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Volumn 4, Issue 1, 2013, Pages

Homologues of bacterial TnpB-IS605 are widespread in diverse eukaryotic transposable elements

Author keywords

DNA transposon; Fanzor; Helitron; Helitron2; IS200 605; IS607; Methyltransferase; TnpB

Indexed keywords

AMINO ACID; BACTERIAL PROTEIN; DOUBLE STRANDED DNA; FANZOR 1 PROTEIN; HELITRON 2 PROTEIN; TRANSPOSASE; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN;

EID: 84876266440     PISSN: None     EISSN: 17598753     Source Type: Journal    
DOI: 10.1186/1759-8753-4-12     Document Type: Article
Times cited : (67)

References (54)
  • 1
    • 85158048416 scopus 로고    scopus 로고
    • Insertion sequences revisited
    • Washington, DC: American Society for Microbiology Press Craig NL, Craigie R, Gellert M, Lambowitz AM
    • Insertion sequences revisited. Chandler M, Mahillon J, Mobile DNA II Washington, DC: American Society for Microbiology Press, Craig NL, Craigie R, Gellert M, Lambowitz AM, 2002 305 366
    • (2002) Mobile DNA II , pp. 305-366
    • Chandler, M.1    Mahillon, J.2
  • 2
    • 0035902449 scopus 로고    scopus 로고
    • Rolling-circle transposons in eukaryotes
    • 10.1073/pnas.151269298 11447285
    • Rolling-circle transposons in eukaryotes. Kapitonov VV, Jurka J, Proc Natl Acad Sci USA 2001 98 8714 8719 10.1073/pnas.151269298 11447285
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 8714-8719
    • Kapitonov, V.V.1    Jurka, J.2
  • 3
    • 0344012045 scopus 로고    scopus 로고
    • Cryptons: A group of tyrosine-recombinase-encoding DNA transposons from pathogenic fungi
    • 10.1099/mic.0.26529-0 14600222
    • Cryptons: a group of tyrosine-recombinase-encoding DNA transposons from pathogenic fungi. Goodwin TJ, Butler MI, Poulter RT, Microbiology 2003 149 3099 3109 10.1099/mic.0.26529-0 14600222
    • (2003) Microbiology , vol.149 , pp. 3099-3109
    • Goodwin, T.J.1    Butler, M.I.2    Poulter, R.T.3
  • 4
    • 0022157359 scopus 로고
    • Sequence of Dictyostelium DIRS-1: An apparent retrotransposon with inverted terminal repeats and an internal circle junction sequence
    • 10.1016/0092-8674(85)90016-9 2416457
    • Sequence of Dictyostelium DIRS-1: an apparent retrotransposon with inverted terminal repeats and an internal circle junction sequence. Cappello J, Handelsman K, Lodish HF, Cell 1985 43 105 115 10.1016/0092-8674(85)90016-9 2416457
    • (1985) Cell , vol.43 , pp. 105-115
    • Cappello, J.1    Handelsman, K.2    Lodish, H.F.3
  • 5
    • 0034748919 scopus 로고    scopus 로고
    • The DIRS1 group of retrotransposons
    • 10.1093/oxfordjournals.molbev.a003748 11606703
    • The DIRS1 group of retrotransposons. Goodwin TJ, Poulter RT, Mol Biol Evol 2001 18 2067 2082 10.1093/oxfordjournals.molbev.a003748 11606703
    • (2001) Mol Biol Evol , vol.18 , pp. 2067-2082
    • Goodwin, T.J.1    Poulter, R.T.2
  • 6
    • 0036229438 scopus 로고    scopus 로고
    • Diversity in the serine recombinases
    • 10.1046/j.1365-2958.2002.02891.x 11972771
    • Diversity in the serine recombinases. Smith MC, Thorpe HM, Mol Microbiol 2002 44 299 307 10.1046/j.1365-2958.2002.02891.x 11972771
    • (2002) Mol Microbiol , vol.44 , pp. 299-307
    • Smith, M.C.1    Thorpe, H.M.2
  • 7
    • 85158006363 scopus 로고    scopus 로고
    • The movement of Tn3-like elements: Transposition and cointegrate resolution
    • Washington, DC: American Society for Microbiology Press Craig NL, Craigie R, Gellert M, Lambowitz AM
    • The movement of Tn3-like elements: transposition and cointegrate resolution. Grindley NDF, Mobile DNA II Washington, DC: American Society for Microbiology Press, Craig NL, Craigie R, Gellert M, Lambowitz AM, 2002 272 302
    • (2002) Mobile DNA II , pp. 272-302
    • Grindley, N.D.F.1
  • 8
    • 37049185897 scopus 로고
    • Mutator activity in maize: Timing of its activation in ontogeny
    • 10.1126/science.213.4515.1515 17780881
    • Mutator activity in maize: timing of its activation in ontogeny. Robertson DS, Science 1981 213 1515 1517 10.1126/science.213.4515.1515 17780881
    • (1981) Science , vol.213 , pp. 1515-1517
    • Robertson, D.S.1
  • 9
    • 0021800541 scopus 로고
    • Differential activity of the maize mutator
    • 10.1007/BF00383305
    • Differential activity of the maize mutator. Robertson D, Mol Genet Genomics 1985 200 9 13 10.1007/BF00383305
    • (1985) Mol Genet Genomics , vol.200 , pp. 9-13
    • Robertson, D.1
  • 10
    • 0029984672 scopus 로고    scopus 로고
    • Switching from cut-and-paste to replicative Tn7 transposition
    • 10.1126/science.272.5260.401 8602527
    • Switching from cut-and-paste to replicative Tn7 transposition. May EW, Craig NL, Science 1996 272 401 404 10.1126/science.272.5260.401 8602527
    • (1996) Science , vol.272 , pp. 401-404
    • May, E.W.1    Craig, N.L.2
  • 11
    • 0035355201 scopus 로고    scopus 로고
    • Tipping the balance between replicative and simple transposition
    • 10.1093/emboj/20.11.2923 11387225
    • Tipping the balance between replicative and simple transposition. Tavakoli NP, Derbyshire KM, EMBO J 2001 20 2923 2930 10.1093/emboj/20.11.2923 11387225
    • (2001) EMBO J , vol.20 , pp. 2923-2930
    • Tavakoli, N.P.1    Derbyshire, K.M.2
  • 12
    • 0027450385 scopus 로고
    • Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
    • 10.1016/0092-8674(93)90078-5 7679954
    • Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Luan DD, Korman MH, Jakubczak JL, Eickbush TH, Cell 1993 72 595 605 10.1016/0092-8674(93)90078-5 7679954
    • (1993) Cell , vol.72 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 13
    • 38649116679 scopus 로고    scopus 로고
    • Mechanism of IS200/IS605 family DNA transposases: Activation and transposon-directed target site selection
    • 10.1016/j.cell.2007.12.029 18243097
    • Mechanism of IS200/IS605 family DNA transposases: activation and transposon-directed target site selection. Barabas O, Ronning DR, Guynet C, Hickman AB, Ton-Hoang B, Chandler M, Dyda F, Cell 2008 132 208 220 10.1016/j.cell.2007.12.029 18243097
    • (2008) Cell , vol.132 , pp. 208-220
    • Barabas, O.1    Ronning, D.R.2    Guynet, C.3    Hickman, A.B.4    Ton-Hoang, B.5    Chandler, M.6    Dyda, F.7
  • 14
    • 0033806018 scopus 로고    scopus 로고
    • Functional organization and insertion specificity of IS607, a chimeric element of Helicobacter pylori
    • 10.1128/JB.182.19.5300-5308.2000 10986230
    • Functional organization and insertion specificity of IS607, a chimeric element of Helicobacter pylori. Kersulyte D, Mukhopadhyay AK, Shirai M, Nakazawa T, Berg DE, J Bacteriol 2000 182 5300 5308 10.1128/JB.182.19.5300-5308.2000 10986230
    • (2000) J Bacteriol , vol.182 , pp. 5300-5308
    • Kersulyte, D.1    Mukhopadhyay, A.K.2    Shirai, M.3    Nakazawa, T.4    Berg, D.E.5
  • 15
    • 0036154792 scopus 로고    scopus 로고
    • Transposable element ISHp608 of helicobacter pylori: Nonrandom geographic distribution, functional organization, and insertion specificity
    • 10.1128/jb.184.4.992-1002.2002 11807059
    • Transposable element ISHp608 of helicobacter pylori: nonrandom geographic distribution, functional organization, and insertion specificity. Kersulyte D, Velapatino B, Dailide G, Mukhopadhyay AK, Ito Y, Cahuayme L, Parkinson AJ, Gilman RH, Berg DE, J Bacteriol 2002 184 992 1002 10.1128/jb.184.4.992-1002.2002 11807059
    • (2002) J Bacteriol , vol.184 , pp. 992-1002
    • Kersulyte, D.1    Velapatino, B.2    Dailide, G.3    Mukhopadhyay, A.K.4    Ito, Y.5    Cahuayme, L.6    Parkinson, A.J.7    Gilman, R.H.8    Berg, D.E.9
  • 16
    • 76749140477 scopus 로고    scopus 로고
    • Irradiation-induced deinococcus radiodurans genome fragmentation triggers transposition of a single resident insertion sequence
    • 10.1371/journal.pgen.1000799 20090938
    • Irradiation-induced deinococcus radiodurans genome fragmentation triggers transposition of a single resident insertion sequence. Pasternak C, Ton-Hoang B, Coste G, Bailone A, Chandler M, Sommer S, PLoS Genet 2010 6 1000799 10.1371/journal.pgen.1000799 20090938
    • (2010) PLoS Genet , vol.6 , pp. 51000799
    • Pasternak, C.1    Ton-Hoang, B.2    Coste, G.3    Bailone, A.4    Chandler, M.5    Sommer, S.6
  • 17
    • 33644873699 scopus 로고    scopus 로고
    • ISfinder: The reference centre for bacterial insertion sequences
    • 10.1093/nar/gkj014 16381877
    • ISfinder: the reference centre for bacterial insertion sequences. Siguier P, Perochon J, Lestrade L, Mahillon J, Chandler M, Nucleic Acids Res 2006 34 32 D36 10.1093/nar/gkj014 16381877
    • (2006) Nucleic Acids Res , vol.34
    • Siguier, P.1    Perochon, J.2    Lestrade, L.3    Mahillon, J.4    Chandler, M.5
  • 19
    • 0033041246 scopus 로고    scopus 로고
    • Intramolecular transposition of insertion sequence IS91 results in second-site simple insertions
    • 10.1046/j.1365-2958.1999.01432.x 10411740
    • Intramolecular transposition of insertion sequence IS91 results in second-site simple insertions. Bernales I, Mendiola MV, de la Cruz F, Mol Microbiol 1999 33 223 234 10.1046/j.1365-2958.1999.01432.x 10411740
    • (1999) Mol Microbiol , vol.33 , pp. 223-234
    • Bernales, I.1    Mendiola, M.V.2    De La Cruz, F.3
  • 20
    • 0028199682 scopus 로고
    • Differential roles of the transposon termini in IS91 transposition
    • 10.1073/pnas.91.5.1922 8127907
    • Differential roles of the transposon termini in IS91 transposition. Mendiola MV, Bernales I, de la Cruz F, Proc Natl Acad Sci USA 1994 91 1922 1926 10.1073/pnas.91.5.1922 8127907
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 1922-1926
    • Mendiola, M.V.1    Bernales, I.2    De La Cruz, F.3
  • 21
    • 84988680866 scopus 로고    scopus 로고
    • Helitron-N1-SP, a family of autonomous helitrons in the sea urchin genome
    • Helitron-N1-SP, a family of autonomous helitrons in the sea urchin genome. Kapitonov VV, Jurka J, Repbase Reports 2005 5 394 394
    • (2005) Repbase Reports , vol.5 , pp. 394-394
    • Kapitonov, V.V.1    Jurka, J.2
  • 22
    • 84888840508 scopus 로고    scopus 로고
    • RPA70-Encoding helitrons in zebrafish
    • RPA70-Encoding helitrons in zebrafish. Kapitonov VV, Jurka J, Repbase Reports 2007 7 1179 1179
    • (2007) Repbase Reports , vol.7 , pp. 1179-1179
    • Kapitonov, V.V.1    Jurka, J.2
  • 23
    • 43549088103 scopus 로고    scopus 로고
    • Abundant and species-specific DINE-1 transposable elements in 12 drosophila genomes
    • 10.1186/gb-2008-9-2-r39 18291035
    • Abundant and species-specific DINE-1 transposable elements in 12 drosophila genomes. Yang HP, Barbash DA, Genome Biol 2008 9 39 10.1186/gb-2008-9-2-r39 18291035
    • (2008) Genome Biol , vol.9 , pp. 1839
    • Yang, H.P.1    Barbash, D.A.2
  • 24
    • 77952093712 scopus 로고    scopus 로고
    • A helitron-like transposon superfamily from lepidoptera disrupts (GAAA)(n) microsatellites and is responsible for flanking sequence similarity within a microsatellite family
    • 10.1007/s00239-010-9330-6 20217059
    • A helitron-like transposon superfamily from lepidoptera disrupts (GAAA)(n) microsatellites and is responsible for flanking sequence similarity within a microsatellite family. Coates BS, Sumerford DV, Hellmich RL, Lewis LC, J Mol Evol 2010 70 275 288 10.1007/s00239-010-9330-6 20217059
    • (2010) J Mol Evol , vol.70 , pp. 275-288
    • Coates, B.S.1    Sumerford, D.V.2    Hellmich, R.L.3    Lewis, L.C.4
  • 25
    • 40549086282 scopus 로고    scopus 로고
    • Computational prediction and molecular confirmation of helitron transposons in the maize genome
    • 10.1186/1471-2164-9-51 18226261
    • Computational prediction and molecular confirmation of helitron transposons in the maize genome. Du C, Caronna J, He L, Dooner HK, BMC Genomics 2008 9 51 10.1186/1471-2164-9-51 18226261
    • (2008) BMC Genomics , vol.9 , pp. 51
    • Du, C.1    Caronna, J.2    He, L.3    Dooner, H.K.4
  • 26
    • 69149101693 scopus 로고    scopus 로고
    • Structure-based discovery and description of plant and animal helitrons
    • 10.1073/pnas.0905563106 19622734
    • Structure-based discovery and description of plant and animal helitrons. Yang L, Bennetzen JL, Proc Natl Acad Sci USA 2009 106 12832 12837 10.1073/pnas.0905563106 19622734
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 12832-12837
    • Yang, L.1    Bennetzen, J.L.2
  • 27
    • 33748867012 scopus 로고    scopus 로고
    • Phylogenomic analysis of the GIY-YIG nuclease superfamily
    • 10.1186/1471-2164-7-98 16646971
    • Phylogenomic analysis of the GIY-YIG nuclease superfamily. Dunin-Horkawicz S, Feder M, Bujnicki JM, BMC Genomics 2006 7 98 10.1186/1471-2164-7-98 16646971
    • (2006) BMC Genomics , vol.7 , pp. 98
    • Dunin-Horkawicz, S.1    Feder, M.2    Bujnicki, J.M.3
  • 28
    • 75549086595 scopus 로고    scopus 로고
    • REBASE-A database for DNA restriction and modification: Enzymes, genes and genomes
    • 10.1093/nar/gkp874 19846593
    • REBASE-a database for DNA restriction and modification: enzymes, genes and genomes. Roberts RJ, Vincze T, Posfai J, Macelis D, Nucleic Acids Res 2010 38 234 D236 10.1093/nar/gkp874 19846593
    • (2010) Nucleic Acids Res , vol.38
    • Roberts, R.J.1    Vincze, T.2    Posfai, J.3    Macelis, D.4
  • 30
    • 65349136539 scopus 로고    scopus 로고
    • New superfamilies of eukaryotic DNA transposons and their internal divisions
    • 10.1093/molbev/msp013 19174482
    • New superfamilies of eukaryotic DNA transposons and their internal divisions. Bao W, Jurka MG, Kapitonov VV, Jurka J, Mol Biol Evol 2009 26 983 993 10.1093/molbev/msp013 19174482
    • (2009) Mol Biol Evol , vol.26 , pp. 983-993
    • Bao, W.1    Jurka, M.G.2    Kapitonov, V.V.3    Jurka, J.4
  • 31
    • 79956364806 scopus 로고    scopus 로고
    • The catalytic domain of all eukaryotic cut-and-paste transposase superfamilies
    • 10.1073/pnas.1104208108 21518873
    • The catalytic domain of all eukaryotic cut-and-paste transposase superfamilies. Yuan YW, Wessler SR, Proc Natl Acad Sci USA 2011 108 7884 7889 10.1073/pnas.1104208108 21518873
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 7884-7889
    • Yuan, Y.W.1    Wessler, S.R.2
  • 32
    • 0033901978 scopus 로고    scopus 로고
    • Tissue-specific gene expression identifies a gene in the lysogenic phage gifsy-1 that affects salmonella enterica serovar typhimurium survival in Peyer's patches
    • 10.1128/JB.182.16.4406-4413.2000 10913072
    • Tissue-specific gene expression identifies a gene in the lysogenic phage gifsy-1 that affects salmonella enterica serovar typhimurium survival in Peyer's patches. Stanley TL, Ellermeier CD, Slauch JM, J Bacteriol 2000 182 4406 4413 10.1128/JB.182.16.4406-4413.2000 10913072
    • (2000) J Bacteriol , vol.182 , pp. 4406-4413
    • Stanley, T.L.1    Ellermeier, C.D.2    Slauch, J.M.3
  • 33
    • 0035512769 scopus 로고    scopus 로고
    • Tn7: Smarter than we thought
    • 10.1038/35099006 11715047
    • Tn7: smarter than we thought. Peters JE, Craig NL, Nat Rev Mol Cell Biol 2001 2 806 814 10.1038/35099006 11715047
    • (2001) Nat Rev Mol Cell Biol , vol.2 , pp. 806-814
    • Peters, J.E.1    Craig, N.L.2
  • 35
    • 77955573664 scopus 로고    scopus 로고
    • Origin and evolution of LINE-1 derived half-L1 retrotransposons (HAL1)
    • 10.1016/j.gene.2010.06.005 20600705
    • Origin and evolution of LINE-1 derived "half-L1" retrotransposons (HAL1). Bao W, Jurka J, Gene 2010 465 9 16 10.1016/j.gene.2010. 06.005 20600705
    • (2010) Gene , vol.465 , pp. 9-16
    • Bao, W.1    Jurka, J.2
  • 36
    • 0030042251 scopus 로고    scopus 로고
    • Cytoplasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA
    • 8599946
    • Cytoplasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA. Hohjoh H, Singer MF, EMBO J 1996 15 630 639 8599946
    • (1996) EMBO J , vol.15 , pp. 630-639
    • Hohjoh, H.1    Singer, M.F.2
  • 37
    • 0035163939 scopus 로고    scopus 로고
    • Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon
    • 10.1128/MCB.21.2.467-475.2001 11134335
    • Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon. Martin SL, Bushman FD, Mol Cell Biol 2001 21 467 475 10.1128/MCB.21.2.467-475.2001 11134335
    • (2001) Mol Cell Biol , vol.21 , pp. 467-475
    • Martin, S.L.1    Bushman, F.D.2
  • 38
    • 0032126345 scopus 로고    scopus 로고
    • Cytosine methylation of repeated sequences in eukaryotes: The role of DNA pairing
    • 10.1016/S0968-0004(98)01225-0 9697415
    • Cytosine methylation of repeated sequences in eukaryotes: the role of DNA pairing. Bender J, Trends Biochem Sci 1998 23 252 256 10.1016/S0968-0004(98) 01225-0 9697415
    • (1998) Trends Biochem Sci , vol.23 , pp. 252-256
    • Bender, J.1
  • 39
    • 0034882046 scopus 로고    scopus 로고
    • DNA methylation inhibits expression and transposition of the neurospora Tad retrotransposon
    • 10.1007/s004380100472 11459196
    • DNA methylation inhibits expression and transposition of the neurospora Tad retrotransposon. Zhou Y, Cambareri EB, Kinsey JA, Mol Genet Genomics 2001 265 748 754 10.1007/s004380100472 11459196
    • (2001) Mol Genet Genomics , vol.265 , pp. 748-754
    • Zhou, Y.1    Cambareri, E.B.2    Kinsey, J.A.3
  • 40
    • 0022369785 scopus 로고
    • IS10 transposition is regulated by DNA adenine methylation
    • 10.1016/0092-8674(85)90017-0 3000598
    • IS10 transposition is regulated by DNA adenine methylation. Roberts D, Hoopes BC, McClure WR, Kleckner N, Cell 1985 43 117 130 10.1016/0092-8674(85) 90017-0 3000598
    • (1985) Cell , vol.43 , pp. 117-130
    • Roberts, D.1    Hoopes, B.C.2    McClure, W.R.3    Kleckner, N.4
  • 41
    • 0027458118 scopus 로고
    • The Tn5 transposon
    • 10.1146/annurev.mi.47.100193.004501 7504907
    • The Tn5 transposon. Reznikoff WS, Annu Rev Microbiol 1993 47 945 963 10.1146/annurev.mi.47.100193.004501 7504907
    • (1993) Annu Rev Microbiol , vol.47 , pp. 945-963
    • Reznikoff, W.S.1
  • 42
    • 0024741191 scopus 로고
    • Involvement of E. coli dcm methylase in Tn3 transposition
    • 2561572
    • Involvement of E. coli dcm methylase in Tn3 transposition. Yang MK, Ser SC, Lee CH, Proc Natl Sci Counc Repub China B 1989 13 276 283 2561572
    • (1989) Proc Natl Sci Counc Repub China B , vol.13 , pp. 276-283
    • Yang, M.K.1    Ser, S.C.2    Lee, C.H.3
  • 43
    • 0035189042 scopus 로고    scopus 로고
    • Roles of DNA adenine methylation in regulating bacterial gene expression and virulence
    • 10.1128/IAI.69.12.7197-7204.2001 11705888
    • Roles of DNA adenine methylation in regulating bacterial gene expression and virulence. Low DA, Weyand NJ, Mahan MJ, Infect Immun 2001 69 7197 7204 10.1128/IAI.69.12.7197-7204.2001 11705888
    • (2001) Infect Immun , vol.69 , pp. 7197-7204
    • Low, D.A.1    Weyand, N.J.2    Mahan, M.J.3
  • 44
    • 33846432037 scopus 로고    scopus 로고
    • DNA adenine methylation and bacterial pathogenesis
    • 17126598
    • DNA adenine methylation and bacterial pathogenesis. Heusipp G, Falker S, Schmidt MA, Int J Med Microbiol 2007 297 1 7 17126598
    • (2007) Int J Med Microbiol , vol.297 , pp. 1-7
    • Heusipp, G.1    Falker, S.2    Schmidt, M.A.3
  • 47
    • 0034780910 scopus 로고    scopus 로고
    • Horizontal gene transfer in prokaryotes: Quantification and classification
    • 10.1146/annurev.micro.55.1.709 11544372
    • Horizontal gene transfer in prokaryotes: quantification and classification. Koonin EV, Makarova KS, Aravind L, Annu Rev Microbiol 2001 55 709 742 10.1146/annurev.micro.55.1.709 11544372
    • (2001) Annu Rev Microbiol , vol.55 , pp. 709-742
    • Koonin, E.V.1    Makarova, K.S.2    Aravind, L.3
  • 48
    • 47649104484 scopus 로고    scopus 로고
    • Horizontal gene transfer in eukaryotic evolution
    • 10.1038/nrg2386 18591983
    • Horizontal gene transfer in eukaryotic evolution. Keeling PJ, Palmer JD, Nat Rev Genet 2008 9 605 618 10.1038/nrg2386 18591983
    • (2008) Nat Rev Genet , vol.9 , pp. 605-618
    • Keeling, P.J.1    Palmer, J.D.2
  • 49
    • 0036673472 scopus 로고    scopus 로고
    • Automated de novo identification of repeat sequence families in sequenced genomes
    • 10.1101/gr.88502 12176934
    • Automated de novo identification of repeat sequence families in sequenced genomes. Bao Z, Eddy SR, Genome Res 2002 12 1269 1276 10.1101/gr.88502 12176934
    • (2002) Genome Res , vol.12 , pp. 1269-1276
    • Bao, Z.1    Eddy, S.R.2
  • 51
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: Improvement in accuracy of multiple sequence alignment
    • 10.1093/nar/gki198 15661851
    • MAFFT version 5: improvement in accuracy of multiple sequence alignment. Katoh K, Kuma K, Toh H, Miyata T, Nucleic Acids Res 2005 33 511 518 10.1093/nar/gki198 15661851
    • (2005) Nucleic Acids Res , vol.33 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 52
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
    • 10.1093/sysbio/syq010 20525638
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O, Syst Biol 2010 59 307 321 10.1093/sysbio/syq010 20525638
    • (2010) Syst Biol , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 54
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • 10.1093/molbev/msm092 17488738
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Tamura K, Dudley J, Nei M, Kumar S, Mol Biol Evol 2007 24 1596 1599 10.1093/molbev/msm092 17488738
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.