-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
70350418643
-
The regulation of cnidocyte discharge
-
Anderson, P. A. V., and C. Bouchard. 2009. The regulation of cnidocyte discharge. Toxicon 54:1046-1053.
-
(2009)
Toxicon
, vol.54
, pp. 1046-1053
-
-
Anderson, P.A.V.1
Bouchard, C.2
-
3
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey, T. L., and C. Elkan. 1994. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol. 2:28-36.
-
(1994)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
4
-
-
23744508482
-
Perspectives on mucus secretion in reef corals
-
Brown, B. E., and J. C. Bythell. 2005. Perspectives on mucus secretion in reef corals. Mar. Ecol. Prog. Ser. 296:291-309.
-
(2005)
Mar. Ecol. Prog. Ser.
, vol.296
, pp. 291-309
-
-
Brown, B.E.1
Bythell, J.C.2
-
5
-
-
38549096565
-
JASPAR, the open access database of transcription factor-binding profiles: New content and tools in the 2008 update
-
DOI 10.1093/nar/gkm955
-
Bryne, J. C., et al. 2008. JASPAR, the open access database of transcription factor-binding profiles new content and tools in the 2008 update. Nucleic Acids Res. 36:D102-D106. (Pubitemid 351149704)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Bryne, J.C.1
Valen, E.2
Tang, M.-H.E.3
Marstrand, T.4
Winther, O.5
Da, P.I.6
Krogh, A.7
Lenhard, B.8
Sandelin, A.9
-
6
-
-
77950080387
-
The dynamic genome of Hydra
-
Chapman, J. A., et al. 2010. The dynamic genome of Hydra. Nature 464: 592-596.
-
(2010)
Nature
, vol.464
, pp. 592-596
-
-
Chapman, J.A.1
-
7
-
-
51249095133
-
The IKK-related kinases: From innate immunity to oncogenesis
-
Clément, J. F., S. Meloche, and M. J. Servant. 2008. The IKK-related kinases: from innate immunity to oncogenesis. Cell Res. 18:889-899.
-
(2008)
Cell Res.
, vol.18
, pp. 889-899
-
-
Clément, J.F.1
Meloche, S.2
Servant, M.J.3
-
8
-
-
0038005018
-
DAVID: Database for Annotation, Visualization, and Integrated Discovery
-
Dennis, G., Jr., et al. 2003. DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol. 4:P3.
-
(2003)
Genome Biol.
, vol.4
-
-
Dennis Jr., G.1
-
9
-
-
67649858793
-
Two roles for the Drosophila IKK complex in the activation of Relish and the induction of antimicrobial peptide genes
-
Ertürk-Hasdemir, D., et al. 2009. Two roles for the Drosophila IKK complex in the activation of Relish and the induction of antimicrobial peptide genes. Proc. Natl. Acad. Sci. U. S. A. 106:9779-9784.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 9779-9784
-
-
Ertürk-Hasdemir, D.1
-
10
-
-
18944375402
-
Histology and sexual reproduction of the anemone Nematostella vectensis Stephenson 1935
-
Frank, P., and J. S. Bleakney. 1976. Histology and sexual reproduction of the anemone Nematostella vectensis Stephenson 1935. J. Nat. Hist. 10:441-449.
-
(1976)
J. Nat. Hist.
, vol.10
, pp. 441-449
-
-
Frank, P.1
Bleakney, J.S.2
-
11
-
-
77950022029
-
Histone acetyltransferase p300 is a coactivator for transcription factor REL and is C-terminally truncated in the human diffuse large B-cell lymphoma cell line RC-K8
-
Garbati, M. R., G. Alço, and T. D. Gilmore. 2010. Histone acetyltransferase p300 is a coactivator for transcription factor REL and is C-terminally truncated in the human diffuse large B-cell lymphoma cell line RC-K8. Cancer Lett. 291:237-245.
-
(2010)
Cancer Lett.
, vol.291
, pp. 237-245
-
-
Garbati, M.R.1
Alço, G.2
Gilmore, T.D.3
-
12
-
-
58149479430
-
Ser484 and Ser494 in REL are the major sites of IKK phosphorylation in vitro: Evidence that IKK does not directly enhance GAL4-REL transactivation
-
Garbati, M. R., and T. D. Gilmore. 2008. Ser484 and Ser494 in REL are the major sites of IKK phosphorylation in vitro: evidence that IKK does not directly enhance GAL4-REL transactivation. Gene Expr. 14:195-205.
-
(2008)
Gene Expr.
, vol.14
, pp. 195-205
-
-
Garbati, M.R.1
Gilmore, T.D.2
-
13
-
-
38349195146
-
The transcription factor NF-κB in the demosponge Amphimedon queenslandica: Insights on the evolutionary origin of the Rel homology domain
-
Gauthier, M., and B. M. Degnan. 2008. The transcription factor NF-κB in the demosponge Amphimedon queenslandica: insights on the evolutionary origin of the Rel homology domain. Dev. Genes Evol. 218:23-32.
-
(2008)
Dev. Genes Evol.
, vol.218
, pp. 23-32
-
-
Gauthier, M.1
Degnan, B.M.2
-
14
-
-
4444376712
-
Signaling to NF-κB
-
Hayden, M. S., and S. Ghosh. 2004. Signaling to NF-κB. Genes Dev. 18: 2195-2224.
-
(2004)
Genes Dev.
, vol.18
, pp. 2195-2224
-
-
Hayden, M.S.1
Ghosh, S.2
-
15
-
-
38849199203
-
Shared principles in NF-κB signaling
-
Hayden, M. S., and S. Ghosh. 2008. Shared principles in NF-κB signaling. Cell 132:344-362.
-
(2008)
Cell
, vol.132
, pp. 344-362
-
-
Hayden, M.S.1
Ghosh, S.2
-
16
-
-
33750433585
-
Manipulation of the nuclear factor-κB pathway and the innate immune response by viruses
-
DOI 10.1038/sj.onc.1209941, PII 1209941
-
Hiscott, J., T. L. Nguyen, M. Arguello, P. Nakhaei, and S. Paz. 2006. Manipulation of the nuclear factor-κB pathway and the innate immune response by viruses. Oncogene 25:6844-6867. (Pubitemid 44657856)
-
(2006)
Oncogene
, vol.25
, Issue.51
, pp. 6844-6867
-
-
Hiscott, J.1
Nguyen, T.-L.A.2
Arguello, M.3
Nakhaei, P.4
Paz, S.5
-
17
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang, D. W., B. T. Sherman, and R. A. Lempicki. 2009. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4:44-57.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
18
-
-
65649114699
-
Phosphorylation of the tumor suppressor CYLD by the breast cancer oncogene IKK? Promotes cell transformation
-
Hutti, J. E., et al. 2009. Phosphorylation of the tumor suppressor CYLD by the breast cancer oncogene IKK? promotes cell transformation. Mol. Cell 34:461-472.
-
(2009)
Mol. Cell
, vol.34
, pp. 461-472
-
-
Hutti, J.E.1
-
19
-
-
56249095458
-
Deletion analysis and alternative splicing define a transactivation inhibitory domain in human oncoprotein REL
-
Leeman, J. R., M. A. Weniger, T. F. Barth, and T. D. Gilmore. 2008. Deletion analysis and alternative splicing define a transactivation inhibitory domain in human oncoprotein REL. Oncogene 27:6770-6781.
-
(2008)
Oncogene
, vol.27
, pp. 6770-6781
-
-
Leeman, J.R.1
Weniger, M.A.2
Barth, T.F.3
Gilmore, T.D.4
-
20
-
-
62649173566
-
Anatomy and development of the nervous system of Nematostella vectensis, an anthozoan cnidarian
-
Marlow, H. Q., M. Srivastava, D. Q. Matus, D. Rokhsar, and M. Q. Martindale. 2009. Anatomy and development of the nervous system of Nematostella vectensis, an anthozoan cnidarian. Dev. Neurobiol. 69:235-254.
-
(2009)
Dev. Neurobiol.
, vol.69
, pp. 235-254
-
-
Marlow, H.Q.1
Srivastava, M.2
Matus, D.Q.3
Rokhsar, D.4
Martindale, M.Q.5
-
21
-
-
66749182204
-
Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx
-
Meyer, E., et al. 2009. Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx. BMC Genomics 10:219.
-
(2009)
BMC Genomics
, vol.10
, pp. 219
-
-
Meyer, E.1
-
22
-
-
34548842785
-
The innate immune repertoire in cnidaria-ancestral complexity and stochastic gene loss
-
Miller, D. J., et al. 2007. The innate immune repertoire in cnidaria-ancestral complexity and stochastic gene loss. Genome Biol. 8:R59.
-
(2007)
Genome Biol.
, vol.8
-
-
Miller, D.J.1
-
23
-
-
33750470416
-
Nuclear factor-κB pathways in Drosophila
-
Minakhina, S., and R. Steward. 2006. Nuclear factor-κB pathways in Drosophila. Oncogene 25:6749-6757.
-
(2006)
Oncogene
, vol.25
, pp. 6749-6757
-
-
Minakhina, S.1
Steward, R.2
-
24
-
-
0028987479
-
Stimulation of NF-κB-mediated transcription by mutant derivatives of the latent membrane protein of Epstein-Barr virus
-
Mitchell, T., and B. Sugden. 1995. Stimulation of NF-κB-mediated transcription by mutant derivatives of the latent membrane protein of Epstein-Barr virus. J. Virol. 69:2968-2976.
-
(1995)
J. Virol.
, vol.69
, pp. 2968-2976
-
-
Mitchell, T.1
Sugden, B.2
-
25
-
-
61849124795
-
Bcl-3, a multifaceted modulator of NF-κB-mediated gene transcription
-
Palmer, S., and Y. H. Chen. 2008. Bcl-3, a multifaceted modulator of NF-κB-mediated gene transcription. Immunol. Res. 42:210-218.
-
(2008)
Immunol. Res.
, vol.42
, pp. 210-218
-
-
Palmer, S.1
Chen, Y.H.2
-
26
-
-
22144454973
-
Origin of the Eumetazoa: Testing ecological predictions of molecular clocks against the Proterozoic fossil record
-
Peterson, K. J., and N. J. Butterfield. 2005. Origin of the Eumetazoa: testing ecological predictions of molecular clocks against the Proterozoic fossil record. Proc. Natl. Acad. Sci. U. S. A. 102:9547-9552.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 9547-9552
-
-
Peterson, K.J.1
Butterfield, N.J.2
-
27
-
-
2342536996
-
Estimating metazoan divergence times with a molecular clock
-
Peterson, K. J., et al. 2004. Estimating metazoan divergence times with a molecular clock. Proc. Natl. Acad. Sci. U. S. A. 101:6536-6541.
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 6536-6541
-
-
Peterson, K.J.1
-
28
-
-
34447300950
-
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization
-
DOI 10.1126/science.1139158
-
Putnam, N. H., et al. 2007. Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317:86-94. (Pubitemid 47056460)
-
(2007)
Science
, vol.317
, Issue.5834
, pp. 86-94
-
-
Putnam, N.H.1
Srivastava, M.2
Hellsten, U.3
Dirks, B.4
Chapman, J.5
Salamov, A.6
Terry, A.7
Shapiro, H.8
Lindquist, E.9
Kapitonov, V.V.10
Jurka, J.11
Genikhovich, G.12
Grigoriev, I.V.13
Lucas, S.M.14
Steele, R.E.15
Finnerty, J.R.16
Technau, U.17
Martindale, M.Q.18
Rokhsar, D.S.19
-
29
-
-
46449102022
-
Global population genetic structure of the starlet anemone Nematostella vectensis: Multiple introductions and implications for conservation policy
-
Reitzel, A. R., J. A. Darling, J. C. Sullivan, and J. R. Finnerty. 2008. Global population genetic structure of the starlet anemone Nematostella vectensis: multiple introductions and implications for conservation policy. Biol. Invasions 10:1197-1213.
-
(2008)
Biol. Invasions
, vol.10
, pp. 1197-1213
-
-
Reitzel, A.R.1
Darling, J.A.2
Sullivan, J.C.3
Finnerty, J.R.4
-
30
-
-
0031596724
-
Nuclear localization of IκBα is mediated by the second ankyrin repeat: The IκBα ankyrin repeats define a novel class of cis-acting nuclear import sequences
-
Sachdev, S., A. Hoffmann, and M. Hannink. 1998. Nuclear localization of IκBα is mediated by the second ankyrin repeat: the IκBα ankyrin repeats define a novel class of cis-acting nuclear import sequences. Mol. Cell. Biol. 18:2524-2534.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 2524-2534
-
-
Sachdev, S.1
Hoffmann, A.2
Hannink, M.3
-
31
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML Web servers
-
Stamatakis, A., P. Hoover, and J. Rougemont. 2008. A rapid bootstrap algorithm for the RAxML Web servers. Syst. Biol. 57:758-771.
-
(2008)
Syst. Biol.
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
32
-
-
0242406714
-
Deletion of either C-terminal transactivation subdomain enhances the in vitro transforming activity of human transcription factor REL in chicken spleen cells
-
Starczynowski, D. T., J. G. Reynolds, and T. D. Gilmore. 2003. Deletion of either C-terminal transactivation subdomain enhances the in vitro transforming activity of human transcription factor REL in chicken spleen cells. Oncogene 22:6928-6936.
-
(2003)
Oncogene
, vol.22
, pp. 6928-6936
-
-
Starczynowski, D.T.1
Reynolds, J.G.2
Gilmore, T.D.3
-
33
-
-
33846058302
-
Rel homology domain-containing transcription factors in the cnidarian Nematostella vectensis
-
Sullivan, J. C., D. Kalaitzidis, T. D. Gilmore, and J. R. Finnerty. 2007. Rel homology domain-containing transcription factors in the cnidarian Nematostella vectensis. Dev. Genes Evol. 217:63-72.
-
(2007)
Dev. Genes Evol.
, vol.217
, pp. 63-72
-
-
Sullivan, J.C.1
Kalaitzidis, D.2
Gilmore, T.D.3
Finnerty, J.R.4
-
34
-
-
33644875994
-
StellaBase: The Nematostella vectensis genomics database
-
Sullivan, J. C., et al. 2006. StellaBase: the Nematostella vectensis genomics database. Nucleic Acids Res. 34:D495-D499.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Sullivan, J.C.1
-
35
-
-
70350241235
-
Two alleles of NF-κB in the sea anemone Nematostella vectensis are widely dispersed in nature and encode proteins with distinct activities
-
Sullivan, J. C., et al. 2009. Two alleles of NF-κB in the sea anemone Nematostella vectensis are widely dispersed in nature and encode proteins with distinct activities. PLoS One 4:e7311.
-
(2009)
PLoS One
, vol.4
-
-
Sullivan, J.C.1
-
36
-
-
47849120873
-
Contradictory functions of NF-κB in liver physiology and cancer
-
Vainer, G. W., E. Pikarsky, and Y. Ben-Neriah. 2008. Contradictory functions of NF-κB in liver physiology and cancer. Cancer Lett. 267:182-188.
-
(2008)
Cancer Lett.
, vol.267
, pp. 182-188
-
-
Vainer, G.W.1
Pikarsky, E.2
Ben-Neriah, Y.3
-
37
-
-
55549147187
-
Cellular mechanisms of Cnidarian bleaching: Stress causes the collapse of symbiosis
-
Weis, V. M. 2008. Cellular mechanisms of Cnidarian bleaching: stress causes the collapse of symbiosis. J. Exp. Biol. 211:3059-3066.
-
(2008)
J. Exp. Biol.
, vol.211
, pp. 3059-3066
-
-
Weis, V.M.1
-
38
-
-
59349117885
-
The N-terminal half of the Drosophila Rel/NF-κB factor Relish, REL-68, constitutively activates transcription of specific Relish target genes
-
Wiklund, M. L., S. Steinert, A. Junell, D. Hultmark, and S. Stöven. 2009. The N-terminal half of the Drosophila Rel/NF-κB factor Relish, REL-68, constitutively activates transcription of specific Relish target genes. Dev. Comp. Immunol. 33:690-696.
-
(2009)
Dev. Comp. Immunol.
, vol.33
, pp. 690-696
-
-
Wiklund, M.L.1
Steinert, S.2
Junell, A.3
Hultmark, D.4
Stöven, S.5
-
39
-
-
27844493287
-
Helicase89B is a Mot1p/BTAF1 homologue that mediates an antimicrobial response in Drosophila
-
Yagi, Y., and Y. T. Ip. 2005. Helicase89B is a Mot1p/BTAF1 homologue that mediates an antimicrobial response in Drosophila. EMBO Rep. 6:1088-1094.
-
(2005)
EMBO Rep.
, vol.6
, pp. 1088-1094
-
-
Yagi, Y.1
Ip, Y.T.2
-
40
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
DOI 10.1101/gr.074492.107
-
Zerbino, D. R., and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829. (Pubitemid 351645072)
-
(2008)
Genome Research
, vol.18
, Issue.5
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
41
-
-
0028216491
-
BCL3 encodes a nuclear protein which can alter the subcellular location of NF-κB proteins
-
Zhang, Q., J. A. Didonato, M. Karin, and T. W. McKeithan. 1994. BCL3 encodes a nuclear protein which can alter the subcellular location of NF-κB proteins. Mol. Cell. Biol. 14:3915-3926.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 3915-3926
-
-
Zhang, Q.1
Didonato, J.A.2
Karin, M.3
McKeithan, T.W.4
|