Panmictic structure of the cryptosporidium parvum population in irish calves: Influence of prevalence and host movement

Applied and Environmental Microbiology

Volumn 79, Issue 8, 2013, Pages 2534-2541

  de Waele, Valérie ^a,b,c   Van den Broeck, Frederik ^c,d   Huyse, Tine ^c,d   McGrath, Guy ^b   Higgins, Isabella ^b   Speybroeck, Niko ^e   Berzano, Marco ^a   Raleigh, Pat ^a   Mulcahy, Grace M ^b   Murphya, Thomas M ^a  

^a CENTRAL VETERINARY RESEARCH LABORATORY   (Ireland)

^b UNIVERSITY COLLEGE DUBLIN   (Ireland)

^c INSTITUTE OF TROPICAL MEDICINE   (Belgium)

^d UNIVERSITY OF LEUVEN   (Belgium)

^e UNIVERSITÉ CATHOLIQUE DE LOUVAIN   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

BIO-SECURITY; CRYPTOSPORIDIOSIS; CRYPTOSPORIDIUM PARVUM; GLYCOPROTEIN GENES; LOCAL VARIATIONS; PARASITE; RANDOM MATING; TRANSMISSION DYNAMICS;

BIOTECHNOLOGY;

MICROBIOLOGY;

GLYCOPROTEIN; PROTOZOAL DNA; PROTOZOAL PROTEIN;

CATTLE; DISEASE TRANSMISSION; GENETIC MARKER; GENETIC VARIATION; HOST; PARASITIC DISEASE; POPULATION STRUCTURE; POPULATION VIABILITY ANALYSIS; PROTOZOAN; SUBPOPULATION;

ANIMAL; ANIMAL DISEASE; ARTICLE; CATTLE; CATTLE DISEASE; CHEMISTRY; CLASSIFICATION; CRYPTOSPORIDIOSIS; CRYPTOSPORIDIUM PARVUM; DISEASE TRANSMISSION; DNA SEQUENCE; FECES; GENETICS; IRELAND; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; MOLECULAR TYPING; NUCLEOTIDE SEQUENCE; PARASITOLOGY; PHYSIOLOGY; PREVALENCE;

ANIMALS; CATTLE; CATTLE DISEASES; CRYPTOSPORIDIOSIS; CRYPTOSPORIDIUM PARVUM; DNA, PROTOZOAN; FECES; GLYCOPROTEINS; IRELAND; MOLECULAR SEQUENCE DATA; MOLECULAR TYPING; PREVALENCE; PROTOZOAN PROTEINS; SEQUENCE ANALYSIS, DNA;

IRELAND;

BOS; BOVINAE; CRYPTOSPORIDIUM PARVUM;

EID: 84876175696     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.03613-12     Document Type: Article

References (43)

1. Santin M, Trout JM. 2008. Livestock, p 451-483. In Fayer R, Xiao L (ed), Cryptosporidium and cryptosporidiosis. CRC Press, Inc., Boca Raton, FL.
2. Chalmers RM, Giles M. 2010. Zoonotic cryptosporidiosis in the UK-challenges for control. J. Appl. Microbiol. 109:1487-1497.
3. Agri-Food and Biosciences Institute Department of Agriculture Fisheries and Food. 2012. All-island animal disease surveillance report 2011. A joint AFBI/DAFF Veterinary Laboratories publication. Agri-Food and Biosciences Institute Department of Agriculture Fisheries and Food, Dublin, Ireland. http://www.agriculture.gov.ie/media/migration/animalhealthwelfare/veterinary/veterinaryresearchlaboratoryservice/2011%20AFBI&DAFM%20All-Island%20Surveillance%20Report.pdf. Accessed September 2012.
4. Nydam DV, Wade SE, Schaaf SL, Mohammed HO. 2001. Number of Cryptosporidium parvum oocysts or Giardia spp cysts shed by dairy calves after natural infection. Am. J. Vet. Res. 62:1612-1615.
5. Zintl A, Ezzaty-Mirashemi M, Chalmers RM, Elwin K, Mulcahy G, Lucy FE, De Waal T. 2011. Longitudinal and spatial distribution of GP60 subtypes in human cryptosporidiosis cases in Ireland. Epidemiol. Infect. 139:1945-1955.
6. McDonald S, Berzano M, Ziegler P, Murphy TM, Holden NM. 2011. Quantitative risk assessment of surface water contamination with Cryptosporidium sp. oocysts: a case study of three agricultural catchments. Hum. Ecol. Risk Assess. 17:813-825.
7. Betancourt WQ, Rose JB. 2004. Drinking water treatment processes for removal of Cryptosporidium and Giardia. Vet. Parasitol. 126:219-234.
8. Xiao L. 2010. Molecular epidemiology of cryptosporidiosis: an update. Exp. Parasitol. 124:80-89.
9. Thompson HP, Dooley JSG, Kenny J, McCoy M, Lowery CJ, Moore JE, Xiao L. 2007. Genotypes and subtypes of Cryptosporidium spp. in neonatal calves in Northern Ireland. Parasitol. Res. 100:619-624.
10. De Waele V, Speybroeck N, Berkvens D, Mulcahy G, Murphy TM. 2010. Control of cryptosporidiosis in neonatal calves: use of halofuginone lactate in two different calf rearing systems. Prev. Vet. Med. 96:143-151.
11. Widmer G, Sullivan S. 2012. Genomics and population biology of Cryptosporidium species. Parasite Immunol. 34:61-71.
12. Morrison LJ, Mallon ME, Smith HV, MacLeod A, Xiao L, Tait A. 2008. The population structure of the Cryptosporidium parvum population in Scotland: a complex picture. Infect. Genet. Evol. 8:121-129.
13. Drumo R, Widmer G, Morrison LJ, Tait A, Grelloni V, D'Avino N, Pozio E, Caccio SM. 2012. Evidence of host-associated populations of Cryptosporidium parvum in Italy. Appl. Environ. Microbiol. 78:3523-3529.
14. Xiao L, Feng Y. 2008. Zoonotic cryptosporidiosis. FEMS Immunol. Med. Microbiol. 52:309-323.
15. Xiao L, Bern C, Limor J, Sulaiman I, Roberts J, Checkley W, Cabrera L, Gilman RH, Lal AA. 2001. Identification of 5 types of Cryptosporidium parasites in children in Lima, Peru. J. Infect. Dis. 183:492-497.
16. Feng Y, Ortega Y, He G, Das P, Xu M, Zhang X, Fayer R, Gatei W, Cama V, Xiao L. 2007. Wide geographic distribution of Cryptosporidium bovis and the deer-like genotype in bovines. Vet. Parasitol. 144:1-9.
17. Alves M, Xiao L, Sulaiman I, Lal AA, Matos O, Antunes F. 2003. Subgenotype analysis of Cryptosporidium isolates from humans, cattle, and zoo ruminants in Portugal. J. Clin. Microbiol. 41:2744-2747.
18. Sulaiman IM, Hira PR, Zhou L, Al-Ali FM, Al-Shelahi FA, Shweiki HM, Iqbal J, Khalid N, Xiao L. 2005. Unique endemicity of cryptosporidiosis in children in Kuwait. J. Clin. Microbiol. 43:2805-2809.
19. Mallon ME, MacLeod A, Wastling JM, Smith H, Tait A. 2003. Multilocus genotyping of Cryptosporidium parvum type 2: population genetics and sub-structuring. Infect. Genet. Evol. 3:207-218.
20. Dohoo I, Martin W, Stryhn H. 2003. Logistic regression with random effects, p 500-504. In Dohoo I, Martin W, Stryhn H (ed), Veterinary epidemiologic research. AVC Inc., Charlottetown, Prince Edward Island, Canada.
21. Frankena K, Somers JGCJ, Schouten WGP, van Stek JV, Metz JHM, Stassen EN, Graat EAM. 2009. The effect of digital lesions and floor type on the locomotion score in Dutch dairy cows. Prev. Vet. Med. 88:150-157.
22. Kulldorff M. 1997. A spatial scan statistic. Commun. Stat. Theory Methods 26:1481-1496.
23. Olea-Popelka FJ, Flynn O, Costello E, McGrath G, Collins JD, O'Keeffe J, Kelton DF, Berke O, Martin SW. 2005. Spatial relationship between Mycobacterium bovis strains in cattle and badgers in four areas in Ireland. Prev. Vet. Med. 71:57-70.
24. Smith JM, Smith NH, O'Rourke M, Spratt BG. 1993. How clonal are bacteria? Proc. Natl. Acad. Sci. U. S. A. 90:4384-4388.
25. Haubold B, Hudson RR. 2000. LIAN 3.0: detecting linkage disequilibrium in multilocus data. Bioinformatics 16:847-848.
26. Feil EJ, Li BC, Aanensen DM, Hanage WP, Spratt BG. 2004. eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J. Bacteriol. 186:1518-1530.
27. Hennig C, Hausdorf B. 2004. Distance-based parametric bootstrap tests for clustering of species ranges. Comput. Stat. Data Anal. 45:875-896.
28. Weir BS, Cockerham CC. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370.
29. Jombart T, Devillard S, Balloux F. 2010. Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC Genet. 11:94. doi:10.1186/1471-2156-11-94.
30. Herges GR, Widmer G, Clark ME, Khan E, Giddings CW, Brewer M, McEvoy J. 2012. Evidence that Cryptosporidium parvum populations are panmictic and unstructured in the Upper Midwest United States. Appl. Environ. Microbiol. 78:8096-8101.
31. Tanriverdi S, Grinberg A, Chalmers RM, Hunter PR, Petrovic Z, Akiyoshi DE, London E, Zhang L, Tzipori S, Tumwine JK, Widmer G. 2008. Inferences about the global population structures of Cryptosporidium parvum and Cryptosporidium hominis. Appl. Environ. Microbiol. 74:7227-7234.
32. Quilez J, Vergara-Castiblanco C, Monteagudo L, Del Cacho E, Sanchez-Acedo C. 2011. Multilocus fragment typing and genetic structure of Cryptosporidium parvum isolates from diarrheic preweaned calves in Spain. Appl. Environ. Microbiol. 77:7779-7786.
33. Berrian AM, O'Keeffe JO, White PW, Norris J, Litt J, More SJ, Olea-Popelka FJ. 2012. Risk of bovine tuberculosis for cattle sold out from herds during 2005 in Ireland. Vet. Rec. 170:620.
34. Ashe S, More S, O'Keeffe J, White P, McGrath G, Aznar I. 2009. Survival and dispersal of a defined cohort of Irish cattle. Irish Vet. J. 62:44-49.
35. White P, Frankena K, O'Keeffe J, More SJ, Martin SW. 2010. Predictors of the first between-herd animal movement for cattle born in 2002 in Ireland. Prev. Vet. Med. 97:264-269.
36. Santin M, Trout JM, Fayer R. 2008. Alongitudinal study of cryptosporidiosis in dairy cattle from birth to two years of age. Vet. Parasitol. 155:15-23.
37. De Waele V, Berzano M, Berkvens D, Speybroeck N, Lowery C, Mulcahy GM, Murphy TM. 2011. Age-stratified Bayesian analysis to estimate sensitivity and specificity of four diagnostic tests for detection of Cryptosporidium oocysts in neonatal calves. J. Clin. Microbiol. 49:76-84.
38. Anderson TJ, Haubold B, Williams JT, Estrada-Franco JG, Richardson L, Mollinedo R, Bockarie M, Mokili J, Mharakurwa S, French N, Whitworth J, Velez ID, Brockman AH, Nosten F, Ferreira MU, Day KP. 2000. Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum. Mol. Biol. Evol. 17:1467-1482.
39. Enemark HL, Ahrens P, Juel CD, Petersen E, Petersen RF, Andersen JS, Lind P, Thamsborg SM. 2002. Molecular characterization of Danish Cryptosporidium parvum isolates. Parasitology 125:331-341.
40. Brook EJ, Anthony Hart C, French NP, Christley RM. 2009. Molecular epidemiology of Cryptosporidium subtypes in cattle in England. Vet. J. 179:378-382.
41. Tanriverdi S, Markovics A, Arslan MO, Itik A, Shkap V, Widmer G. 2006. Emergence of distinct genotypes of Cryptosporidium parvum in structured host populations. Appl. Environ. Microbiol. 72:2507-2513.
42. Glaberman S, Moore JE, Lowery CJ, Chalmers RM, Sulaiman I, Elwin K, Rooney PJ, Millar BC, Dooley JS, Lal AA, Xiao L. 2002. Three drinking-water-associated cryptosporidiosis outbreaks, Northern Ireland. Emerg. Infect. Dis. 8:631-633.
43. Sturdee AP, Bodley-Tickell AT, Archer A, Chalmers RM. 2003. Longterm study of Cryptosporidium prevalence on a lowland farm in the United Kingdom. Vet. Parasitol. 116:97-113.