-
2
-
-
69449089577
-
Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates
-
Alfaro M., Santini F., Brock C., Alamillo H., Dornburg A., Rabosky D., Carnevale G., Harmon L. 2009. Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates. Proc. Natl Acad. Sci. U S A 106(32):13410-13414.
-
(2009)
Proc. Natl Acad. Sci. U S A
, vol.106
, Issue.32
, pp. 13410-13414
-
-
Alfaro, M.1
Santini, F.2
Brock, C.3
Alamillo, H.4
Dornburg, A.5
Rabosky, D.6
Carnevale, G.7
Harmon, L.8
-
4
-
-
0038325772
-
Testing for phylogenetic signal in comparative data:behavioral traits are more labile
-
Blomberg S., Garland T., Ives A. 2003. Testing for phylogenetic signal in comparative data:behavioral traits are more labile. Evolution 57(4):717-745.
-
(2003)
Evolution
, vol.57
, Issue.4
, pp. 717-745
-
-
Blomberg, S.1
Garland, T.2
Ives, A.3
-
5
-
-
77958049426
-
Time, species, and separating their effects on trait variance in clades
-
Bokma F. 2010. Time, species, and separating their effects on trait variance in clades. Syst. Biol. 59(5):602-607
-
(2010)
Syst. Biol.
, vol.59
, Issue.5
, pp. 602-607
-
-
Bokma, F.1
-
6
-
-
84876217018
-
2011. apTreeshape:Analyses of Phylogenetic Treeshape
-
[Internet]. Available from:URL
-
Bortolussi N., Durand E., Blum M., Francois O. 2011. apTreeshape:Analyses of Phylogenetic Treeshape. R package version 1.4- 4 [Internet]. Available from:URL http://CRAN.R-project.org/ package=apTreeshape.
-
R Package Version
, pp. 14-24
-
-
Bortolussi, N.1
Durand, E.2
Blum, M.3
Francois, O.4
-
7
-
-
84876271734
-
-
CRAN 2012. The comprehensive R archive network [Internet]. Available from:URL
-
CRAN 2012. The comprehensive R archive network [Internet]. Available from:URL http://cran.r-project.org.
-
-
-
-
8
-
-
84865778031
-
Transition probabilities for general birth-death processes with applications in ecology, genetics, and evolution
-
Crawford F. W., Suchard M. A. 2012. Transition probabilities for general birth-death processes with applications in ecology, genetics, and evolution. J. Math. Biol. 65:553-580.
-
(2012)
J. Math. Biol.
, vol.65
, pp. 553-580
-
-
Crawford, F.W.1
Suchard, M.A.2
-
9
-
-
84864561924
-
Conceptual issues in phylogeny and conservation: A reply to Faith and Baker
-
Crozier R., Agapow P., Dunnett L. 2006. Conceptual issues in phylogeny and conservation: A reply to Faith and Baker. Evol. Bioinform. Online 2:197-199.
-
(2006)
Evol. Bioinform. Online
, vol.2
, pp. 197-199
-
-
Crozier, R.1
Agapow, P.2
Dunnett, L.3
-
11
-
-
77953128894
-
Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences
-
Eizirik E., Murphy W., Koepfli K., Johnson W., Dragoo J., Wayne R., O'Brien S. 2010. Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences. Mol. Phylogenet. Evol. 56(1):49-63.
-
(2010)
Mol. Phylogenet. Evol.
, vol.56
, Issue.1
, pp. 49-63
-
-
Eizirik, E.1
Murphy, W.2
Koepfli, K.3
Johnson, W.4
Dragoo, J.5
Wayne, R.6
O'Brien, S.7
-
12
-
-
0002224909
-
Punctuated equilibria:an alternative to phyletic gradualism
-
Eldredge N., Gould S.J. 1972. Punctuated equilibria:an alternative to phyletic gradualism. Model in Paleobiol. 82:115.
-
(1972)
Model in Paleobiol.
, vol.82
, pp. 115
-
-
Eldredge, N.1
Gould, S.J.2
-
14
-
-
72849129069
-
The role of the phylogenetic diversity measure, pd, in bio-informatics:getting the definition right
-
Faith D. 2006. The role of the phylogenetic diversity measure, pd, in bio-informatics:getting the definition right. Evol. Bioinform. Online 2:277.
-
(2006)
Evol. Bioinform. Online
, vol.2
, pp. 277
-
-
Faith, D.1
-
15
-
-
34047251829
-
Phylogenetic diversity (PD) and biodiversity conservation:some bioinformatics challenges
-
Faith D., Baker A. 2006. Phylogenetic diversity (PD) and biodiversity conservation:some bioinformatics challenges. Evol. Bioinform. Online2:121.
-
(2006)
Evol. Bioinform. Online
, vol.2
, pp. 121
-
-
Faith, D.1
Baker, A.2
-
16
-
-
39749116275
-
Distribution of phylogenetic diversity under random extinction
-
Faller B., Pardi F., Steel M. 2008. Distribution of phylogenetic diversity under random extinction. J. Theor. Biol. 251(2):286-296.
-
(2008)
J. Theor. Biol.
, vol.251
, Issue.2
, pp. 286-296
-
-
Faller, B.1
Pardi, F.2
Steel, M.3
-
17
-
-
0022203256
-
Phylogenies and the comparative method
-
FelsensteinJ. 1985. Phylogenies and the comparative method. Am. Nat. 125(1):1-15.
-
(1985)
Am. Nat.
, vol.125
, Issue.1
, pp. 1-15
-
-
Felsenstein, J.1
-
19
-
-
0027799346
-
Contributions of individual taxa to overall morphological disparity
-
Foote M. 1993. Contributions of individual taxa to overall morphological disparity Paleobiology 19(4):403-419.
-
(1993)
Paleobiology
, vol.19
, Issue.4
, pp. 403-419
-
-
Foote, M.1
-
20
-
-
0033605215
-
Evolutionary and preservational constraints on origins of biologic groups:divergence times of eutherian mammals
-
Foote M., Hunter J. P., Janis C. M., Sepkoski J. J. Jr. 1999. Evolutionary and preservational constraints on origins of biologic groups:divergence times of eutherian mammals. Science 283(5406):1310-1314.
-
(1999)
Science
, vol.283
, Issue.5406
, pp. 1310-1314
-
-
Foote, M.1
Hunter, J.P.2
Janis, C.M.3
Sepkoski Jr., J.J.4
-
21
-
-
11944256302
-
Procedures for the analysis of comparative data using phylogenetically independent contrasts
-
Garland T., Harvey P., Ives A. 1992. Procedures for the analysis of comparative data using phylogenetically independent contrasts. Syst. Biol. 41(1):18-32.
-
(1992)
Syst. Biol.
, vol.41
, Issue.1
, pp. 18-32
-
-
Garland, T.1
Harvey, P.2
Ives, A.3
-
22
-
-
48049107322
-
The conditioned reconstructed process
-
Gernhard T. 2008. The conditioned reconstructed process. J. Theor. Biol. 253(4):769-778.
-
(2008)
J. Theor. Biol.
, vol.253
, Issue.4
, pp. 769-778
-
-
Gernhard, T.1
-
23
-
-
49649120118
-
Stochastic properties of generalised Yule models, with biodiversity applications
-
Gernhard T., Hartmann K., Steel M. 2008. Stochastic properties of generalised Yule models, with biodiversity applications. J. Math. Biol. 57(5):713-735.
-
(2008)
J. Math. Biol.
, vol.57
, Issue.5
, pp. 713-735
-
-
Gernhard, T.1
Hartmann, K.2
Steel, M.3
-
24
-
-
0022840504
-
Carnivore life history patterns:allometric, phylogenetic, and ecological associations
-
Gittleman J. 1986. Carnivore life history patterns:allometric, phylogenetic, and ecological associations. Am. Nat. 127(6):744-771.
-
(1986)
Am. Nat.
, vol.127
, Issue.6
, pp. 744-771
-
-
Gittleman, J.1
-
26
-
-
85032131319
-
Punctuated equilibria: The tempo and mode of evolution reconsidered
-
Gould S., Eldredge N. 1977. Punctuated equilibria: The tempo and mode of evolution reconsidered. Paleobiology 3(2):115-151.
-
(1977)
Paleobiology
, vol.3
, Issue.2
, pp. 115-151
-
-
Gould, S.1
Eldredge, N.2
-
28
-
-
84876244533
-
Probability and random processes
-
University Press
-
Grimmett G., Stirzaker D. 2001. Probability and random processes. Oxford:Oxford University Press.
-
(2001)
Oxford:Oxford
-
-
Grimmett, G.1
Stirzaker, D.2
-
29
-
-
77954186480
-
Geiger:analysis of evolutionary diversification
-
[Internet]. Available from:URL
-
Harmon L., Weir J., Brock C., Glor R., Challenger W., Hunt G. 2009. geiger:analysis of evolutionary diversification. R package version 1.3-1 [Internet]. Available from:URL http://CRAN.R- project.org/package=geiger.
-
(2009)
R Package Version 1.3-1
-
-
Harmon, L.1
Weir, J.2
Brock, C.3
Glor, R.4
Challenger, W.5
Hunt, G.6
-
32
-
-
36749089409
-
Counting labeled transitions in continuous- time Markov models of evolution
-
Minin V., Suchard M. 2008. Counting labeled transitions in continuous- time Markov models of evolution. J. Math. Biol. 56(3):391-412.
-
(2008)
J. Math. Biol.
, vol.56
, Issue.3
, pp. 391-412
-
-
Minin, V.1
Suchard, M.2
-
33
-
-
84863154596
-
Branch lengths on birth-death trees and the expected loss of phylogenetic diversity
-
Mooers A., Gascuel O., Stadler T., Li H., Steel M. 2011. Branch lengths on birth-death trees and the expected loss of phylogenetic diversity. Syst. Biol. 61(2):195-203.
-
(2011)
Syst. Biol.
, vol.61
, Issue.2
, pp. 195-203
-
-
Mooers, A.1
Gascuel, O.2
Stadler, T.3
Li, H.4
Steel, M.5
-
34
-
-
0036554568
-
Strategies to protect biological diversity and the evolutionary processes that sustain it
-
Moritz C. 2002. Strategies to protect biological diversity and the evolutionary processes that sustain it. Syst. Biol. 51(2):238-254.
-
(2002)
Syst. Biol.
, vol.51
, Issue.2
, pp. 238-254
-
-
Moritz, C.1
-
35
-
-
79955513833
-
Probability distributions of ancestries and genealogical distances on stochastically generated rooted binary trees
-
Mulder W. 2011. Probability distributions of ancestries and genealogical distances on stochastically generated rooted binary trees. J. Theor. Biol. 280(1):139-145.
-
(2011)
J. Theor. Biol.
, vol.280
, Issue.1
, pp. 139-145
-
-
Mulder, W.1
-
36
-
-
33845380445
-
Birth-death models in macroevolution
-
Nee S. 2006. Birth-death models in macroevolution. Annu. Rev. Ecol. Evol. Syst. 37:1-17
-
(2006)
Annu. Rev. Ecol. Evol. Syst.
, vol.37
, pp. 1-17
-
-
Nee, S.1
-
38
-
-
0004030389
-
Algorithmic probability: A collection of problems (Stochastic Modeling Series)
-
London: Chapman and Hall/
-
Neuts M. F. 1995. Algorithmic probability: A collection of problems (Stochastic Modeling Series). London:Chapman and Hall/CRC.
-
(1995)
CRC
-
-
Neuts, M.F.1
-
40
-
-
33747056328
-
Testing for different rates of continuous trait evolution using likelihood
-
O'Meara B. C., Ané C., Sanderson M. J., Wainwright P. C. 2006. Testing for different rates of continuous trait evolution using likelihood. Evolution 60(5):922-933.
-
(2006)
Evolution
, vol.60
, Issue.5
, pp. 922-933
-
-
O'Meara, B.C.1
Ané, C.2
Sanderson, M.J.3
Wainwright, P.C.4
-
41
-
-
1042304216
-
APE:analyses of phylogenetics and evolution in R language
-
Paradis E., Claude J., Strimmer K. 2004. APE:analyses of phylogenetics and evolution in R language. Bioinformatics 20(2):289-290.
-
(2004)
Bioinformatics
, vol.20
, Issue.2
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
42
-
-
16544372620
-
Evolution:How do characters evolve?
-
doi:10.1038/nature03092
-
Purvis A. 2004. Evolution:How do characters evolve? Nature 432(7014). doi:10.1038/nature03092.
-
(2004)
Nature
, vol.432
, pp. 7014
-
-
Purvis, A.1
-
43
-
-
12044252802
-
Polytomies in comparative analyses of continuous characters
-
Purvis A., Garland T. 1993. Polytomies in comparative analyses of continuous characters. Syst. Biol. 42(4):569-575.
-
(1993)
Syst. Biol.
, vol.42
, Issue.4
, pp. 569-575
-
-
Purvis, A.1
Garland, T.2
-
45
-
-
0029818407
-
Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference
-
Rannala B., Yang Z. 1996. Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference. J. Mol. Evol. 43(3):304-311.
-
(1996)
J. Mol. Evol.
, vol.43
, Issue.3
, pp. 304-311
-
-
Rannala, B.1
Yang, Z.2
-
46
-
-
78650722302
-
Phylogenetic signal and linear regression on species data
-
Revell L. 2010. Phylogenetic signal and linear regression on species data. Methods Ecol. Evol. 1(4):319-329.
-
(2010)
Methods Ecol. Evol.
, vol.1
, Issue.4
, pp. 319-329
-
-
Revell, L.1
-
47
-
-
3142696271
-
Cladogenesis and morphological diversification in passerine birds
-
Ricklefs R. 2004. Cladogenesis and morphological diversification in passerine birds. Nature 430(6997):338-341.
-
(2004)
Nature
, vol.430
, Issue.6997
, pp. 338-341
-
-
Ricklefs, R.1
-
48
-
-
33644586735
-
Time, species, and the generation of trait variance in clades
-
Ricklefs R. 2006. Time, species, and the generation of trait variance in clades. Syst. Biol. 55(1):151-159.
-
(2006)
Syst. Biol.
, vol.55
, Issue.1
, pp. 151-159
-
-
Ricklefs, R.1
-
49
-
-
84862694440
-
Interspecies correlation for neutrally evolving traits
-
Sagitov S., Bartoszek K. 2012. Interspecies correlation for neutrally evolving traits. J. Theor. Biol. 309:11-19
-
(2012)
J. Theor. Biol.
, vol.309
, pp. 11-19
-
-
Sagitov, S.1
Bartoszek, K.2
-
50
-
-
33947178282
-
Testing for unequal rates of morphological diversification in the absence of a detailed phylogeny: A case study from characiform fishes
-
Sidlauskas B. 2007. Testing for unequal rates of morphological diversification in the absence of a detailed phylogeny: A case study from characiform fishes. Evolution 61(2):299-316.
-
(2007)
Evolution
, vol.61
, Issue.2
, pp. 299-316
-
-
Sidlauskas, B.1
-
51
-
-
84857692151
-
Fitting models of continuous trait evolution to incompletely sampled comparative data using Approximate Bayesian Computation
-
Slater G., Harmon L., Wegmann D., Joyce P., Revell L., Alfaro M. 2012. Fitting models of continuous trait evolution to incompletely sampled comparative data using Approximate Bayesian Computation. Evolution 66:752-762.
-
(2012)
Evolution
, vol.66
, pp. 752-762
-
-
Slater, G.1
Harmon, L.2
Wegmann, D.3
Joyce, P.4
Revell, L.5
Alfaro, M.6
-
52
-
-
80051988868
-
Simulating trees with a fixed number of extant species
-
Stadler T. 2011. Simulating trees with a fixed number of extant species. Syst. Biol. 60(5):676-684.
-
(2011)
Syst. Biol.
, vol.60
, Issue.5
, pp. 676-684
-
-
Stadler, T.1
-
54
-
-
84155173537
-
Distribution of branch lengths and phylogenetic diversity under homogeneous speciation models
-
Stadler T., Steel M. 2012. Distribution of branch lengths and phylogenetic diversity under homogeneous speciation models. J. Theor. Biol. 297:33-40.
-
(2012)
J. Theor. Biol.
, vol.297
, pp. 33-40
-
-
Stadler, T.1
Steel, M.2
-
55
-
-
0035084255
-
Properties of phylogenetic trees generated by Yule-type speciation models
-
Steel M., McKenzie A. 2001. Properties of phylogenetic trees generated by Yule-type speciation models. Math. Biosci. 170(1):91-112.
-
(2001)
Math. Biosci.
, vol.170
, Issue.1
, pp. 91-112
-
-
Steel, M.1
McKenzie, A.2
-
56
-
-
84876218921
-
The "shape" of phylogenies under simple random speciation models
-
random speciation models. Biol. Evol. Statist. Phys.
-
Steel M., McKenzie A. 2002. The "shape" of phylogenies under simple random speciation models. Biol. Evol. Statist. Phys. 585:162-180.
-
(2002)
Biol. Evol. Statist. Phys.
, vol.585
, pp. 162-180
-
-
Steel, M.1
McKenzie, A.2
-
57
-
-
77955928122
-
The expected length of pendant and interior edges of a Yule tree
-
Steel M., Mooers A. 2010. The expected length of pendant and interior edges of a Yule tree. Appl. Math. Lett. 23(11):1315-1319.
-
(2010)
Appl. Math. Lett.
, vol.23
, Issue.11
, pp. 1315-1319
-
-
Steel, M.1
Mooers, A.2
-
58
-
-
79955411243
-
Why the phylogenetic regression appears robust to tree misspecification
-
Stone E. 2011. Why the phylogenetic regression appears robust to tree misspecification. Syst. Biol. 60(3):245-260.
-
(2011)
Syst. Biol.
, vol.60
, Issue.3
, pp. 245-260
-
-
Stone, E.1
-
59
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh P., Hamady M., Yatsunenko T., Cantarel B., Duncan A., Ley R., Sogin M., Jones W., Roe B., Affourtit J., Egholm M., Henrissat B., Heath A.C., Knight R., Gordon J.I. 2008. A core gut microbiome in obese and lean twins. Nature 457(7228):480-484.
-
(2008)
Nature
, vol.457
, Issue.7228
, pp. 480-484
-
-
Turnbaugh, P.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.4
Duncan, A.5
Ley, R.6
Sogin, M.7
Jones, W.8
Roe, B.9
Affourtit, J.10
Egholm, M.11
Henrissat, B.12
Heath, A.C.13
Knight, R.14
Gordon, J.I.15
-
61
-
-
0001778604
-
A mathematical theory of evolution, based on the conclusions of Dr. J. C. Willis, F.R.S. Philos
-
Yule G. U. 1925. A mathematical theory of evolution, based on the conclusions of Dr. J. C. Willis, F.R.S. Philos. Tran. Roy. Soc. Lon. B 213:21-87
-
(1925)
Tran. Roy. Soc. Lon. B
, vol.213
, pp. 21-87
-
-
Yule, G.U.1
-
62
-
-
0029032827
-
Evidence from molecular systematics for decreased avian diversification in the pleistocene epoch
-
Zink R. M., Slowinski J. B. 1995. Evidence from molecular systematics for decreased avian diversification in the pleistocene epoch. Proc. Natl Acad. Sci. U S A 92(13):5832-5835.
-
(1995)
Proc. Natl Acad. Sci. U S A
, vol.92
, Issue.13
, pp. 5832-5835
-
-
Zink, R.M.1
Slowinski, J.B.2
|