Molecular evolutionary genetic analysis of emerging parvoviruses identified in pigs

Infection, Genetics and Evolution

Volumn 16, Issue , 2013, Pages 369-376

  Xiao, Chao Ting ^a   Halbur, Patrick G ^a   Opriessnig, Tanja ^a  

^a IOWA STATE UNIVERSITY   (United States)

Author keywords

Nomenclature; Parvovirus; Phylogenetic analysis; Pigs; Porcine bocavirus

Indexed keywords

NONSTRUCTURAL PROTEIN 1; PROTEIN VP1;

ADENO ASSOCIATED VIRUS; ALEUTIAN MINK DISEASE VIRUS; ARTICLE; BOCAVIRUS; CLADISTICS; GENE SEQUENCE; GENETIC ANALYSIS; GENOME ANALYSIS; HUMAN PARVOVIRUS B19; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NONHUMAN; NONSTRUCTURAL PROTEIN 1 GENE; NUCLEAR PHOSPHOPROTEIN GENE; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PARVOVIRUS; PORCINE BOCAVIRUS GROUP 1; PORCINE BOCAVIRUS GROUP 2; PORCINE BOCAVIRUS GROUP 3; PORCINE PARVOVIRUS; PORCINE PARVOVIRUS TYPE 1; PORCINE PARVOVIRUS TYPE 2; PORCINE PARVOVIRUS TYPE 3; PORCINE PARVOVIRUS TYPE 4; PORCINE PARVOVIRUS TYPE 5; PRIORITY JOURNAL; SWINE; UNINDEXED SEQUENCE; VIRUS GENE; VIRUS IDENTIFICATION; VP1 GENE;

ANIMALS; BOCAVIRUS; EVOLUTION, MOLECULAR; GENOME, VIRAL; PARVOVIRIDAE INFECTIONS; PARVOVIRUS; PHYLOGENY; SWINE; SWINE DISEASES;

AMDOVIRUS; ARTHROPODA; BOCAVIRUS; ERYTHROVIRUS; MIRIDAE; PARVOVIRINAE; PARVOVIRUS; SUIDAE; SUS; VERTEBRATA;

EID: 84876388807     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2013.03.017     Document Type: Article

References (66)

1. Adlhoch C., Kaiser M., Ellerbrok H., Pauli G. High prevalence of porcine Hokovirus in German wild boar populations. Virol. J. 2010, 7:171.
2. Allander T., Emerson S.U., Engle R.E., Purcell R.H., Bukh J. A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species. Proc. Natl. Acad. Sci. USA 2001, 98:11609-11614.
3. Anderson L.J. Human parvoviruses. J. Infect. Dis. 1990, 161:603-608.
4. Benjamin L.A., Lewthwaite P., Vasanthapuram R., Zhao G., Sharp C., Simmonds P., Wang D., Solomon T. Human parvovirus 4 as potential cause of encephalitis in children. India Emerg. Infect. Dis. 2011, 17:1484-1487.
5. Blomström A.L., Belák S., Fossum C., McKillen J., Allan G., Wallgren P., Berg M. Detection of a novel porcine boca-like virus in the background of porcine circovirus type 2 induced postweaning multisystemic wasting syndrome. Virus Res. 2009, 146:125-129.
6. Blomström A.L., Belák S., Fossum C., Fuxler L., Wallgren P., Berg M. Studies of porcine circovirus type 2, porcine boca-like virus and torque teno virus indicate the presence of multiple viral infections in postweaning multisystemic wasting syndrome pigs. Virus Res. 2010, 152:59-64.
7. Blomström A.L., Stahl K., Okurut A.R., Masembe C., Berg M. Genetic characterisation of a porcine bocavirus detected in domestic pigs in Uganda. Virus Genes 2012, 10.1007/s11262-012-0855-1.
8. Cadar D., Cságola A., Lorincz M., Tombácz K., Kiss T., Spînu M., Tuboly T. Genetic detection and analysis of porcine bocavirus type 1 (PoBoV1) in European wild boar (Sus scrofa). Virus Genes 2011, 43:376-379.
9. Cadar D., Cságola A., Lorincz M., Tombácz K., Spînu M., Tuboly T. Distribution and genetic diversity of porcine hokovirus in wild boars. Arch. Virol. 2011, 156:2233-2239.
10. Cadar D., Cságola A., Kiss T., Tuboly T. Capsid protein evolution and comparative phylogeny of novel porcine parvoviruses. Mol. Phylogenet. Evol. 2013, 66:243-253.
11. Canuti M., Eis-Huebinger A.M., Deijs M., de Vries M., Drexler J.F., Oppong S.K., Müller M.A., Klose S.M., Wellinghausen N., Cottontail V.M., Kalko E.K., Drosten C., van der Hoek L. Two novel parvoviruses in frugivorous New and Old World bats. PLoS One 2011, 6:e29140.
12. Cheng W.X., Li J.S., Huang C.P., Yao D.P., Liu N., Cui S.X., Jin Y., Duan Z.J. Identification and nearly full-length genome characterization of novel porcine bocaviruses. PLoS One 2010, 5:e13583.
13. Cheung A.K., Wu G., Wang D., Bayles D.O., Lager K.M., Vincent A.L. Identification and molecular cloning of a novel porcine parvovirus. Arch. Virol. 2010, 155:801-806.
14. Choi C.S., Molitor T.W., Joo H.S., Gunther R. Pathogenicity of a skin isolate of porcine parvovirus in swine fetuses. Vet. Microbiol. 1987, 15:19-29.
15. Cságola A., Lõrincz M., Cadar D., Tombácz K., Biksi I., Tuboly T. Detection, prevalence and analysis of emerging porcine parvovirus infections. Arch. Virol. 2012, 157:1003-1010.
16. Cui J., Wang X., Ren Y., Cui S., Li G., Ren X. Genome sequence of Chinese porcine parvovirus strain PPV2010. J. Virol. 2012, 86:2379.
17. Cutlip R.C., Mengeling W.L. Pathogenesis of in utero infection: experimental infection of eight- and ten-week-old porcine fetuses with porcine parvovirus. Am. J. Vet. Res. 1975, 36:1751-1754.
18. Dai X.F., Wang Q.J., Jiang S.J., Xie Z.J. Complete genome sequence of a novel porcine parvovirus in China. J. Virol. 2012, 86:13867.
19. Dea S., Elazhary M.A.S.Y., Martineau G.P., Vaillancourt J. Parvovirus-like particles associated with diarrhea in unweaned piglets. Can. J. Comp. Med. 1985, 49:343-345.
20. Drummond A.J., Suchard M.A., Xie D., Rambaut A. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol. Biol. Evol. 2012, 29:1969-1973.
21. Duhamel G.E., Bargar T.W., Schmitt B.J., Molitor T.W., Lu W. Identification of parvovirus-like virus particles in intestinal crypt epithelial cells of pigs with diarrhea. J. Vet. Diagn. Invest. 1991, 3:96-98.
22. Dunne H.W., Gobble J.C., Hokanson J.R., Kradel D.C., Bubash G.R. Porcine reproductive failure associated with a newly defined "SMEDI" group of picornaviruses. Am. J. Vet. Res. 1965, 26:1284-1290.
23. Fryer J.F., Delwart E., Bernardin F., Tuke P.W., Lukashov V.V., Baylis S.A. Analysis of two human parvovirus PARV4 genotypes identified in human plasma for fractionation. J. Gen. Virol. 2007, 88:2162-2167.
24. Goddard A., Leisewitz A.L. Canine parvovirus. Vet. Clin. North Am. Small Anim. Pract. 2010, 40:1041-1053.
25. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis. Program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 1999, 41:95-98.
26. Hao X., Lu Z., Sun P., Fu Y., Cao Y., Li P., Bai X., Bao H., Xie B., Chen Y., Li D., Liu Z. Phylogenetic analysis of porcine parvoviruses from swine samples in China. Virol. J. 2011, 8:320.
27. Hijikata M., Abe K., Win K.M., Shimizu Y.K., Keicho N., Yoshikura H. Identification of new parvovirus DNA sequence in swine sera from Myanmar. Jpn. J. Infect. Dis. 2001, 54:244-245.
28. Huang L., Zhai S.L., Cheung A.K., Zhang H.B., Long J.X., Yuan S.S. Detection of a novel porcine parvovirus, PPV4, in Chinese swine herds. Virol. J. 2010, 7:333.
29. Jones M.S., Kapoor A., Lukashov V.V., Simmonds P., Hecht F., Delwart E. New DNA viruses identified in patients with acute viral infection syndrome. J. Virol. 2005, 79:8230-8236.
30. Kresse J.I., Taylor W.D., Stewart W.W., Eernisse K.A. Parvovirus infection in pigs with necrotic and vesicle-like lesions. Vet. Microbiol. 1985, 10:525-531.
31. Lager K.M., Mengeling W.L. Porcine parvovirus associated with cutaneous lesions in piglets. J. Vet. Diagn. Invest. 1994, 6:357-359.
32. Lager K.M., Mengeling W.L., Liu W. Comparison of the virulence of two isolates of porcine parvovirus in 72-day-old porcine fetuses. J. Vet. Diagn. Invest. 1992, 4:245-248.
33. Lau S.K., Woo P.C., Tse H., Fu C.T., Au W.K., Chen X.C., Tsoi H.W., Tsang T.H., Chan J.S., Tsang D.N., Li K.S., Tse C.W., Ng T.K., Tsang O.T., Zheng B.J., Tam S., Chan K.H., Zhou B., Yuen K.Y. Identification of novel porcine and bovine parvoviruses closely related to human parvovirus 4. J. Gen. Virol. 2008, 89:1840-1848.
34. Lau S.K., Woo P.C., Yip C.C., Li K.S., Fu C.T., Huang Y., Chan K.H., Yuen K.Y. Co-existence of multiple strains of two novel porcine bocaviruses in the same pig, a previously undescribed phenomenon in members of the family Parvoviridae, and evidence for inter- and intra-host genetic diversity and recombination. J. Gen. Virol. 2011, 92:2047-2059.
35. Li B., Ma J., Xiao S., Fang L., Zeng S., Wen L., Zhang X., Ni Y., Guo R., Yu Z., Zhou J., Mao A., Lv L., Wang X., He K. Complete genome sequence of a novel species of Porcine Bocavirus, PBoV5. J. Virol. 2012, 86:1286-1287.
36. Li B., Ma J., Xiao S., Wen L., Ni Y., Zhang X., Fang L., He K. Genome sequence of a highly prevalent porcine partetravirus in Mainland China. J. Virol. 2012, 86:1899.
37. Longhi E., Bestetti G., Acquaviva V., Foschi A., Piolini R., Meroni L., Magni C., Antinori S., Parravicini C., Corbellino M. Human parvovirus 4 in the bone marrow of Italian patients with AIDS. AIDS 2007, 21:1481-1483.
38. Manning A., Willey S.J., Bell J.E., Simmonds P. Comparison of tissue distribution, persistence, and molecular epidemiology of parvovirus B19 and novel human parvoviruses PARV4 and human bocavirus. J. Infect. Dis. 2007, 195:1345-1352.
39. Manteufel J., Truyen U. Animal bocaviruses: a brief review. Intervirology 2008, 51:328-334.
40. McKillen J., McNeilly F., Duffy C., McMenamy M., McNair I., Hjertner B., Millar A., McKay K., Lagan P., Adair B., Allan G. Isolation in cell cultures and initial characterisation of two novel bocavirus species from swine in Northern Ireland. Vet. Microbiol. 2011, 152:39-45.
41. Mengeling W.L. Prenatal infection following maternal exposure to porcine parvovirus on either the seventh or fourteenth day of gestation. Can. J. Comp. Med. 1979, 43:106-109.
42. Mengeling W.L., Cutlip R.C. Reproductive disease experimentally induced by exposing pregnant gilts to porcine parvovirus. Am. J. Vet. Res. 1976, 37:1393-1400.
43. Mengeling W.L., Lager K.M., Vorwald A.C. The effect of porcine parvovirus and porcine reproductive and respiratory syndrome virus on porcine reproductive performance. Anim. Reprod. Sci. 2000, 60-61:199-210.
44. Opriessnig T., Xiao C.T., Gerber P.F., Halbur P.G. Emergence of a novel mutant PCV2b variant associated with clinical PCVAD in two vaccinated pig farms in the US concurrently infected with PPV2. Vet. Microbiol. 2013, 10.1016/j.vetmic.2012.12.019.
45. Pan Y., Zeng Q., Zhu C., Hua X., Wang M., Pan K., Cui L. Frequency and characterization of porcine hokovirus (PHoV) in domestic pigs in eastern China. Arch. Virol. 2012, 157:1785-1788.
46. Panning M., Kobbe R., Vollbach S., Drexler J.F., Adjei S., Adjei O., Drosten C., May J., Eis-Hubinger A.M. Novel human parvovirus 4 genotype 3 in infants, Ghana. Emerg. Infect. Dis. 2010, 16:1143-1146.
47. Paul P.S., Mengeling W.L. Evaluation of a modified live-virus vaccine for the prevention of porcine parvovirus-induced reproductive disease in swine. Am. J. Vet. Res. 1980, 41:2007-2011.
48. Shan T., Lan D., Li L., Wang C., Cui L., Zhang W., Hua X., Zhu C., Zhao W., Delwart E. Genomic characterization and high prevalence of bocaviruses in swine. PLoS One 2011, 6:e17292.
49. Shan T., Li L., Simmonds P., Wang C., Moeser A., Delwart E. The fecal virome of pigs on a high-density farm. J. Virol. 2011, 85:11697-11708.
50. Shangjin C., Cortey M., Segalés J. Phylogeny and evolution of the NS1 and VP1/VP2 gene sequences from porcine parvovirus. Virus Res. 2009, 140:209-215.
51. Simmonds P., Douglas J., Bestetti G., Longhi E., Antinori S., Parravicini C., Corbellino M. A third genotype of the human parvovirus PARV4 in sub-Saharan Africa. J. Gen. Virol. 2008, 89:2299-2302.
52. Simmons R., Sharp C., McClure C.P., Rohrbach J., Kovari H., Frangou E., Simmonds P., Irving W., Rauch A., Bowness P., Klenerman P. Parvovirus 4 infection and clinical outcome in high-risk populations. J. Infect. Dis. 2012, 205:1816-1820.
53. Szelei J., Liu K., Li Y., Fernandes S., Tijssen P. Parvovirus 4-like virus in blood products. Emerg. Infect. Dis. 2010, 16:561-564.
54. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
55. Tijssen P., Agbandje-McKenna M., Almendral J.M., Bergoin M., Flegel T.W., Hedman K., Kleinschmidt J., Li Y., Pintel D.J., Tattersall P. Family parvoviridae. Virus Taxonomy. 9th report of the International Committee on Taxonomy of Viruses 2011, 405-425. Academic Press, London. A.M.Q. King, M.J. Adams, E.B. Carstens, E.J. Lefkowitz (Eds.).
56. Tse H., Tsoi H.W., Teng J.L., Chen X.C., Liu H., Zhou B., Zheng B.J., Woo P.C., Lau S.K., Yuen K.Y. Discovery and genomic characterization of a novel ovine partetravirus and a new genotype of bovine partetravirus. PLoS One 2011, 6:e25619.
57. Wang F., Wei Y., Zhu C., Huang X., Xu Y., Yu L., Yu X. Novel parvovirus sublineage in the family of Parvoviridae. Virus Genes 2010, 41:305-308.
58. Xiao C.T., Giménez-Lirola L.G., Halbur P.G., Opriessnig T. Increasing porcine PARV4 prevalence with pig age in the U.S. pig population. Vet. Microbiol. 2012, 160:290-296.
59. Xiao C.T., Gerber P.F., Giménez-Lirola L.G., Halbur P.G., Opriessnig T. Characterization of porcine parvovirus type 2 (PPV2) which is highly prevalent in the USA. Vet. Microbiol. 2013, 161:325-330.
60. Xiao C.T., Halbur P.G., Opriessnig T. Complete genome sequence of a novel porcine parvovirus (PPV) provisionally designated PPV5. Genome Announcements 2013, 1:e00021-00012.
61. Xu Y.G., Cui L.C., Wang H.W., Huo G.C., Li S.L. Characterization of the capsid protein VP2 gene of a virulent strain NE/09 of porcine parvovirus isolated in China. Res. Vet. Sci. 2013, 94:219-224.
62. Yang W.Z., Yu J.M., Li J.S., Cheng W.X., Huang C.P., Duan Z.J. Genome characterization of a novel porcine bocavirus. Arch. Virol. 2012, 157:2125-2132.
63. Yu X., Zhang J., Hong L., Wang J., Yuan Z., Zhang X., Ghildyal R. High prevalence of human parvovirus 4 infection in HBV and HCV infected individuals in shanghai. PLoS One 2012, 7:e29474.
64. Zeng S., Wang D., Fang L., Ma J., Song T., Zhang R., Chen H., Xiao S. Complete coding sequences and phylogenetic analysis of porcine bocavirus. J. Gen. Virol. 2011, 92:784-788.
65. Zhai S., Yue C., Wei Z., Long J., Ran D., Lin T., Deng Y., Huang L., Sun L., Zheng H., Gao F., Chen S., Yuan S. High prevalence of a novel porcine bocavirus in weanling piglets with respiratory tract symptoms in China. Arch. Virol. 2010, 155:1313-1317.
66. Zhang H.B., Huang L., Liu Y.J., Lin T., Sun C.Q., Deng Y., Wei Z.Z., Cheung A.K., Long J.X., Yuan S.S. Porcine bocaviruses: genetic analysis and prevalence in Chinese swine population. Epidemiol. Infect. 2011, 139:1581-1586.