On the evolutionary conservation of protein dynamics. Comment on "Comparing proteins by their internal dynamics: Exploring structure-function relationships beyond static structural alignments" by Cristian Micheletti.

Physics of Life Reviews

Volumn 10, Issue 1, 2013, Pages 31-32

  Echave, Julian ^a  

^a UNIVERSIDAD NACIONAL DE SAN MARTÍN   (Argentina)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

ANIMAL; CHEMISTRY; HUMAN; METABOLISM; NOTE; STRUCTURAL HOMOLOGY;

ANIMALS; HUMANS; PROTEINS; STRUCTURAL HOMOLOGY, PROTEIN;

EID: 84876336102     PISSN: 15710645     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plrev.2012.10.006     Document Type: Note

References (10)

1. Zuckerkandle E., Pauling L. Molecules as documents of evolutionary history. J Theor Biol 1965, 8:357-366.
2. Lesk A.M., Chothia C. How different amino-acid sequences determine similar protein structures - structure and evolutionary dynamics of the globins. J Mol Biol 1980, 136:225-270.
3. Orengo C.A., Michie A.D., Jones S., Jones D.T., Swindells M.B., Thornton J.M. CATH - a hierarchic classification of protein domain structures. Structure 1997, 5:1093-1108.
4. Murzin A.G., Brenner S.E., Hubbard T., Chothia C. SCOP - a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 1995, 247:536-540.
5. Maguid S., Fernandez-Alberti S., Ferrelli L., Echave J. Exploring the common dynamics of homologous proteins. Application to the globin family. Biophys J 2005, 89:3-13.
6. Pang A., Arinaminpathy Y., Sansom M.S.P., Biggin P.C. Comparative molecular dynamics - similar folds and similar motions?. Proteins 2005, 61:809-822.
7. Carnevale V., Raugei S., Micheletti C., Carloni P. Convergent dynamics in the protease enzymatic superfamily. J Am Chem Soc 2006, 128:9766-9772.
8. Micheletti C. Comparing proteins by their internal dynamics: exploring structure-function relationships beyond static structural alignments. Phys Life Rev 2013, 10:1-26. [in this issue].
9. Maguid S., Fernandez-Alberti S., Echave J. Evolutionary conservation of protein vibrational dynamics. Gene 2008, 422:7-13.
10. Echave J. Why are the low-energy protein normal modes evolutionarily conserved?. Pure Appl Chem 2012, 84:1931-1937.