Current trends of Mycobacterium tuberculosis molecular epidemiology in Saudi Arabia and associated demographical factors

Infection, Genetics and Evolution

Volumn 16, Issue , 2013, Pages 362-368

  Al Hajoj, Sahal ^a   Varghese, Bright ^a   Al Habobe, Farah ^b   Shoukri, Mohammed M ^a   Mulder, Arnout ^c   Van Soolingen, Dick ^c,d  

^a KING FAISAL SPECIALIST HOSPITAL AND RESEARCH CENTER   (Saudi Arabia)

^b UTRECHT UNIVERSITY   (Netherlands)

^c NATIONAL INSTITUTE FOR PUBLIC HEALTH AND THE ENVIRONMENT   (Netherlands)

^d RADBOUD UNIVERSITY MEDICAL CENTER   (Netherlands)

Author keywords

Genotyping; Phylogenetic diversity; Population dynamics; Saudi Arabia; Tuberculosis

Indexed keywords

ADOLESCENT; ADULT; AGE DISTRIBUTION; ARTICLE; BACTERIAL STRAIN; BACTERIAL TRANSMISSION; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CLUSTER ANALYSIS; EXTRAPULMONARY TUBERCULOSIS; FEMALE; GENETIC VARIABILITY; HUMAN; LUNG TUBERCULOSIS; MAJOR CLINICAL STUDY; MALE; MOLECULAR EPIDEMIOLOGY; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; PHYLOGENY; PHYLOGEOGRAPHY; POPULATION STRUCTURE; PRIORITY JOURNAL; SAUDI ARABIA; SEX RATIO; SPOLIGOTYPING; TUBERCULOSIS; VARIABLE NUMBER OF TANDEM REPEAT;

ADOLESCENT; ADULT; CLUSTER ANALYSIS; COHORT STUDIES; DNA, BACTERIAL; GENOTYPE; GENOTYPING TECHNIQUES; HUMANS; MALE; MOLECULAR EPIDEMIOLOGY; MYCOBACTERIUM TUBERCULOSIS; PHYLOGENY; SAUDI ARABIA; TUBERCULOSIS;

MYCOBACTERIUM TUBERCULOSIS;

EID: 84876335858     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2013.03.019     Document Type: Article

References (47)

1. Abouzeid M.S., Zumla A.I., Felemban S., Alotaibi B., O'Grady J., Memish Z.A. Tuberculosis trends in saudis and non-saudis in the kingdom of Saudi Arabia - a 10year retrospective study (2000-2009). PLoS One 2012, 7:e39478.
2. Al-Hajoj S.A., Zozio T., Al-Rabiah F., Mohammad V., Al-Nasser M., Sola C., Rastogi N. First insight into the population structure of Mycobacterium tuberculosis in Saudi Arabia. J. Clin. Microbiol. 2007, 45:2467-2473.
3. Al-Jasser F.S., Kabbash I.A., Almazroa M.A., Memish Z.A. Patterns of diseases and preventive measures among domestic hajjis from central, Saudi Arabia. Saudi Med. J. 2012, 33:879-886.
4. Allix-Beguec C., Fauville-Dufaux M., Supply P. Three-year population-based evaluation of standardized mycobacterial interspersed repetitive-unit-variable-number tandem-repeat typing of Mycobacterium tuberculosis. J. Clin. Microbiol. 2008, 46:1398-1406.
5. Alrabiaah A.A., Alsubaie S.S., Bukhari E.I., Gad A., Alzamel F.A. Outbreak of bacille calmette-guerin-related lymphadenitis in Saudi children at a university hospital after a change in the strain of vaccine. Ann. Saudi Med. 2012, 32:4-8.
6. Alzahrani A.G., Choudhry A.J., Al Mazroa M.A., Turkistani A.H., Nouman G.S., Memish Z.A. Pattern of diseases among visitors to Mina health centers during the Hajj season, 1429 H (2008 G). J. Infect. Public Health 2012, 5:22-34.
7. Alzeer A.H. Respiratory tract infection during Hajj. Ann. Thorac. Med. 2009, 4:50-53.
8. Aminian M., Shabbeer A., Bennett K.P. A conformal Bayesian network for classification of Mycobacterium tuberculosis complex lineages. BMC Bioinformatics 2010, 11(Suppl. 3):S4.
9. Arora J., Singh U.B., Suresh N., Rana T., Porwal C., Kaushik A., Pande J.N. Characterization of predominant Mycobacterium tuberculosis strains from different subpopulations of India. Infect. Genet. Evol. 2009, 9:832-839.
10. Banu S., Gordon S.V., Palmer S., Islam M.R., Ahmed S., Alam K.M., Cole S.T., Brosche R. Genotypic analysis of Mycobacterium tuberculosis in Bangladesh and prevalence of the Beijing strain. J. Clin. Microbiol. 2004, 42:674-682.
11. Brudey K., Driscoll J., Rigouts L., Prodinger W., Gori A., Al-Hajoj S., Allix C., Aristimuno L., Arora J., Baumanis V., Binder L., Cafrune P., Cataldi A., Cheong S., Diel R., Ellermeier C., Evans J., Fauville-Dufaux M., Ferdinand S., de Viedma D., Garzelli C., Gazzola L., Gomes H., Guttierez M.C., Hawkey P., van Helden P., Kadival G., Kreiswirth B., Kremer K., Kubin M., Kulkarni S., Liens B., Lillebaek T., Ly H., Martin C., Mokrousov I., Narvskaia O., Ngeow Y., Naumann L., Niemann S., Parwati I., Rahim Z., Rasolofo-Razanamparany V., Rasolonavalona T., Rossetti M.L., Rusch-Gerdes S., Sajduda A., Samper S., Shemyakin I., Singh U., Somoskovi A., Skuce R., van Soolingen D., Streicher E., Suffys P., Tortoli E., Tracevska T., Vincent V., Victor T., Warren R., Yap S., Zaman K., Portaels F., Rastogi N., Sola C. Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiol. 2006, 6:23.
12. Click E.S., Moonan P.K., Winston C.A., Cowan L.S., Oeltmann J.E. Relationship between Mycobacterium tuberculosis phylogenetic lineage and clinical site of tuberculosis. Clin. Infect. Dis. 2012, 54:211-219.
13. Curtin P.D. Cross cultural trade in world history 1984, Cambridge University Press, Cambridge.
14. Dale J.W., Bothamley G.H., Drobniewski F., Gillespie S.H., McHugh T.D., Pitman R. Origins and properties of Mycobacterium tuberculosis isolates in London. J. Med. Microbiol. 2005, 54:575-582.
15. Demay C., Liens B., Burguiere T., Hill V., Couvin D., Millet J., Mokrousov I., Sola C., Zozio T., Rastogi N. SITVITWEB-a publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology. Infect. Genet. Evol. 2012, 12:755-766.
16. Dolzani L., Rosato M., Sartori B., Banfi E., Lagatolla C., Predominato M., Fabris C., Tonin E., Gombac F., Monti-Bragadin C. Mycobacterium tuberculosis isolates belonging to katG gyrA group 2 are associated with clustered cases of tuberculosis in Italian patients. J. Med. Microbiol. 2004, 53:155-159.
17. Fok A., Numata Y., Schulzer M., Fitz-Gerald M.J. Risk factors for clustering of tuberculosis cases: a systematic review of population-based molecular epidemiology studies. Int. J. Tuberc. Lung. Dis. 2008, 12:480-492.
18. Gagneux S., DeRiemer K., Van T., Kato-Maeda M., de Jong B.C., Narayanan S., Nicol M., Niemann S., Kremer K., Guiterezz M.C., Hilty M., Hopewell P.C., Small P.M. Variable host-pathogen compatibility in Mycobacterium tuberculosis. Proc. Natl. Acad. Sci. USA 2006, 103:2869-2873.
19. Gleason J.A., McNabb S.J., Abduljadayel N., Abouzeid M.S., Memish Z.A. Tuberculosis trends in the Kingdom of Saudi Arabia, 2005 to 2009. Ann. Epidemiol. 2012, 22:264-269.
20. Hermans P.W., Messadi F., Guebrexabher H., van Soolingen D., de Haas P.E., Heersma H., de Neeling H., Ayoub A., Portaels F., Frommel D. Analysis of the population structure of Mycobacterium tuberculosis in Ethiopia, Tunisia, and The Netherlands: usefulness of DNA typing for global tuberculosis epidemiology. J. Infect. Dis. 1995, 171:1504-1513.
21. Hirsh A.E., Tsolaki A.G., DeRiemer K., Feldman M.W., Small P.M. Stable association between strains of Mycobacterium tuberculosis and their human host populations. Proc. Natl. Acad. Sci. USA 2004, 101:4871-4876.
22. Kamerbeek J., Schouls L., Kolk A., van Agterveld M., van Soolingen D., Kuijper S., Bunschoten A., Molhuizen H., Shaw R., Goyal M., van Embden J. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J. Clin. Microbiol. 1997, 35:907-914.
23. Kong Y., Cave M.D., Zhang L., Foxman B., Marrs C.F., Bates J.H., Yang Z.H. Association between Mycobacterium tuberculosis Beijing/W lineage strain infection and extrathoracic tuberculosis: Insights from epidemiologic and clinical characterization of the three principal genetic groups of M. tuberculosis clinical isolates. J. Clin. Microbiol. 2007, 45:409-414.
24. Nava-Aguilera E., Lopez-Vidal Y., Harris E., Morales-Perez A., Mitchell S., Flores-Moreno M., Villegas-Arrizon A., Legorreta-Sobberanis J., Ledogar R., Anderrson N. Clustering of Mycobacterium tuberculosis cases in Acapulco: Spoligotyping and risk factors. Clin. Dev. Immunol. 2011, 408375.
25. Neyrolles O., Quintana-Murci L. Sexual inequality in tuberculosis. PLoS Med. 2009, 6:e1000199.
26. Nicol M.P., Sola C., February B., Rastogi N., Steyn L., Wilkinson R.J. Distribution of strain families of Mycobacterium tuberculosis causing pulmonary and extrapulmonary disease in hospitalized children in Cape Town. South Afr. J. Clin. Microbiol. 2005, 43:5779-5781.
27. Parwati I., Alisjahbana B., Apriani L., Soetikno R.D., Ottenhoff T.H., van der Zanden A.G., van der Meer J., van Soolingen D., van Crevel R. Mycobacterium tuberculosis Beijing genotype is an independent risk factor for tuberculosis treatment failure in Indonesia. J. Infect. Dis. 2010, 201:553-557.
28. Rajapaksa U.S., Victor T.C., Perera A.J., Warren R.M., Senevirathne S.M. Molecular diversity of Mycobacterium tuberculosis isolates from patients with pulmonary tuberculosis in Sri Lanka. Trans. R. Soc. Trop. Med. Hyg. 2008, 102:997-1002.
29. Ramazanzadeh R., Farnia P., Amirmozafari N., Ghazi F., Ghadertotonchi Z., Kamran J., Mohammadi F., Mirsaedi M., Masjedi M. Comparison between molecular epidemiology, geographical regions and drug resistance in Mycobacterium tuberculosis strains isolated from Iranian and Afghan patients. Chemotherapy 2006, 52:316-320.
30. Reed M.B., Pichler V.K., McIntosh F., Mattia A., Fallow A., Masala S., Domenech P., Zwerling A., Thibert L., Menzies D., Schwartzman K., Behr M.A. Major Mycobacterium tuberculosis lineages associate with patient country of origin. J. Clin. Microbiol. 2009, 47:1119-1128.
31. Rhee J.T., Piatek A.S., Small P.M., Harris L.M., Chaparro S.V., Kramer F.R., Alland D. Molecular epidemiologic evaluation of transmissibility and virulence of Mycobacterium tuberculosis. J. Clin. Microbiol. 1999, 37:1764-1770.
32. Rothschild B.M., Martin L.D., Lev G., Bercovier H., Bar-Gal G.K., Greenblatt C., Donoghue H., Spigelman M., Brittain D. Mycobacterium tuberculosis complex DNA from an extinct bison dated 17,000 years before the present. Clin. Infect. Dis. 2001, 33:305-311.
33. Shabbeer A., Ozcaglar C., Yener B., Bennett K.P. Web tools for molecular epidemiology of tuberculosis. Infect. Genet. Evol. 2012, 12:767-781.
34. Singh M., Balamurugan A., Katoch K., Sharma S.K., Mehra N.K. Immunogenetics of mycobacterial infections in the North Indian population. Tissue Antigens 2007, 69(Suppl. 1):228-230.
35. Sreevatsan S., Pan X., Stockbauer K.E., Connell N.D., Kreiswirth B.N., Whittam T.S., Musser J.M. Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. Proc. Natl. Acad. Sci. USA 1997, 94:9869-9874.
36. Supply P., Allix C., Lesjean S., Cardoso-Oelemann M., Rusch-Gerdes S., Willery E., Savine E., de Haas P., van Deutekom H., Roring S., Bifani P., Kurepina N., Kreiswirth B., Sola C., Rastogi N., Vatin V., Gutierrez M.C., Fauville M., Niemann S., Skuce R., Kremer K., Locht C., van Soolingen D. Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis. J. Clin. Microbiol. 2006, 44:4498-4510.
37. Svensson E., Millet J., Lindqvist A., Olsson M., Ridell M., Rastogi N. Impact of immigration on tuberculosis epidemiology in a low-incidence country. Clin. Microbiol. Infect. 2011, 17:881-887.
38. Talarico S., Ijaz K., Zhang X., Mukasa L.N., Zhang L., Marrs C.F., Cave M.D., Bates J.H., Yang Z. Identification of factors for tuberculosis transmission via an integrated multidisciplinary approach. Tuberculosis (Edinburgh) 2011, 91:244-249.
39. Tanveer M., Hasan Z., Siddiqui A.R., Ali A., Kanji A., Ghebremicheal S., Hassan R. Genotyping and drug resistance patterns of Mycobacterium tuberculosis strains in Pakistan. BMC Infect. Dis. 2008, 8:171.
40. Thwaites G., Caws M., Chau T.T., D'Sa A., Lan N.T., Huyen M.N., Gagneux S., Anh P.T., Tho D.Q., Torok E., Nhu N.T., Duyen N.T., Duy P.M., Richenberg J., Simmons C., Hien T.T., Farrar J. Relationship between Mycobacterium tuberculosis genotype and the clinical phenotype of pulmonary and meningeal tuberculosis. J. Clin. Microbiol. 2008, 46:1363-1368.
41. van Helden P.D. Molecular epidemiology of TB: challenging dogmas and asking new questions. IUBMB Life 2002, 53:219-223.
42. Varghese B., Hillemann A., Wijayanti D.R., Shoukri M., Al-Rabiah F., Al-Omari R., Al-Hajoj S. New insight into the molecular characterization of isoniazid and rifampicin resistant Mycobacterium tuberculosis strains from Saudi Arabia. Infect. Genet. Evol. 2012, 12:549-556.
43. Varghese B., Supply P., Allix-Beguec C., Shoukri M., Al-Omari R., Herbawi M., Al-Hajoj S. Admixed phylogenetic distribution of drug resistant Mycobacterium tuberculosis in Saudi Arabia. PLoS One 2013, 8:e55598.
44. Weniger T., Krawczyk J., Supply P., Niemann S., Harmsen D. MIRU-VNTRplus: a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria. Nucleic Acids Res. 2010, 38:W326-W331.
45. Wilder-Smith A., Foo W., Earnest A., Paton N.I. High risk of Mycobacterium tuberculosis infection during the Hajj pilgrimage. Trop. Med. Int. Health. 2005, 10:336-339.
46. World Health Organization Global Tuberculosis Control Report- 2012 2012, WHO, Geneva, Switzerland.
47. Yang C., Luo T., Sun G., Qiao K., Deriemer K., Mei J., Gao Q. Mycobacterium tuberculosis Beijing strains favor transmission but not drug resistance in China. Clin. Infect. Dis. 2012, 55:1179-1187.