Distribution and origin of oxygen-dependent and oxygen-independent forms of mg-protoporphyrin monomethylester cyclase among phototrophic proteobacteria

Applied and Environmental Microbiology

Volumn 79, Issue 8, 2013, Pages 2596-2604

  Boldareva Nuianzina, Ekaterina N ^a   Bláhová, Zuzana ^a,b   Sobotka, Roman ^a,b   Koblížek, Michal ^a,b  

^a INSTITUTE OF MICROBIOLOGY   (China)

^b UNIVERSITY OF SOUTH BOHEMIA   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

AEROBIC ANOXYGENIC PHOTOTROPHS; BACTERIOCHLOROPHYLLS; BIOSYNTHESIS PATHWAYS; HORIZONTAL GENE TRANSFER; PHOTOSYNTHESIS GENES; PHOTOTROPHIC BACTERIUM; PRIMARY SEQUENCES; PURPLE NON-SULFUR BACTERIA;

BACTERIA; BIOCHEMISTRY; CHLOROPHYLL; GENE TRANSFER; OXYGEN; SURVEYS;

GENES;

BACTERIAL PROTEIN; ISOPROTEIN; MAGNESIUM PROTOPORPHYRIN MONOMETHYL ESTER OXIDATIVE CYCLASE; OXYGEN; OXYGENASE;

CHLOROPHYLL; DATA ACQUISITION; EMBANKMENT; GENE; GENE TRANSFER; MAGNESIUM; MICROBIAL COMMUNITY; OXYGENATION; PHOTOSYNTHESIS; PHYLOGENY; SURVEYING;

ARTICLE; BACTERIAL GENOME; CHEMISTRY; CYANOBACTERIUM; ENZYMOLOGY; GENETICS; METABOLISM; PHOTOSYNTHESIS; PHYLOGENY; PROTEOBACTERIA;

BACTERIAL PROTEINS; CYANOBACTERIA; GENOME, BACTERIAL; OXYGEN; OXYGENASES; PHOTOSYNTHESIS; PHYLOGENY; PROTEIN ISOFORMS; PROTEOBACTERIA;

CHROMATIACEAE; CYANOBACTERIA; PHOTOBACTERIA; PROTEOBACTERIA; RHODOSPIRILLACEAE;

EID: 84876186732     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00104-13     Document Type: Article

References (37)

1. Blankenship RE. 2010. Early evolution of photosynthesis. Plant Physiol. 154:434-438.
2. Des Marais DJ. 2000. Evolution: when did photosynthesis emerge on Earth? Science 289:1703-1705.
3. Buick R. 2008. When did oxygenic photosynthesis evolve? Philos. Trans. R. Soc. B 363:2731-2743.
4. Holland HD. 2006. The oxygenation of the atmosphere and oceans. Philos. Trans. R. Soc. B 361:903-915.
5. Yurkov VV, Csotonyi JT. 2009. New light on aerobic anoxygenic phototrophs, p 31-55. In Hunter CN, Daldal F, Thurnauer MC, Beatty JT (ed),The purple phototrophic bacteria. Advances in photosynthesis and respiration, vol 28. Springer-Verlag, New York, NY.
6. Hauruseu D, Koblížek M. 2012. The influence of light on carbon utilization in aerobic anoxygenic phototrophs. Appl. Environ. Microbiol. 78: 7414-7419.
7. Kolber ZS, Plumley FG, Lang AS, Beatty JT, Blankenship RE, VanDover CL, Vetriani C, Koblizek M, Rathgeber C, Falkowski PG. 2001. Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean. Science 292:2492-2495.
8. Jiao N, Zhang Y, Zeng Y, Hong N, Liu R, Chen F, Wang P. 2007. Distinct distribution pattern of abundance and diversity of aerobic anoxygenic phototrophic bacteria in the global ocean. Environ. Microbiol. 9:3091-3099.
9. Yutin N, Suzuki MT, Teeling H, Weber M, Venter JC, Rusch DB, Béjà O. 2007. Assessing diversity and biogeography of aerobic anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using the Global Ocean Sampling expedition metagenomes. Environ. Microbiol. 9:1464-1475.
10. Koblížek M. 2011. Role of photoheterotrophic bacteria in the marine carbon cycle, p 49-51. In Jiao N, Azam F, Sanders S (ed), Microbial carbon pump in the ocean. Science/AAAS, Washington, DC.
11. Waidner LA, Kirchman DL. 2007. Aerobic anoxygenic phototrophic bacteria attached to particles in turbid waters of the Delaware and Chesapeake estuaries. Appl. Environ. Microbiol. 73:3936-3944.
12. Mašín M, Nedoma J, Pechar L, Koblížek M. 2008. Distribution of aerobic anoxygenic phototrophs in temperate freshwater systems. Environ. Microbiol. 10:1988-1996.
13. Medová H, Boldareva E, Hrouzek P, Borzenko S, Namsaraev Z, Gorlenko V, Namsaraev B, Koblížek M. 2011. High abundances of aerobic anoxygenic phototrophs in saline steppe lakes. FEMS Microbiol. Ecol. 76:393-400.
14. Willows R, Kriegel M. 2009. Biosynthesis of bacteriochlorophylls in purple bacteria, p 57-79. In Hunter CN, Daldal F, Thurnauer MC, Beatty JT (ed), The purple phototrophic bacteria. Advances in photosynthesis and respiration, vol 28. Springer-Verlag, New York, NY.
15. Chew AGM, Bryant DA. 2007. Chlorophyll biosynthesis in bacteria: the origins of structural and functional diversity. Annu. Rev. Microbiol. 61: 113-129.
16. Chereskin BM, Wong YS, Castelfranco PA. 1982. In vitro synthesis of the chlorophyll isocyclic ring: transformation of Mg-protoporphyrin IX and Mg-protoporphyrin IX monomethyl ester into Mg-2,4-divinylpheoporphyrin a5. Plant Physiol. 70:987-993.
17. Gough SP, Petersen BO, Duus JØ. 2000. Anaerobic chlorophyll isocyclic ring formation in Rhodobacter capsulatus requires a cobalamin cofactor. Proc. Natl. Acad. Sci. U. S. A. 97:6908-6913.
18. Walker CJ, Mansfield KE, Smith KM, Castelfranco PA. 1989. Incorporation of atmospheric oxygen into the carbonyl functionality of the protochlorophyllide isocyclic ring. Biochem. J. 257:599-602.
19. Bollivar DW, Beale SI. 1996. The chlorophyll biosynthetic enzyme Mgprotoporphyrin IX monomethyl ester (oxidative) cyclase: characterization and partial purification from Chlamydomonas reinhardtii and Synechocystis sp. PCC 6803. Plant Physiol. 112:105-114.
20. Pinta V, Picaud M, Reiss-Husson F, Astier C. 2002. Rubrivivax gelatinosus acsF (previously orf358) codes for a conserved, putative binucleariron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethylester. J. Bacteriol. 184:746-753.
21. Ouchane S, Steunou A-S, Picaud M, Astier C. 2004. Aerobic and anaerobic Mg-protoporphyrin monomethyl ester cyclases in purple bacteria. A strategy adopted to bypass the repressive oxygen control system. J. Biol. Chem. 279:6385-6394.
22. Minamizaki KK, Mizoguchi TT, Goto TT, Tamiaki HH, Fujita YY. 2008. Identification of two homologous genes, chlAI and chlAII, that are differentially involved in isocyclic ring formation of chlorophyll a in the cyanobacterium Synechocystis sp. PCC 6803. J. Biol. Chem. 283:2684-2692.
23. Moseley JL, Page MD, Alder NP, Eriksson M, Quinn J, Soto F, Theg SM, Hippler M, Merchant S. 2002. Reciprocal expression of two candidate di-iron enzymes affecting photosystem I and light-harvesting complex accumulation. Plant Cell 14:673-688.
24. Tottey S, Block MA, Allen M, Westergren T, Albrieux C, Scheller HV, Merchant S, Jensen PE. 2003. Arabidopsis CHL27, located in both envelope and thylakoid membranes, is required for the synthesis of protochlorophyllide. Proc. Natl. Acad. Sci. U. S. A. 100:16119-16124.
25. Tang K-H, Wen J, Li X, Blankenship RE. 2009. Role of the AcsF protein in Chloroflexus aurantiacus. J. Bacteriol. 191:3580-3587.
26. Raimond J, Blankenship RE. 2004. Biosynthetic pathways, gene replacement and the antiquity of life. Geobiology 2:199-220.
27. Boldareva EN, Bryantseva IA, Tsapin A, Nelson K, Sorokin DY, Tourova TP, Boichenko VA, Stadnichuk IN, Gorlenko VM. 2007. The new bacteriochlorophyll a-containing bacterium Roseinatronobacter monicus sp. nov. from the hypersaline soda lake (Mono Lake, California, United States). Microbiology 76:82-92.
28. Boldareva EN, Akimov VN, Boichenko VA, Stadnichuk IN, Moskalenko AA, Makhneva ZK, Gorlenko VM. 2008. Rhodobaca barguzinensis sp. nov., a new alkalophylic purple nonsulfur bacteria isolated from soda lake on the Barguzin valley (Buryat Republic, Russia). Microbiology 77:206-218.
29. Koblížek M, Béjà O, Bidigare RR, Christensen S, Benetiz-Nelson B, Vetriani C, Kolber MK, Falkowski PG, Kolber ZS. 2003. Isolation and characterization of Erythrobacter sp. strains from the upper ocean. Arch. Microbiol. 180:327-338.
30. Oz A, Sabehi G, Koblížek M, Massana R, Béjà O. 2005. Roseobacter-like bacteria in Red and Mediterranean Sea aerobic anoxygenic photosynthetic populations. Appl. Environ. Microbiol. 71:344-353.
31. Rontani J-F, Christodoulous S, Koblížek M. 2005. GC-MS structural characterization of fatty acids from marine aerobic anoxygenic phototrophic bacteria. Lipids 40:97-108.
32. Koblížek M, Mlčoušková J, Kolber Z, Kopecký J. 2010. On the photosynthetic properties of marine bacterium COL2P belonging to Roseobacter clade. Arch. Microbiol. 192:41-49.
33. Zheng Q, Zhang R, Koblížek M, Boldareva EN, Yurkov V, Yan S, Jiao N. 2011. Diverse arrangement of photosynthetic gene clusters in aerobic anoxygenic phototrophic bacteria. PLoS One 6:e25050. doi:10.1371/journal.pone.0025050.
34. Peter E, Salinas A, Wallner T, Jeske D, Dienst D, Wilde A, Grimm B. 2009. Differential requirement of two homologous proteins encoded by sll1214 and sll1874 for the reaction of Mg protoporphyrin monomethylester oxidative cyclase under aerobic and micro-oxic growth conditions. Biochim. Biophys. Acta 1787:1458-1467.
35. Battistuzzi FU, Feijao A, Hedges SB. 2004. A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land. BMC Evol. Biol. 4:44.
36. Johnston DT, Wolfe-Simon F, Pearson A, Knoll AH. 2009. Anoxygenic photosynthesis modulated Proterozoic oxygen and sustained Earth's middle age. Proc. Natl. Acad. Sci. U. S. A. 106:16925-16929.
37. Bollivar DW. 2003. Intermediate steps in chlorophyll biosynthesis, p 49-70. In Kadish K, Smith KM, Guillard R (ed), The porphyrin handbook. Academic Press, San Diego, CA.