-
1
-
-
65449162673
-
Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing
-
Abdelkrim J, Robertson BC, Stanton J-AL, Gemmell NJ, (2009) Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing. Biotechniques 46: 185-192.
-
(2009)
Biotechniques
, vol.46
, pp. 185-192
-
-
Abdelkrim, J.1
Robertson, B.C.2
Stanton, J.-A.L.3
Gemmell, N.J.4
-
2
-
-
78649841402
-
Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics
-
Timmermans MJTN, Dodsworth S, Culverwell CL, Bocak L, Ahrens D, et al. (2010) Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics. Nucleic Acids Research 38: e197.
-
(2010)
Nucleic Acids Research
, vol.38
-
-
Timmermans, M.J.T.N.1
Dodsworth, S.2
Culverwell, C.L.3
Bocak, L.4
Ahrens, D.5
-
3
-
-
84856619292
-
A massively parallel sequencing approach uncovers ancient origins and high genetic variability of endangered Przewalski's horses
-
Goto H, Ryder OA, Fisher AR, Schultz B, KosakovskyPond SL, et al. (2011) A massively parallel sequencing approach uncovers ancient origins and high genetic variability of endangered Przewalski's horses. Genome Biology and Evolution 3: 1096-1106.
-
(2011)
Genome Biology and Evolution
, vol.3
, pp. 1096-1106
-
-
Goto, H.1
Ryder, O.A.2
Fisher, A.R.3
Schultz, B.4
KosakovskyPond, S.L.5
-
4
-
-
79954599493
-
Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore
-
article 10
-
Knaus BJ, Cronn R, Liston A, Pilgrim K, Schwartz MK (2011) Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore. BMC Ecology 11: article 10.
-
(2011)
BMC Ecology
, vol.11
-
-
Knaus, B.J.1
Cronn, R.2
Liston, A.3
Pilgrim, K.4
Schwartz, M.K.5
-
5
-
-
79957800445
-
Characterization of the transcriptome of a wild great tit Parus major population by next generation sequencing
-
article 283
-
Santure AW, Gratten J, Mossman JA, Sheldon BC, Slate J (2011) Characterization of the transcriptome of a wild great tit Parus major population by next generation sequencing. BMC Genomics 12: article 283.
-
(2011)
BMC Genomics
, vol.12
-
-
Santure, A.W.1
Gratten, J.2
Mossman, J.A.3
Sheldon, B.C.4
Slate, J.5
-
6
-
-
84856420280
-
De novo transcriptome assembly and polymorphism detection in the flowering plant Silene vulgaris (Caryophyllaceae)
-
Sloan DB, Keller SR, Berardi AE, Sanderson BJ, Karpovich JF, et al. (2012) De novo transcriptome assembly and polymorphism detection in the flowering plant Silene vulgaris (Caryophyllaceae). Molecular Ecology Resources 12: 333-343.
-
(2012)
Molecular Ecology Resources
, vol.12
, pp. 333-343
-
-
Sloan, D.B.1
Keller, S.R.2
Berardi, A.E.3
Sanderson, B.J.4
Karpovich, J.F.5
-
7
-
-
77951973196
-
A 454 multiplex sequencing method for rapid and reliable genotyping of highly polymorphic genes in large-scale studies
-
Galan M, Guivier E, Caraux G, Charbonnel N, Cosson J-F, (2010) A 454 multiplex sequencing method for rapid and reliable genotyping of highly polymorphic genes in large-scale studies. BMC Genomics 11: 296.
-
(2010)
BMC Genomics
, vol.11
, pp. 296
-
-
Galan, M.1
Guivier, E.2
Caraux, G.3
Charbonnel, N.4
Cosson, J.-F.5
-
8
-
-
34547834963
-
The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing
-
Binladen J, Gilbert MTP, Bollback JP, Panitz F, Bendixen C, et al. (2007) The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing. PLoS ONE 2: e197.
-
(2007)
PLoS ONE
, vol.2
-
-
Binladen, J.1
Gilbert, M.T.P.2
Bollback, J.P.3
Panitz, F.4
Bendixen, C.5
-
9
-
-
39449089394
-
Parallel tagged sequencing on the 454 platform
-
Meyer M, Stenzel U, Hofreiter M, (2008) Parallel tagged sequencing on the 454 platform. Nature Protocols 3: 267-278.
-
(2008)
Nature Protocols
, vol.3
, pp. 267-278
-
-
Meyer, M.1
Stenzel, U.2
Hofreiter, M.3
-
10
-
-
82955249064
-
Gene conversion rapidly generates major histocompatibility complex diversity in recently founded bird populations
-
Spurgin LG, van Oosterhout C, Illera JC, Bridgett S, Gharbi K, et al. (2011) Gene conversion rapidly generates major histocompatibility complex diversity in recently founded bird populations. Molecular Ecology 20: 5213-5225.
-
(2011)
Molecular Ecology
, vol.20
, pp. 5213-5225
-
-
Spurgin, L.G.1
van Oosterhout, C.2
Illera, J.C.3
Bridgett, S.4
Gharbi, K.5
-
11
-
-
84861480746
-
Differentiated population structure of a genetically depauperate mangrove species Ceriops tagal revealed by both Sanger and deep sequencing
-
Huang Y, Zhu C, Li X, Li X, Hu L, et al. (2012) Differentiated population structure of a genetically depauperate mangrove species Ceriops tagal revealed by both Sanger and deep sequencing. Aquatic Botany 101: 46-54.
-
(2012)
Aquatic Botany
, vol.101
, pp. 46-54
-
-
Huang, Y.1
Zhu, C.2
Li, X.3
Li, X.4
Hu, L.5
-
12
-
-
78751665708
-
The next generation of molecular markers from massively parallel sequencing of pooled DNA samples
-
Futschik A, Schlötterer C, (2010) The next generation of molecular markers from massively parallel sequencing of pooled DNA samples. Genetics 186: 207-218.
-
(2010)
Genetics
, vol.186
, pp. 207-218
-
-
Futschik, A.1
Schlötterer, C.2
-
13
-
-
77951702343
-
Genetic heterogeneity in human disease
-
McClellan J, King M-C, (2010) Genetic heterogeneity in human disease. Cell 141: 210-217.
-
(2010)
Cell
, vol.141
, pp. 210-217
-
-
McClellan, J.1
King, M.-C.2
-
14
-
-
54249110308
-
Evaluation of human gene variant detection in amplicon pools by the GC-FLX parallel pyrosequencer
-
article 464
-
Bordoni R, Bonnal R, Rizzi E, Carrera P, Benedetti S, et al. (2008) Evaluation of human gene variant detection in amplicon pools by the GC-FLX parallel pyrosequencer. BMC Genomics 9: article 464.
-
(2008)
BMC Genomics
, vol.9
-
-
Bordoni, R.1
Bonnal, R.2
Rizzi, E.3
Carrera, P.4
Benedetti, S.5
-
15
-
-
63949086651
-
Quantification of rare allelic variants from pooled genomic DNA
-
Druley TE, Vallania FLM, Wegner DJ, Varley KE, Knowles OL, et al. (2009) Quantification of rare allelic variants from pooled genomic DNA. Nature Methods 6: 263-265.
-
(2009)
Nature Methods
, vol.6
, pp. 263-265
-
-
Druley, T.E.1
Vallania, F.L.M.2
Wegner, D.J.3
Varley, K.E.4
Knowles, O.L.5
-
16
-
-
71749099456
-
Deep sequencing to reveal new variants in pooled DNA samples
-
Out AA, van Minderhout IJHM, Goeman JJ, Ariyurek Y, Ossowski S, et al. (2009) Deep sequencing to reveal new variants in pooled DNA samples. Human Mutation 30: 1703-1712.
-
(2009)
Human Mutation
, vol.30
, pp. 1703-1712
-
-
Out, A.A.1
van Minderhout, I.J.H.M.2
Goeman, J.J.3
Ariyurek, Y.4
Ossowski, S.5
-
17
-
-
84867007629
-
Estimating allele frequency from next-generation sequencing of pooled mitochondrial DNA samples
-
article 51
-
Wang T, Pradhan K, Ye K, Wong LJ, Rohan TE (2011) Estimating allele frequency from next-generation sequencing of pooled mitochondrial DNA samples. Frontiers in Genetics 2: article 51.
-
(2011)
Frontiers in Genetics
, vol.2
-
-
Wang, T.1
Pradhan, K.2
Ye, K.3
Wong, L.J.4
Rohan, T.E.5
-
18
-
-
79960220058
-
Amplicon-based high-throughput pooled sequencing identifies mutations in CYP7B1 and SPG7 in sporadic spastic paraplegia patients
-
Schlipf NA, Schüle R, Klimpe S, Karle KN, Synofzik M, et al. (2011) Amplicon-based high-throughput pooled sequencing identifies mutations in CYP7B1 and SPG7 in sporadic spastic paraplegia patients. Clinical Genetics 80: 148-160.
-
(2011)
Clinical Genetics
, vol.80
, pp. 148-160
-
-
Schlipf, N.A.1
Schüle, R.2
Klimpe, S.3
Karle, K.N.4
Synofzik, M.5
-
19
-
-
80955151523
-
Discovery of polymorphisms in starch-related genes in rice germplasm by amplification of pooled DNA and deeply parallel sequencing
-
Kharabian-Masouleh A, Waters DLE, Reinke RF, Henry RJ, (2011) Discovery of polymorphisms in starch-related genes in rice germplasm by amplification of pooled DNA and deeply parallel sequencing. Plant Biotechnology Journal 9: 1074-1085.
-
(2011)
Plant Biotechnology Journal
, vol.9
, pp. 1074-1085
-
-
Kharabian-Masouleh, A.1
Waters, D.L.E.2
Reinke, R.F.3
Henry, R.J.4
-
20
-
-
80051668334
-
Large-scale detection of rare variants via pooled multiplexed next-generation sequencing: towards next-generation Ecotilling
-
Marroni F, Pinosio S, Di Centa E, Jurman I, Boerjan W, et al. (2011) Large-scale detection of rare variants via pooled multiplexed next-generation sequencing: towards next-generation Ecotilling. The Plant Journal 67: 736-745.
-
(2011)
The Plant Journal
, vol.67
, pp. 736-745
-
-
Marroni, F.1
Pinosio, S.2
Di Centa, E.3
Jurman, I.4
Boerjan, W.5
-
21
-
-
84860524333
-
RNA-Seq identifies SNP markers for growth traits in rainbow trout
-
Salem M, Vallejo RL, Leeds TD, Palti Y, Liu SX, et al. (2012) RNA-Seq identifies SNP markers for growth traits in rainbow trout. PLoS ONE 7: e36264.
-
(2012)
PLoS ONE
, vol.7
-
-
Salem, M.1
Vallejo, R.L.2
Leeds, T.D.3
Palti, Y.4
Liu, S.X.5
-
22
-
-
84859613736
-
Ecological Genomics of Anopheles gambiae along a latitudinal cline: a population-resequencing approach
-
Cheng C, White BJ, Kamdem C, Mockaitis K, Costantini C, et al. (2012) Ecological Genomics of Anopheles gambiae along a latitudinal cline: a population-resequencing approach. Genetics 190: 1417-1432.
-
(2012)
Genetics
, vol.190
, pp. 1417-1432
-
-
Cheng, C.1
White, B.J.2
Kamdem, C.3
Mockaitis, K.4
Costantini, C.5
-
23
-
-
0035544509
-
Adaptive evolutionary conservation: towards a unified concept for defining conservation units
-
Fraser DJ, Bernatchez L, (2001) Adaptive evolutionary conservation: towards a unified concept for defining conservation units. Molecular Ecology 10: 2741-2752.
-
(2001)
Molecular Ecology
, vol.10
, pp. 2741-2752
-
-
Fraser, D.J.1
Bernatchez, L.2
-
24
-
-
77952879875
-
Phylogeography of Leiopelma hochstetteri reveals strong genetic structure and suggests new conservation priorities
-
Fouquet A, Green DM, Waldman B, Bowsher JH, McBride KP, et al. (2010) Phylogeography of Leiopelma hochstetteri reveals strong genetic structure and suggests new conservation priorities. Conservation Genetics 11: 907-919.
-
(2010)
Conservation Genetics
, vol.11
, pp. 907-919
-
-
Fouquet, A.1
Green, D.M.2
Waldman, B.3
Bowsher, J.H.4
McBride, K.P.5
-
25
-
-
65649117685
-
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
-
Librado P, Rozas J, (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
26
-
-
0026709389
-
Estimation of levels of gene flow from DNA sequence data
-
Hudson RR, Slatkin M, Maddison WP, (1992) Estimation of levels of gene flow from DNA sequence data. Genetics 132: 583-589.
-
(1992)
Genetics
, vol.132
, pp. 583-589
-
-
Hudson, R.R.1
Slatkin, M.2
Maddison, W.P.3
-
27
-
-
85007110786
-
Arlequin ver. 3.0: an integrated software package for population genetics data analysis
-
Excoffier L, Laval G, Schneider S, (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1: 4.
-
(2005)
Evolutionary Bioinformatics Online
, vol.1
, pp. 4
-
-
Excoffier, L.1
Laval, G.2
Schneider, S.3
-
28
-
-
84890417804
-
The genetical structure of populations
-
Wright S, (1951) The genetical structure of populations. Annals of Eugenics 15: 323-354.
-
(1951)
Annals of Eugenics
, vol.15
, pp. 323-354
-
-
Wright, S.1
-
29
-
-
0000862605
-
The interpretation of population structure by F-statistics with special regards to systems of mating
-
Wright S, (1965) The interpretation of population structure by F-statistics with special regards to systems of mating. Evolution 19: 395-420.
-
(1965)
Evolution
, vol.19
, pp. 395-420
-
-
Wright, S.1
-
31
-
-
0028151986
-
Defining 'Evolutionarily Significant Units' for conservation
-
Moritz C, (1994) Defining 'Evolutionarily Significant Units' for conservation. Trends in Ecology and Evolution 9: 373-375.
-
(1994)
Trends in Ecology and Evolution
, vol.9
, pp. 373-375
-
-
Moritz, C.1
-
32
-
-
79961135005
-
-
R Core Development Team, version 2.12.2. Vienna: R Foundation for Statistical Computing. Available at
-
R Core Development Team (2011) R: A language and environment for statistical computing, version 2.12.2. Vienna: R Foundation for Statistical Computing. Available at http://cran.r-project.org/.
-
(2011)
R: A language and environment for statistical computing
-
-
-
33
-
-
0035153070
-
Pyrosequencing sheds light on DNA sequencing
-
Ronaghi M, (2001) Pyrosequencing sheds light on DNA sequencing. Genome Research 11: 3-11.
-
(2001)
Genome Research
, vol.11
, pp. 3-11
-
-
Ronaghi, M.1
-
34
-
-
40149098690
-
SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries
-
Van Tassel CP, Smith TPL, Matukumalli LK, Taylor JF, Schnabel RD, et al. (2008) SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Nature Methods 5: 247-252.
-
(2008)
Nature Methods
, vol.5
, pp. 247-252
-
-
Van Tassel, C.P.1
Smith, T.P.L.2
Matukumalli, L.K.3
Taylor, J.F.4
Schnabel, R.D.5
-
35
-
-
34547781750
-
MEGA 4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4
-
Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA 4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4. Molecular Biology and Evolution 24: 1596-1599.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
36
-
-
0005604114
-
Determining the species status of one of the world's rarest frogs: a conservation dilemma
-
Holyoake A, Waldman B, Gemmell NJ, (2001) Determining the species status of one of the world's rarest frogs: a conservation dilemma. Animal Conservation 4: 29-35.
-
(2001)
Animal Conservation
, vol.4
, pp. 29-35
-
-
Holyoake, A.1
Waldman, B.2
Gemmell, N.J.3
|