquist, E.9
Kapitonov, V.V.10
Jurka, J.11
Genikhovich, G.12
Grigoriev, I.V.13
Lucas, S.M.14
Steele, R.E.15
Finnerty, J.R.16
Technau, U.17
Martindale, M.Q.18
Rokhsar, D.S.19
-
6
-
-
24644453461
-
Cnidarians and ancestral genetic complexity in the animal kingdom
-
Miller, D. J., Ball, E. E., and Technau, U. (2005) Cnidarians and ancestral genetic complexity in the animal kingdom. Trends Genet. 21, 536-539.
-
(2005)
Trends Genet.
, vol.21
, pp. 536-539
-
-
Miller, D.J.1
Ball, E.E.2
Technau, U.3
-
7
-
-
34548842785
-
The innate immune repertoire in Cnidaria-ancestral complexity and stochastic gene loss
-
Miller, D. J., Hemmrich, G., Ball, E. E., Hayward, D. C., Khalturin, K., Funayama, N., Agata, K., and Bosch, T. C. (2007) The innate immune repertoire in Cnidaria-ancestral complexity and stochastic gene loss. Genome Biol. 8, R59.
-
(2007)
Genome Biol.
, vol.8
-
-
Miller, D.J.1
Hemmrich, G.2
Ball, E.E.3
Hayward, D.C.4
Khalturin, K.5
Funayama, N.6
Agata, K.7
Bosch, T.C.8
-
8
-
-
33846058302
-
Rel homology domain-containing transcription factors in the cnidarian Nematostella vectensis
-
Sullivan, J. C., Kalaitzidis, D., Gilmore, T. D., and Finnerty, J. R. (2007) Rel homology domain-containing transcription factors in the cnidarian Nematostella vectensis. Dev. Genes Evol. 217, 63-72.
-
(2007)
Dev. Genes Evol.
, vol.217
, pp. 63-72
-
-
Sullivan, J.C.1
Kalaitzidis, D.2
Gilmore, T.D.3
Finnerty, J.R.4
-
9
-
-
0036781052
-
NF-κB regulation in the immune system
-
Li, Q., and Verma, I. M. (2002) NF-κB regulation in the immune system. Nat. Rev. Immunol. 2, 725-734.
-
(2002)
Nat. Rev. Immunol.
, vol.2
, pp. 725-734
-
-
Li, Q.1
Verma, I.M.2
-
10
-
-
77953496625
-
The NF-κB family of transcription factors and its regulation
-
Oeckinghaus, A., and Ghosh, S. (2009) The NF-κB family of transcription factors and its regulation. Cold Spring Harb. Perspect. Biol. 1, a000034.
-
(2009)
Cold Spring Harb. Perspect. Biol.
, vol.1
-
-
Oeckinghaus, A.1
Ghosh, S.2
-
11
-
-
67650724069
-
Regulation and function of NF-κB transcription factors in the immune system
-
Vallabhapurapu, S., and Karin, M. (2009) Regulation and function of NF-κB transcription factors in the immune system. Annu. Rev. Immunol. 27, 693-733.
-
(2009)
Annu. Rev. Immunol.
, vol.27
, pp. 693-733
-
-
Vallabhapurapu, S.1
Karin, M.2
-
12
-
-
0033523947
-
The generation of nfkb2 p52: Mechanism and efficiency
-
Heusch, M., Lin, L., Geleziunas, R., and Greene, W. C. (1999) The generation of nfkb2 p52: mechanism and efficiency. Oncogene 18, 6201-6208.
-
(1999)
Oncogene
, vol.18
, pp. 6201-6208
-
-
Heusch, M.1
Lin, L.2
Geleziunas, R.3
Greene, W.C.4
-
13
-
-
0029924035
-
A glycine-rich region in NF-κB p105 functions as a processing signal for the generation of the p50 subunit
-
Lin, L., and Ghosh, S. (1996) A glycine-rich region in NF-κB p105 functions as a processing signal for the generation of the p50 subunit. Mol. Cell. Biol. 16, 2248-2254.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 2248-2254
-
-
Lin, L.1
Ghosh, S.2
-
14
-
-
0031126395
-
IκB proteins: Structure, function and regulation
-
Whiteside, S. T., and Israël, A. (1997) IκB proteins: structure, function and regulation. Semin. Cancer Biol. 8, 75-82.
-
(1997)
Semin. Cancer Biol.
, vol.8
, pp. 75-82
-
-
Whiteside, S.T.1
Israël, A.2
-
15
-
-
0028981050
-
Activation of NF-κB requires proteolysis of the inhibitor IκB-α: Signal-induced phosphorylation of IκB-α alone does not release active NF-κB
-
Lin, Y. C., Brown, K., and Siebenlist, U. (1995) Activation of NF-κB requires proteolysis of the inhibitor IκB-α: signal-induced phosphorylation of IκB-α alone does not release active NF-κB. Proc. Natl. Acad. Sci. U.S.A. 92, 552-556.
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 552-556
-
-
Lin, Y.C.1
Brown, K.2
Siebenlist, U.3
-
16
-
-
50049112829
-
Role of nuclear IκB proteins in the regulation of host immune responses
-
Yamamoto, M., and Takeda, K. (2008) Role of nuclear IκB proteins in the regulation of host immune responses. J. Infect. Chemother. 14, 265-269.
-
(2008)
J. Infect. Chemother.
, vol.14
, pp. 265-269
-
-
Yamamoto, M.1
Takeda, K.2
-
17
-
-
33947715520
-
IκB-α: An inducible regulator of nuclear factor-βB
-
Muta, T. (2006) IκB-α: an inducible regulator of nuclear factor-βB. Vitam. Horm. 74, 301-316.
-
(2006)
Vitam. Horm.
, vol.74
, pp. 301-316
-
-
Muta, T.1
-
18
-
-
61849124795
-
Bcl-3, a multifaceted modulator of NF-κB-mediated gene transcription
-
Palmer, S., and Chen, Y. H. (2008) Bcl-3, a multifaceted modulator of NF-κB-mediated gene transcription. Immunol. Res. 42, 210-218.
-
(2008)
Immunol. Res.
, vol.42
, pp. 210-218
-
-
Palmer, S.1
Chen, Y.H.2
-
19
-
-
79952258756
-
Characterization of the core elements of the NF-κB signaling pathway of the sea anemone Nematostella vectensis
-
Wolenski, F. S., Garbati, M. R., Lubinski, T. J., Traylor-Knowles, N., Dresselhaus, E., Stefanik, D. J., Goucher, H., Finnerty, J. R., and Gilmore, T. D. (2011) Characterization of the core elements of the NF-κB signaling pathway of the sea anemone Nematostella vectensis. Mol. Cell. Biol. 31, 1076-1087.
-
(2011)
Mol. Cell. Biol.
, vol.31
, pp. 1076-1087
-
-
Wolenski, F.S.1
Garbati, M.R.2
Lubinski, T.J.3
Traylor-Knowles, N.4
Dresselhaus, E.5
Stefanik, D.J.6
Goucher, H.7
Finnerty, J.R.8
Gilmore, T.D.9
-
20
-
-
70350241235
-
Two alleles of NF-κB in the sea anemone Nematostella vectensis are widely dispersed in nature and encode proteins with distinct activities
-
Sullivan, J. C., Wolenski, F. S., Reitzel, A. M., French, C. E., Traylor-Knowles, N., Gilmore, T. D., and Finnerty, J. R. (2009) Two alleles of NF-κB in the sea anemone Nematostella vectensis are widely dispersed in nature and encode proteins with distinct activities. PLoS ONE 4, e7311.
-
(2009)
PLoS ONE
, vol.4
-
-
Sullivan, J.C.1
Wolenski, F.S.2
Reitzel, A.M.3
French, C.E.4
Traylor-Knowles, N.5
Gilmore, T.D.6
Finnerty, J.R.7
-
21
-
-
34547467781
-
Crucial roles of binding sites for NF-κB and C/EBPs in IκB-α-mediated transcriptional activation
-
Matsuo, S., Yamazaki, S., Takeshige, K., and Muta, T. (2007) Crucial roles of binding sites for NF-κB and C/EBPs in IκB-α-mediated transcriptional activation. Biochem. J. 405, 605-615.
-
(2007)
Biochem. J.
, vol.405
, pp. 605-615
-
-
Matsuo, S.1
Yamazaki, S.2
Takeshige, K.3
Muta, T.4
-
22
-
-
33749074701
-
Quantitative profiling of protein-DNA binding on microarrays
-
Ragoussis, J., Field, S., and Udalova, I. A. (2006) Quantitative profiling of protein-DNA binding on microarrays. Methods Mol. Biol. 338, 261-280.
-
(2006)
Methods Mol. Biol.
, vol.338
, pp. 261-280
-
-
Ragoussis, J.1
Field, S.2
Udalova, I.A.3
-
23
-
-
79960860669
-
Extensive characterization of NF-κB binding uncovers non-canonical motifs and advances the interpretation of genetic functional traits
-
Wong, D., Teixeira, A., Oikonomopoulos, S., Humburg, P., Lone, I. N., Saliba, D., Siggers, T., Bulyk, M., Angelov, D., Dimitrov, S., Udalova, I. A., and Ragoussis, J. (2011) Extensive characterization of NF-κB binding uncovers non-canonical motifs and advances the interpretation of genetic functional traits. Genome Biol. 12, R70.
-
(2011)
Genome Biol.
, vol.12
-
-
Wong, D.1
Teixeira, A.2
Oikonomopoulos, S.3
Humburg, P.4
Lone, I.N.5
Saliba, D.6
Siggers, T.7
Bulyk, M.8
Angelov, D.9
Dimitrov, S.10
Udalova, I.A.11
Ragoussis, J.12
-
24
-
-
0037062442
-
Quantitative prediction of NF-κB DNA-protein interactions
-
Udalova, I. A., Mott, R., Field, D., and Kwiatkowski, D. (2002) Quantitative prediction of NF-κB DNA-protein interactions. Proc. Natl. Acad. Sci. U.S.A. 99, 8167-8172.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 8167-8172
-
-
Udalova, I.A.1
Mott, R.2
Field, D.3
Kwiatkowski, D.4
-
25
-
-
33747894577
-
TM4 microarray software suite
-
Saeed, A. I., Bhagabati, N. K., Braisted, J. C., Liang, W., Sharov, V., Howe, E. A., Li, J., Thiagarajan, M., White, J. A., and Quackenbush, J. (2006) TM4 microarray software suite. Methods Enzymol. 411, 134-193.
-
(2006)
Methods Enzymol.
, vol.411
, pp. 134-193
-
-
Saeed, A.I.1
Bhagabati, N.K.2
Braisted, J.C.3
Liang, W.4
Sharov, V.5
Howe, E.A.6
Li, J.7
Thiagarajan, M.8
White, J.A.9
Quackenbush, J.10
-
26
-
-
0037311919
-
TM4: A free, opensource system for microarray data management and analysis
-
Saeed, A. I., Sharov, V., White, J., Li, J., Liang, W., Bhagabati, N., Braisted, J., Klapa, M., Currier, T., Thiagarajan, M., Sturn, A., Snuffin, M., Rezantsev, A., Popov, D., Ryltsov, A., Kostukovich, E., Borisovsky, I., Liu, Z., Vinsavich, A., Trush, V., and Quackenbush, J. (2003) TM4: a free, opensource system for microarray data management and analysis. BioTechniques 34, 374-378.
-
(2003)
BioTechniques
, vol.34
, pp. 374-378
-
-
Saeed, A.I.1
Sharov, V.2
White, J.3
Li, J.4
Liang, W.5
Bhagabati, N.6
Braisted, J.7
Klapa, M.8
Currier, T.9
Thiagarajan, M.10
Sturn, A.11
Snuffin, M.12
Rezantsev, A.13
Popov, D.14
Ryltsov, A.15
Kostukovich, E.16
Borisovsky, I.17
Liu, Z.18
Vinsavich, A.19
Trush, V.20
Quackenbush, J.21
more..
-
27
-
-
20144372620
-
High-throughput mapping of a dynamic signaling network in mammalian cells
-
Barrios-Rodiles, M., Brown, K. R., Ozdamar, B., Bose, R., Liu, Z., Donovan, R. S., Shinjo, F., Liu, Y., Dembowy, J., Taylor, I. W., Luga, V., Przulj, N., Robinson, M., Suzuki, H., Hayashizaki, Y., Jurisica, I., and Wrana, J. L. (2005) High-throughput mapping of a dynamic signaling network in mammalian cells. Science 307, 1621-1625.
-
(2005)
Science
, vol.307
, pp. 1621-1625
-
-
Barrios-Rodiles, M.1
Brown, K.R.2
Ozdamar, B.3
Bose, R.4
Liu, Z.5
Donovan, R.S.6
Shinjo, F.7
Liu, Y.8
Dembowy, J.9
Taylor, I.W.10
Luga, V.11
Przulj, N.12
Robinson, M.13
Suzuki, H.14
Hayashizaki, Y.15
Jurisica, I.16
Wrana, J.L.17
-
28
-
-
83855162723
-
Principles of dimer-specific gene regulation revealed by a comprehensive characterization of NF-κB family DNA binding
-
Siggers, T., Chang, A. B., Teixeira, A., Wong, D., Williams, K. J., Ahmed, B., Ragoussis, J., Udalova, I. A., Smale, S. T., and Bulyk, M. L. (2012) Principles of dimer-specific gene regulation revealed by a comprehensive characterization of NF-κB family DNA binding. Nat. Immunol. 13, 95-102.
-
(2012)
Nat. Immunol.
, vol.13
, pp. 95-102
-
-
Siggers, T.1
Chang, A.B.2
Teixeira, A.3
Wong, D.4
Williams, K.J.5
Ahmed, B.6
Ragoussis, J.7
Udalova, I.A.8
Smale, S.T.9
Bulyk, M.L.10
-
29
-
-
22144454973
-
Origin of the Eumetazoa: Testing ecological predictions of molecular clocks against the Proterozoic fossil record
-
Peterson, K. J., and Butterfield, N. J. (2005) Origin of the Eumetazoa: testing ecological predictions of molecular clocks against the Proterozoic fossil record. Proc. Natl. Acad. Sci. U.S.A. 102, 9547-9552.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 9547-9552
-
-
Peterson, K.J.1
Butterfield, N.J.2
-
30
-
-
78650811457
-
Structure-function relationship of cytoplasmic and nuclear IκB proteins: An in silico analysis
-
Manavalan, B., Basith, S., Choi, Y. M., Lee, G., and Choi, S. (2010) Structure-function relationship of cytoplasmic and nuclear IκB proteins: an in silico analysis. PLoS ONE 5, e15782.
-
(2010)
PLoS ONE
, vol.5
-
-
Manavalan, B.1
Basith, S.2
Choi, Y.M.3
Lee, G.4
Choi, S.5
-
31
-
-
42749093043
-
The nuclear IκB protein IκBα specifically binds NF-κB p50 homodimers and forms a ternary complex on κb DNA
-
Trinh, D. V., Zhu, N., Farhang, G., Kim, B. J., and Huxford, T. (2008) The nuclear IκB protein IκBα specifically binds NF-κB p50 homodimers and forms a ternary complex on κB DNA. J. Mol. Biol. 379, 122-135.
-
(2008)
J. Mol. Biol.
, vol.379
, pp. 122-135
-
-
Trinh, D.V.1
Zhu, N.2
Farhang, G.3
Kim, B.J.4
Huxford, T.5
-
32
-
-
0142105387
-
Genetic analysis of NF-κB/Rel transcription factors defines functional specificities
-
Hoffmann, A., Leung, T. H., and Baltimore, D. (2003) Genetic analysis of NF-κB/Rel transcription factors defines functional specificities. EMBO J. 22, 5530-5539.
-
(2003)
EMBO J.
, vol.22
, pp. 5530-5539
-
-
Hoffmann, A.1
Leung, T.H.2
Baltimore, D.3
-
33
-
-
0028979476
-
Structure of the NF-κB p50 homodimer bound to DNA
-
Müller, C. W., Rey, F. A., Sodeoka, M., Verdine, G. L., and Harrison, S. C. (1995) Structure of the NF-κB p50 homodimer bound to DNA. Nature 373, 311-317.
-
(1995)
Nature
, vol.373
, pp. 311-317
-
-
Müller, C.W.1
Rey, F.A.2
Sodeoka, M.3
Verdine, G.L.4
Harrison, S.C.5
-
34
-
-
0028979479
-
Structure of NF-κB p50 homodimer bound to a κb site
-
Ghosh, G., van Duyne, G., Ghosh, S., and Sigler, P. B. (1995) Structure of NF-κB p50 homodimer bound to a κB site. Nature 373, 303-310.
-
(1995)
Nature
, vol.373
, pp. 303-310
-
-
Ghosh, G.1
Van Duyne, G.2
Ghosh, S.3
Sigler, P.B.4
-
36
-
-
33646006080
-
IL-1β-specific upregulation of neutrophil gelatinase-associated lipocalin is controlled by IκB-α
-
Cowland, J. B., Muta, T., and Borregaard, N. (2006) IL-1β-specific upregulation of neutrophil gelatinase-associated lipocalin is controlled by IκB-α. J. Immunol. 176, 5559-5566.
-
(2006)
J. Immunol.
, vol.176
, pp. 5559-5566
-
-
Cowland, J.B.1
Muta, T.2
Borregaard, N.3
-
37
-
-
79952591283
-
The measles virus v protein binds to p65 (RelA) to suppress NF-κB activity
-
Schuhmann, K. M., Pfaller, C. K., and Conzelmann, K. K. (2011) The measles virus V protein binds to p65 (RelA) to suppress NF-κB activity. J. Virol. 85, 3162-3171.
-
(2011)
J. Virol.
, vol.85
, pp. 3162-3171
-
-
Schuhmann, K.M.1
Pfaller, C.K.2
Conzelmann, K.K.3
-
38
-
-
68349111829
-
IκB genes encoded in Cotesia plutellae bracovirus suppress an antiviral response and enhance baculovirus pathogenicity against the diamondback moth, Plutella xylostella
-
Bae, S., and Kim, Y. (2009) IκB genes encoded in Cotesia plutellae bracovirus suppress an antiviral response and enhance baculovirus pathogenicity against the diamondback moth, Plutella xylostella. J. Invertebr. Pathol. 102, 79-87.
-
(2009)
J. Invertebr. Pathol.
, vol.102
, pp. 79-87
-
-
Bae, S.1
Kim, Y.2
|