-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
34548502272
-
The chymotrypsin-like protease (CTLP) complex of Treponema denticola ATCC 35405 mediates fibrinogen adherence and degradation
-
Bamford, C.V., Fenno, J.C., Jenkinson, H.F. and Dymock, D. (2007) The chymotrypsin-like protease (CTLP) complex of Treponema denticola ATCC 35405 mediates fibrinogen adherence and degradation. Infect Immun 75: 4364-4372.
-
(2007)
Infect Immun
, vol.75
, pp. 4364-4372
-
-
Bamford, C.V.1
Fenno, J.C.2
Jenkinson, H.F.3
Dymock, D.4
-
3
-
-
12844278881
-
Mutagenesis of a novel gene in the prcA-prtP protease locus affects expression of Treponema denticola membrane complexes
-
Bian, X.-L., Wang, H.-T., Ning, Y., Lee, S.Y. and Fenno, J.C. (2005) Mutagenesis of a novel gene in the prcA-prtP protease locus affects expression of Treponema denticola membrane complexes. Infect Immun 73: 1252-1255.
-
(2005)
Infect Immun
, vol.73
, pp. 1252-1255
-
-
Bian, X.-L.1
Wang, H.-T.2
Ning, Y.3
Lee, S.Y.4
Fenno, J.C.5
-
4
-
-
0033119399
-
Errors in genome annotation
-
Brenner, S.E. (1999) Errors in genome annotation. Trends Genet 15: 132-133.
-
(1999)
Trends Genet
, vol.15
, pp. 132-133
-
-
Brenner, S.E.1
-
5
-
-
84894884668
-
Recognition of Treponema denticola outer membrane proteins by human antibodies
-
Capone, R., Wang, H.-T., Ning, Y., Sweier, D.G., Lopatin, D.E. and Fenno, J.C. (2005) Recognition of Treponema denticola outer membrane proteins by human antibodies. J Dent Res 84(Spec Iss A): 2841.
-
(2005)
J Dent Res
, vol.84
, Issue.SPEC ISS A
, pp. 2841
-
-
Capone, R.1
Wang, H.-T.2
Ning, Y.3
Sweier, D.G.4
Lopatin, D.E.5
Fenno, J.C.6
-
6
-
-
0027416360
-
Treponema denticola (ex Brumpt 1925) sp. nov., nom. rev., and identification of new spirochete isolates from periodontal pockets
-
Chan, E.C., Siboo, R., Keng, T. et al. (1993) Treponema denticola (ex Brumpt 1925) sp. nov., nom. rev., and identification of new spirochete isolates from periodontal pockets. Int J Syst Bacteriol 43: 196-203.
-
(1993)
Int J Syst Bacteriol
, vol.43
, pp. 196-203
-
-
Chan, E.C.1
Siboo, R.2
Keng, T.3
-
7
-
-
0031543454
-
An inexpensive solid medium for obtaining colony-forming units of oral spirochetes
-
Chan, E.C.S., DeCiccio, A., McLaughlin, R., Klitorinos, A. and Siboo, R. (1997) An inexpensive solid medium for obtaining colony-forming units of oral spirochetes. Oral Microbiol Immunol 12: 372-376.
-
(1997)
Oral Microbiol Immunol
, vol.12
, pp. 372-376
-
-
Chan, E.C.S.1
DeCiccio, A.2
McLaughlin, R.3
Klitorinos, A.4
Siboo, R.5
-
8
-
-
0142195829
-
Role of dentilisin in Treponema denticola epithelial cell layer penetration
-
Chi, B., Qi, M. and Kuramitsu, H.K. (2003) Role of dentilisin in Treponema denticola epithelial cell layer penetration. Res Microbiol 154: 637-643.
-
(2003)
Res Microbiol
, vol.154
, pp. 637-643
-
-
Chi, B.1
Qi, M.2
Kuramitsu, H.K.3
-
9
-
-
0344393469
-
Two paralogous families of a two-gene subtilisin operon are widely distributed in oral treponemes
-
Correia, F.F., Plummer, A.R., Ellen, R.P. et al. (2003) Two paralogous families of a two-gene subtilisin operon are widely distributed in oral treponemes. J Bacteriol 185: 6860-6869.
-
(2003)
J Bacteriol
, vol.185
, pp. 6860-6869
-
-
Correia, F.F.1
Plummer, A.R.2
Ellen, R.P.3
-
10
-
-
0024204047
-
Selective release of the Treponema pallidum outer membrane and associated polypeptides with Triton X-114
-
Cunningham, T.M., Walker, E.M., Miller, J.N. and Lovett, M.A. (1988) Selective release of the Treponema pallidum outer membrane and associated polypeptides with Triton X-114. J Bacteriol 170: 5789-5796.
-
(1988)
J Bacteriol
, vol.170
, pp. 5789-5796
-
-
Cunningham, T.M.1
Walker, E.M.2
Miller, J.N.3
Lovett, M.A.4
-
11
-
-
77957357555
-
The human oral microbiome
-
Dewhirst, F.E., Chen, T., Izard, J. et al. (2010) The human oral microbiome. J Bacteriol 192: 5002-5017.
-
(2010)
J Bacteriol
, vol.192
, pp. 5002-5017
-
-
Dewhirst, F.E.1
Chen, T.2
Izard, J.3
-
12
-
-
0033764688
-
Insertional inactivation of the prtP gene of Treponema denticola confirms dentilisin's disruption of epithelial junctions
-
Ellen, R.P., Ko, K.S., Lo, C.M., Grove, D.A. and Ishihara, K. (2000) Insertional inactivation of the prtP gene of Treponema denticola confirms dentilisin's disruption of epithelial junctions. J Mol Microbiol Biotechnol 2: 581-586.
-
(2000)
J Mol Microbiol Biotechnol
, vol.2
, pp. 581-586
-
-
Ellen, R.P.1
Ko, K.S.2
Lo, C.M.3
Grove, D.A.4
Ishihara, K.5
-
13
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP and related tools
-
Emanuelsson, O., Brunak, S., von Heijne, G. and Nielsen, H. (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2: 953-971.
-
(2007)
Nat Protoc
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
14
-
-
84864812761
-
Treponema denticola interactions with host proteins
-
Fenno, J.C. (2012) Treponema denticola interactions with host proteins. J Oral Microbiol 4: 9929.
-
(2012)
J Oral Microbiol
, vol.4
, pp. 9929
-
-
Fenno, J.C.1
-
15
-
-
0029863955
-
Sequence analysis, expression and binding activity of recombinant major outer sheath protein (Msp) of Treponema denticola
-
Fenno, J.C., Müller, K.-H. and McBride, B.C. (1996) Sequence analysis, expression and binding activity of recombinant major outer sheath protein (Msp) of Treponema denticola. J Bacteriol 178: 2489-2497.
-
(1996)
J Bacteriol
, vol.178
, pp. 2489-2497
-
-
Fenno, J.C.1
Müller, K.-H.2
McBride, B.C.3
-
16
-
-
0031054308
-
Conservation of msp, the gene encoding the major outer membrane protein of oral Treponema spp
-
Fenno, J.C., Wong, G.W.K., Hannam, P.M., Müller, K.-H., Leung, W.K. and McBride, B.C. (1997) Conservation of msp, the gene encoding the major outer membrane protein of oral Treponema spp. J Bacteriol 179: 1082-1089.
-
(1997)
J Bacteriol
, vol.179
, pp. 1082-1089
-
-
Fenno, J.C.1
Wong, G.W.K.2
Hannam, P.M.3
Müller, K.-H.4
Leung, W.K.5
McBride, B.C.6
-
17
-
-
0031900968
-
Cytopathic effects of the major surface protein (Msp) and the chymotrypsinlike protease (CTLP) of Treponema denticola
-
Fenno, J.C., Hannam, P.M., Leung, W.K., Tamura, M., Uitto, V.-J. and McBride, B.C. (1998a) Cytopathic effects of the major surface protein (Msp) and the chymotrypsinlike protease (CTLP) of Treponema denticola. Infect Immun 66: 1869-1877.
-
(1998)
Infect Immun
, vol.66
, pp. 1869-1877
-
-
Fenno, J.C.1
Hannam, P.M.2
Leung, W.K.3
Tamura, M.4
Uitto, V.-J.5
McBride, B.C.6
-
18
-
-
0032526403
-
Mutagenesis of outer membrane virulence determinants of the oral spirochete Treponema denticola
-
Fenno, J.C., Wong, G.W.K., Hannam, P.M. and McBride, B.C. (1998b) Mutagenesis of outer membrane virulence determinants of the oral spirochete Treponema denticola. FEMS Microbiol Lett 163: 209-215.
-
(1998)
FEMS Microbiol Lett
, vol.163
, pp. 209-215
-
-
Fenno, J.C.1
Wong, G.W.K.2
Hannam, P.M.3
McBride, B.C.4
-
19
-
-
84894898238
-
Treponema msp's from subgingival plaque and cultivated strains
-
Fenno, J.C., Lee, S.Y., Bayer, C.H. and Ning, Y. (2001) Treponema msp's from subgingival plaque and cultivated strains. J Dent Res 80: S53.
-
(2001)
J Dent Res
, vol.80
-
-
Fenno, J.C.1
Lee, S.Y.2
Bayer, C.H.3
Ning, Y.4
-
20
-
-
77954382305
-
Treponema denticola PrcB is required for expression and activity of the PrcA-PrtP (dentilisin) complex
-
Godovikova, V., Wang, H.T., Goetting-Minesky, M.P. et al. (2010) Treponema denticola PrcB is required for expression and activity of the PrcA-PrtP (dentilisin) complex. J Bacteriol 192: 3337-3344.
-
(2010)
J Bacteriol
, vol.192
, pp. 3337-3344
-
-
Godovikova, V.1
Wang, H.T.2
Goetting-Minesky, M.P.3
-
21
-
-
84855723374
-
Composition and localization of Treponema denticola outer membrane complexes
-
Godovikova, V., Goetting-Minesky, M.P. and Fenno, J.C. (2011) Composition and localization of Treponema denticola outer membrane complexes. Infect Immun 79: 4868-4875.
-
(2011)
Infect Immun
, vol.79
, pp. 4868-4875
-
-
Godovikova, V.1
Goetting-Minesky, M.P.2
Fenno, J.C.3
-
22
-
-
0026069890
-
Sulfhydryl-dependent attachment of Treponema denticola to laminin and other proteins
-
Haapasalo, M., Singh, U., McBride, B.C. and Uitto, V.-J. (1991) Sulfhydryl-dependent attachment of Treponema denticola to laminin and other proteins. Infect Immun 59: 4230-4237.
-
(1991)
Infect Immun
, vol.59
, pp. 4230-4237
-
-
Haapasalo, M.1
Singh, U.2
McBride, B.C.3
Uitto, V.-J.4
-
23
-
-
84862286169
-
A framework for human microbiome research
-
Human Microbiome Project Consortium
-
Human Microbiome Project Consortium (2012) A framework for human microbiome research. Nature 486: 215-221.
-
(2012)
Nature
, vol.486
, pp. 215-221
-
-
-
24
-
-
0029833178
-
Characterization of the Treponema denticola prtP gene encoding a prolyl-phenylalanine-specific protease (dentilisin)
-
Ishihara, K., Miura, T., Kuramitsu, H.K. and Okuda, K. (1996) Characterization of the Treponema denticola prtP gene encoding a prolyl-phenylalanine-specific protease (dentilisin). Infect Immun 64: 5178-5186.
-
(1996)
Infect Immun
, vol.64
, pp. 5178-5186
-
-
Ishihara, K.1
Miura, T.2
Kuramitsu, H.K.3
Okuda, K.4
-
25
-
-
0031855734
-
Dentilisin activity affects the organization of the outer sheath of Treponema denticola
-
Ishihara, K., Kuramitsu, H.K., Miura, T. and Okuda, K. (1998) Dentilisin activity affects the organization of the outer sheath of Treponema denticola. J Bacteriol 180: 3837-3844.
-
(1998)
J Bacteriol
, vol.180
, pp. 3837-3844
-
-
Ishihara, K.1
Kuramitsu, H.K.2
Miura, T.3
Okuda, K.4
-
26
-
-
0018702239
-
Detection of oral anaerobic spirochetes in dental plaque by the indirect fluorescent-antibody technique
-
Jacob, E., Allen, A.L. and Nauman, R.K. (1979) Detection of oral anaerobic spirochetes in dental plaque by the indirect fluorescent-antibody technique. J Clin Microbiol 10: 934-936.
-
(1979)
J Clin Microbiol
, vol.10
, pp. 934-936
-
-
Jacob, E.1
Allen, A.L.2
Nauman, R.K.3
-
27
-
-
0041341888
-
Prediction of lipoprotein signal peptides in Gram-negative bacteria
-
Juncker, A.S., Willenbrock, H., Von Heijne, G., Brunak, S., Nielsen, H. and Krogh, A. (2003) Prediction of lipoprotein signal peptides in Gram-negative bacteria. Protein Sci 12: 1652-1662.
-
(2003)
Protein Sci
, vol.12
, pp. 1652-1662
-
-
Juncker, A.S.1
Willenbrock, H.2
Von Heijne, G.3
Brunak, S.4
Nielsen, H.5
Krogh, A.6
-
28
-
-
0036302650
-
Cleavage of Treponema denticola PrcA polypeptide to yield protease complex-associated proteins PrcA1 and PrcA2 is dependent on PrtP
-
Lee, S.Y., Bian, X.L., Wong, G.W., Hannam, P.M., McBride, B.C. and Fenno, J.C. (2002) Cleavage of Treponema denticola PrcA polypeptide to yield protease complex-associated proteins PrcA1 and PrcA2 is dependent on PrtP. J Bacteriol 184: 3864-3870.
-
(2002)
J Bacteriol
, vol.184
, pp. 3864-3870
-
-
Lee, S.Y.1
Bian, X.L.2
Wong, G.W.3
Hannam, P.M.4
McBride, B.C.5
Fenno, J.C.6
-
29
-
-
0030001214
-
Gene inactivation in the oral spirochete Treponema denticola: construction of an flgE mutant
-
Li, H., Ruby, J., Charon, N. and Kuramitsu, H. (1996) Gene inactivation in the oral spirochete Treponema denticola: construction of an flgE mutant. J Bacteriol 178: 3664-3667.
-
(1996)
J Bacteriol
, vol.178
, pp. 3664-3667
-
-
Li, H.1
Ruby, J.2
Charon, N.3
Kuramitsu, H.4
-
30
-
-
0029162741
-
Role of the chymotrypsin-like membrane-associated proteinase from Treponema denticola ATCC 35405 in inactivation of bioactive peptides
-
Mäkinen, P.L., Mäkinen, K.K. and Syed, S.A. (1995) Role of the chymotrypsin-like membrane-associated proteinase from Treponema denticola ATCC 35405 in inactivation of bioactive peptides. Infect Immun 63: 3567-3575.
-
(1995)
Infect Immun
, vol.63
, pp. 3567-3575
-
-
Mäkinen, P.L.1
Mäkinen, K.K.2
Syed, S.A.3
-
31
-
-
63149173182
-
Analysis of a unique interaction between the complement regulatory protein factor H and the periodontal pathogen Treponema denticola
-
McDowell, J.V., Huang, B., Fenno, J.C. and Marconi, R.T. (2009) Analysis of a unique interaction between the complement regulatory protein factor H and the periodontal pathogen Treponema denticola. Infect Immun 77: 1417-1425.
-
(2009)
Infect Immun
, vol.77
, pp. 1417-1425
-
-
McDowell, J.V.1
Huang, B.2
Fenno, J.C.3
Marconi, R.T.4
-
32
-
-
79251519933
-
Treponema denticola chymotrypsin-like protease (dentilisin) induces MMP-2-dependent fibronectin fragmentation in periodontal ligament cells
-
Miao, D., Fenno, J.C., Timm, J.C., Joo, N.E. and Kapila, Y.L. (2011) Treponema denticola chymotrypsin-like protease (dentilisin) induces MMP-2-dependent fibronectin fragmentation in periodontal ligament cells. Infect Immun 79: 806-811.
-
(2011)
Infect Immun
, vol.79
, pp. 806-811
-
-
Miao, D.1
Fenno, J.C.2
Timm, J.C.3
Joo, N.E.4
Kapila, Y.L.5
-
33
-
-
0025933503
-
Expert system for predicting protein localization sites in gram- negative bacteria
-
Nakai, K. and Kanehisa, M. (1991) Expert system for predicting protein localization sites in gram- negative bacteria. Proteins 11: 95-110.
-
(1991)
Proteins
, vol.11
, pp. 95-110
-
-
Nakai, K.1
Kanehisa, M.2
-
34
-
-
0041335299
-
Complete genome sequence of the oral pathogenic pacterium Porphyromonas gingivalis strain W83
-
Nelson, K.E., Fleischmann, R.D., DeBoy, R.T. et al. (2003) Complete genome sequence of the oral pathogenic pacterium Porphyromonas gingivalis strain W83. J Bacteriol 185: 5591-5601.
-
(2003)
J Bacteriol
, vol.185
, pp. 5591-5601
-
-
Nelson, K.E.1
Fleischmann, R.D.2
DeBoy, R.T.3
-
35
-
-
0022477095
-
Purification and characterization of an enzyme produced by Treponema denticola capable of hydrolyzing synthetic trypsin substrates
-
Ohta, K., Mäkinen, K.K. and Loesche, W.J. (1986) Purification and characterization of an enzyme produced by Treponema denticola capable of hydrolyzing synthetic trypsin substrates. Infect Immun 53: 213-220.
-
(1986)
Infect Immun
, vol.53
, pp. 213-220
-
-
Ohta, K.1
Mäkinen, K.K.2
Loesche, W.J.3
-
36
-
-
33644876011
-
ICDS database: interrupted CoDing sequences in prokaryotic genomes
-
Perrodou, E., Deshayes, C., Muller, J. et al. (2006) ICDS database: interrupted CoDing sequences in prokaryotic genomes. Nucleic Acids Res 34: D338-D343.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Perrodou, E.1
Deshayes, C.2
Muller, J.3
-
37
-
-
0023629755
-
Comparison of three dispersion procedures for quantitative recovery of cultivable species of subgingival spirochetes
-
Salvador, S.L., Syed, S.A. and Loesche, W.J. (1987) Comparison of three dispersion procedures for quantitative recovery of cultivable species of subgingival spirochetes. J Clin Microbiol 25: 2230-2232.
-
(1987)
J Clin Microbiol
, vol.25
, pp. 2230-2232
-
-
Salvador, S.L.1
Syed, S.A.2
Loesche, W.J.3
-
38
-
-
0032518163
-
Microbial gene identification using interpolated Markov models
-
Salzberg, S.L., Delcher, A.L., Kasif, S. and White, O. (1998) Microbial gene identification using interpolated Markov models. Nucleic Acids Res 26: 544-548.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 544-548
-
-
Salzberg, S.L.1
Delcher, A.L.2
Kasif, S.3
White, O.4
-
39
-
-
11144358038
-
Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes
-
Seshadri, R., Myers, G.S., Tettelin, H. et al. (2004) Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes. Proc Natl Acad Sci USA 101: 5646-5651.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 5646-5651
-
-
Seshadri, R.1
Myers, G.S.2
Tettelin, H.3
-
40
-
-
30744477217
-
Lipoprotein computational prediction in spirochaetal genomes
-
Setubal, J.C., Reis, M., Matsunaga, J. and Haake, D.A. (2006) Lipoprotein computational prediction in spirochaetal genomes. Microbiology 152: 113-121.
-
(2006)
Microbiology
, vol.152
, pp. 113-121
-
-
Setubal, J.C.1
Reis, M.2
Matsunaga, J.3
Haake, D.A.4
-
41
-
-
17144450611
-
Construction of long DNA molecules using long PCR-based fusion of several fragments simultaneously
-
Shevchuk, N.A., Bryksin, A.V., Nusinovich, Y.A., Cabello, F.C., Sutherland, M. and Ladisch, S. (2004) Construction of long DNA molecules using long PCR-based fusion of several fragments simultaneously. Nucleic Acids Res 32: e19.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Shevchuk, N.A.1
Bryksin, A.V.2
Nusinovich, Y.A.3
Cabello, F.C.4
Sutherland, M.5
Ladisch, S.6
-
42
-
-
67650657332
-
Functional annotation of hypothetical proteins - a review
-
Sivashankari, S. and Shanmughavel, P. (2006) Functional annotation of hypothetical proteins - a review. Bioinformation 1: 335-338.
-
(2006)
Bioinformation
, vol.1
, pp. 335-338
-
-
Sivashankari, S.1
Shanmughavel, P.2
-
43
-
-
0023791265
-
Isolation of a chymotrypsinlike enzyme from Treponema denticola
-
Uitto, V.-J., Grenier, D., Chan, E.C. and McBride, B.C. (1988) Isolation of a chymotrypsinlike enzyme from Treponema denticola. Infect Immun 56: 2717-2722.
-
(1988)
Infect Immun
, vol.56
, pp. 2717-2722
-
-
Uitto, V.-J.1
Grenier, D.2
Chan, E.C.3
McBride, B.C.4
-
44
-
-
0029112596
-
Cytopathic effects of Treponema denticola chymotrypsin-like proteinase on migrating and stratified epithelial cells
-
Uitto, V.-J., Pan, Y.M., Leung, W.K. et al. (1995) Cytopathic effects of Treponema denticola chymotrypsin-like proteinase on migrating and stratified epithelial cells. Infect Immun 63: 3401-3410.
-
(1995)
Infect Immun
, vol.63
, pp. 3401-3410
-
-
Uitto, V.-J.1
Pan, Y.M.2
Leung, W.K.3
-
45
-
-
0021943518
-
Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors
-
Yanisch-Perron, C., Vieira, J. and Messing, J. (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33: 103-119.
-
(1985)
Gene
, vol.33
, pp. 103-119
-
-
Yanisch-Perron, C.1
Vieira, J.2
Messing, J.3
|