DNA barcodes for insects

Methods in Molecular Biology

Volumn 858, Issue , 2012, Pages 17-46

  Wilson, John James ^a  

^a UNIVERSITY OF GUELPH   (Canada)

Author keywords

BOLD; Cytochrome oxidase; Databasing; DNA amplification; DNA barcoding; DNA extraction; High throughput; Sequence aligning; Sequence editing; Sequencing; Tissue subsampling

Indexed keywords

CYTOCHROME C OXIDASE; DNA;

ARTICLE; DNA BARCODING; DNA LIBRARY; DNA SEQUENCE; INSECT GENETICS; MITOCHONDRION; NONHUMAN; PRIORITY JOURNAL; SPECIES IDENTIFICATION; ANIMAL; GENETICS; INSECT; ISOLATION AND PURIFICATION; METHODOLOGY; POLYMERASE CHAIN REACTION;

ANIMALS; DNA; DNA BARCODING, TAXONOMIC; INSECTS; POLYMERASE CHAIN REACTION;

EID: 84876500612     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-591-6_3     Document Type: Article

References (26)

1. Floyd R, Wilson JJ, Hebert PDN (2009) DNA barcodes and insect biodiversity. In: Footit RG, Adler PH (eds) Insect biodiversity: science and society. Blackwell Publishing, Oxford, pp 417-431
2. Ratnasingham S, Hebert PDN (2007) BOLD: The barcode of life data system (www.barcod inglife.org). Mol Ecol Notes 7:355-364
3. Janzen DH, Hajibabaei M, Burns JM et al (2005) Wedding biodiversity inventory of a large and complex Lepidoptera fauna with DNA barcoding. Phil Trans R Soc Lond B 360:1835-1845
4. Janzen DH, Hallwachs W, Blandin P, Burns JM, Cadiou J-M, Chacon I et al (2009) Integration of DNA barcoding into an ongoing inventory of complex tropical biodiversity. Mol Ecol Res 9:1-25
5. Xhou X, Robinson JL, Geraci CJ, Parker CR et al (2011) Accelerated construction of a regional DNA-barcode reference library: caddisfl ies (Trichoptera) in the Great Smoky Mountains National Park. J Nor Amer Benth Soc 30:131-162
6. iBOL (2010) Barcoding blitz targets Australian Lepidoptera. Barcode Bulletin 1(4):5
7. Vaglia T, Haxaire J, Kitching IJ et al (2008) Morphology and DNA barcoding reveal three cryptic species within the Xylophanes neoptolemus and loelia species-group (Lepidoptera: Sphingidae). Zootaxa 1923:18-36
8. Hausmann A, Hebert PDN, Mitchell A et al (2009) Revision of the Australian Oenochroma vinaria Guenée, 1858 species-complex ( Lepidoptera , Geometridae, Oenochrominae ): DNA barcoding reveals cryptic diversity and assesses status of type specimen without dissection. Zootaxa 2239:1-21
9. Wilson JJ, Landry JF, Janzen DH et al (2010) Identity of the ailanthus webworm moth, acomplex of two species: evidence from DNA barcoding, morphology and ecology. Zookeys 46: 41-60
10. Dinca V, Zakharov EV, Hebert PDN, Vila R (2011) Complete DNA barcode reference library for a country's butterfl y fauna reveals high performance for temperate Europe. Proc R Soc Lond B 278:347-355
11. Virgilio M, Backeljau T, Nevado B, de Meyer M (2010) Comparative performances of DNA barcoding across insect orders. BMC Bioinformatics 11:4567-4573
12. Vogler AP (2006) Will DNA barcoding advance efforts to conserve biodiversity more effi ciently than traditional taxonomic methods? Front Ecol Environ 4:270-272
13. Pons J, Barraclough TG, Gomez-Zurita J et al (2006) Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Sys Biol 55:595-609
14. Winter WD Jr (2000) Basic techniques for observing and studying moths & butterfl ies (Memoir No 5). The Lepidopterist's Society, Cambridge
15. Hanner R. (2005) Proposed standards for BARCODE records in INSDC (BRIs). http://barcoding.si.edu/PDF/DWG-data-standards-Final.pdf
16. Regier JC (2008) Protocols, concepts, and reagents for preparing DNA sequencing templates. Version 12/4/08. http://www.umbi. umd.edu/users/jcrlab/ PCR-primers.pdf
17. Porco D, Rougerie R, Deharveng L, Hebert PDN (2010) Coupling non-destructive DNA extraction and voucher retrieval for small softbodied Arthropods in a high-throughput context: the example of Collembola. Mol Ecol Res 10: 942-945
18. Knölke S, Erlacher S, Hausmann A et al (2005) A procedure for combined genitalia extraction and DNA extraction in Lepidoptera. Insect Syst Evol 35:401-409
19. Ivanova NV, deWaard J, Hebert PDN (2006) An inexpensive, automation-friendly protocol for recovering high-quality DNA. Mol Ecol Notes 6:998-1002
20. Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplifi cation of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotech 3: 294-299
21. Wilson JJ (2010) Assessing the value of DNA barcodes and other priority gene regions for molecular phylogenetics of Lepidoptera. PLoS ONE 5:e10525
22. Ivanova N, and Grainger C (2006) Protocols: Sequencing. Canadian Centre for DNA Barcoding CCDB Protocols. http://www.dnabarcoding. c.a.
23. Shokralla S, Singer GAC, Hajibabaei M (2010) Direct PCR amplifi cation and sequencing of specimens' DNA from preservative ethanol. BioTechniques 48:232-234
24. Hebert PDN, Penton EH, Burns J, Janzen DH, Hallwachs W (2004) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfl y, Astraptes fulgerator Proc Nat Acad Sci USA 101: 14812-14817
25. Hajibabaei M, Janzen DH, Burns JM, Hallwachs W, Hebert PDN (2006) DNA barcodes distinguish species of tropical Lepidoptera. Proc Nat Acad Sci USA 103:968-971
26. Messing J (1983) New M13 vectors for cloning. Meth Enzymol 101:20-78