Inferences about the global population structures of Cryptosporidium parvum and Cryptosporidium hominis

Applied and Environmental Microbiology

Volumn 74, Issue 23, 2008, Pages 7227-7234

  Tanriverdi, Sultan ^a,g   Grinberg, Alex ^b   Chalmers, Rachel M ^c   Hunter, Paul R ^d   Petrovic, Zorana ^e   Akiyoshi, Donna E ^a   London, Eric ^a   Zhang, Linghui ^a   Tzipori, Saul ^a   Tumwine, James K ^f   Widmer, Giovanni ^a  

^a TUFTS UNIVERSITY   (United States)

^b MASSEY UNIVERSITY   (New Zealand)

^c SINGLETON HOSPITAL   (United Kingdom)

^d UNIVERSITY OF EAST ANGLIA   (United Kingdom)

^e UNIVERSITY OF BELGRADE   (Serbia)

^f MAKERERE UNIVERSITY MEDICAL SCHOOL   (Uganda)

^g IQUUM Inc   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CLUSTER ANALYSIS; NUCLEIC ACIDS; ORGANIC ACIDS; STATISTICAL TESTS;

CRYPTOSPORIDIOSIS; CRYPTOSPORIDIUM HOMINIS; CRYPTOSPORIDIUM PARVUM; GLOBAL POPULATIONS; LINKAGE DISEQUILIBRIUMS; POPULATION GENETIC STRUCTURES; POPULATION STRUCTURES; PROPAGATION PATTERNS; PUBLIC HEALTHS; RELATIVE CONTRIBUTIONS; REPRODUCTIVE STRATEGIES; SUBTYPING;

POPULATION STATISTICS;

CLUSTER ANALYSIS; GENETIC ANALYSIS; GENETIC STRUCTURE; POPULATION STRUCTURE; PROTOZOAN; STATISTICAL ANALYSIS;

ARTICLE; CRYPTOSPORIDIUM HOMINIS; CRYPTOSPORIDIUM PARVUM; GENE LINKAGE DISEQUILIBRIUM; GENE SEGREGATION; GENOTYPE; NONHUMAN; PHYLOGENY; POPULATION GENETICS; POPULATION STRUCTURE; PROTOZOAL GENETICS;

ANIMALS; CLUSTER ANALYSIS; CRYPTOSPORIDIOSIS; CRYPTOSPORIDIUM; DNA FINGERPRINTING; DNA, PROTOZOAN; GENOTYPE; GEOGRAPHY; HUMANS; MICROSATELLITE REPEATS; PHYLOGENY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH;

CRYPTOSPORIDIUM HOMINIS; CRYPTOSPORIDIUM PARVUM; PROTOZOA;

EID: 57149105120     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01576-08     Document Type: Article

References (42)

1. Abrahamsen, M. S., T. J. Templeton, S. Enomoto, J. E. Abrahante, G. Zhu, C. A. Lancto, M. Deng, C. Liu, G. Widmer, S. Tzipori, G. A. Buck, P. Xu, A. T. Bankier, P. H. Dear, B. A. Konfortov, H. F. Spriggs, L. Iyer, V. Anantharaman, L. Aravind, and V. Kapur. 2004. Complete genome sequence of the apicomplexan, Cryptosporidium parvum. Science 304:441-445.
2. Akiyoshi, D. E., X. Feng, M. A. Buckholt, G. Widmer, and S. Tzipori. 2002. Genetic analysis of a Cryptosporidium parvum human genotype 1 isolate passaged through different host species. Infect. Immun. 70:5670-5675.
3. Cacciò, S., W. Homan, R. Camilli, G. Traldi, T. Kortbeek, and E. Pozio. 2000. A microsatellite marker reveals population heterogeneity within human and animal genotypes of Cryptosporidium parvum. Parasitology 120(Pt. 3):237-244.
4. Cacciò, S., F. Spano, and E. Pozio. 2001. Large sequence variation at two microsatellite loci among zoonotic (genotype C) isolates of Cryptosporidium parvum. Int. J. Parasitol. 31:1082-1086.
5. Cevallos, A. M., N. Bhat, R. Verdon, D. H. Hamer, B. Stein, S. Tzipori, M. E. Pereira, G. T. Keusch, and H. D. Ward. 2000. Mediation of Cryptosporidium parvum infection in vitro by mucin-like glycoproteins defined by a neutralizing monoclonal antibody. Infect. Immun. 68:5167-5175.
6. Chalmers, R. M., S. J. Hadfield, C. J. Jackson, K. Elwin, L. Xiao, and P. Hunter. 2008. Geographic linkage and variation in Cryptosporidium hominis. Emerg. Infect. Dis. 14:496-498.
7. Cover, T. M., and P. E. Hart. 1967. Nearest neighbor pattern classification. IEEE Trans. Inf. Theory 13:21-27.
8. Elwin, K., R. M. Chalmers, R. Roberts, E. C. Guy, and D. P. Casemore. 2001. Modification of a rapid method for the identification of gene-specific polymorphisms in Cryptosporidium parvum and its application to clinical and epidemiological investigations. Appl. Environ. Microbiol. 67:5581-5584.
9. Enemark, H. L., P. Ahrens, C. D. Juel, E. Petersen, R. F. Petersen, J. S. Andersen, P. Lind, and S. M. Thamsborg. 2002. Molecular characterization of Danish Cryptosporidium parvum isolates. Parasitology 125:331-341.
10. Feil, E. J., B. C. Li, D. M. Aanensen, W. P. Hanage, and B. G. Spratt. 2004. eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J. Bacteriol. 186:1518-1530.
11. Feil, E. J., and B. G. Spratt. 2001. Recombination and the population structures of bacterial pathogens. Annu. Rev. Microbiol. 55:561-590.
12. Gatei, W., P. Das, P. Dutta, A. Sen, V. Cama, A. A. Lal, and L. Xiao. 2007. Multilocus sequence typing and genetic structure of Cryptosporidium hominis from children in Kolkata, India. Infect. Genet. Evol. 7:197-205.
13. Gatei, W., C. A. Hart, R. H. Gilman, P. Das, V. Cama, and L. Xiao. 2006. Development of a multilocus sequence typing tool for Cryptosporidium hominis. J. Eukaryot. Microbiol. 53(Suppl. 1):S43-S48.
14. Geurden, T., D. Berkvens, C. Martens, S. Casaert, J. Vercruysse, and E. Claerebout. 2007. Molecular epidemiology with subtype analysis of Cryptosporidium in calves in Belgium. Parasitology 134:1981-1987.
15. Gilbert, M., A. Mitchell, D. Bourn, J. Mawdsley, R. Clifton-Hadley, and W. Wint. 2005. Cattle movements and bovine tuberculosis in Great Britain. Nature 435:491-496.
16. Grinberg, A., N. Lopez-Villalobos, W. Pomroy, G. Widmer, H. Smith, and A. Tait. 2008. Host-shaped segregation of the Cryptosporidium parvum multilocus genotype repertoire. Epidemiol. Infect. 136:273-278.
17. Hamming, R. W. 1950. Error detecting and error correcting codes. Bell Syst. Tech. J. 29:147-160.
18. Haubold, B., and R. R. Hudson. 2000. LIAN 3.0: detecting linkage disequilibrium in multilocus data. Bioinformatics 16:847-848.
19. Hughes, J. B., J. J. Hellmann, T. H. Ricketts, and B. J. Bohannan. 2001. Counting the uncountable: statistical approaches to estimating microbial diversity. Appl. Environ. Microbiol. 67:4399-4406.
20. Hunter, P. R., S. J. Hadfield, D. Wilkinson, I. R. Lake, F. C. Harrison, and R. M. Chalmers. 2007. Subtypes of Cryptosporidium parvum in humans and disease risk. Emerg. Infect. Dis. 13:82-88.
21. Hunter, P. R., S. Hughes, S. Woodhouse, Q. Syed, N. Q. Verlander, R. M. Chalmers, K. Morgan, G. Nichols, N. Beeching, and K. Osborn. 2004. Sporadic cryptosporidiosis case-control study with genotyping. Emerg. Infect. Dis. 10:1241-1249.
22. Magurran, A. E. 2004. Measuring biolocial diversity. Blackwell Publishing, Oxford, United Kingdom.
23. Mallon, M., A. MacLeod, J. Wastling, H. Smith, B. Reilly, and A. Tait. 2003. Population structures and the role of genetic exchange in the zoonotic pathogen Cryptosporidium parvum. J. Mol. Evol. 56:407-417.
24. Mallon, M. E., A. MacLeod, J. M. Wastling, H. Smith, and A. Tait. 2003. Multilocus genotyping of Cryptosporidium parvum type 2: population genetics and sub-structuring. Infect. Genet. Evol. 3:207-218.
25. Misic, Z., and N. Abe. 2007. Subtype analysis of Cryptosporidium parvum isolates from calves on farms around Belgrade, Serbia and Montenegro, using the 60 kDa glycoprotein gene sequences. Parasitology 134(Pt. 3):351-358.
26. Morrison, L. J., M. E. Mallon, H. V. Smith, A. Macleod, L. Xiao, and A. Tait. 2008. The population structure of the Cryptosporidium parvum population in Scotland: a complex picture. Infect. Genet. Evol. 8:121-129.
27. Ngouanesavanh, T., K. Guyot, G. Certad, Y. L. Fichoux, C. Chartier, R. I. Verdier, J. C. Cailliez, D. Camus, E. Dei-Cas, and A. L. Banuls. 2006. Cryptosporidium population genetics: evidence of clonality in isolates from France and Haiti. J. Eukaryot. Microbiol. 53:S33-S36.
28. Okhuysen, P. C., C. L. Chappell, J. H. Crabb, C. R. Sterling, and H. L. DuPont. 1999. Virulence of three distinct Cryptosporidium parvum isolates for healthy adults. J. Infect. Dis. 180:1275-1281.
29. Okhuysen, P. C., S. M. Rich, C. L. Chappell, K. A. Grimes, G. Widmer, X. Feng, and S. Tzipori. 2002. Infectivity of a Cryptosporidium parvum isolate of cervine origin for healthy adults and interferon-gamma knockout mice. J. Infect. Dis. 185:1320-1325.
30. Smith, J. M., N. H. Smith, M. O'Rourke, and B. G. Spratt. 1993. How clonal are bacteria? Proc. Natl. Acad. Sci. USA 90:4384-4388.
31. Spano, F., L. Putignani, J. McLauchlin, D. P. Casemore, and A. Crisanti. 1997. PCR-RFLP analysis of the Cryptosporidium oocyst wall protein (COWP) gene discriminates between C. wrairi and C. parvum, and between C. parvum isolates of human and animal origin. FEMS Microbiol. Lett. 150:209-217.
32. Strong, W. B., J. Gut, and R. G. Nelson. 2000. Cloning and sequence analysis of a highly polymorphic Cryptosporidium parvum gene encoding a 60-kilodalton glycoprotein and characterization of its 15- and 45-kilodalton zoite surface antigen products. Infect. Immun. 68:4117-4134.
33. Tanriverdi, S., M. O. Arslan, D. E. Akiyoshi, S. Tzipori, and G. Widmer. 2003. Identification of genotypically mixed Cryptosporidium parvum populations in humans and calves. Mol. Biochem. Parasitol. 130:13-22.
34. Tanriverdi, S., J. C. Blain, B. Deng, M. T. Ferdig, and G. Widmer. 2007. Genetic crosses in the apicomplexan parasite Cryptosporidium parvum define recombination parameters. Mol. Microbiol. 63:1432-1439.
35. Tanriverdi, S., A. Markovics, M. O. Arslan, A. Itik, V. Shkap, and G. Widmer. 2006. Emergence of distinct genotypes of Cryptosporidium parvum in structured host populations. Appl. Environ. Microbiol. 72:2507-2513.
36. Tanriverdi, S., and G. Widmer. 2006. Differential evolution of repetitive sequences in Cryptosporidium parvum and Cryptosporidium hominis. Infect. Genet. Evol. 6:113-122.
37. Tumwine, J. K., A. Kekitiinwa, S. Bakeera-Kitaka, G. Ndeezi, R. Downing, X. Feng, D. E. Akiyoshi, and S. Tzipori. 2005. Cryptosporidiosis and microsporidiosis in Ugandan children with persistent diarrhea with and without concurrent infection with the human immunodeficiency virus. Am. J. Trop. Med. Hyg. 73:921-925.
38. Tumwine, J. K., A. Kekitiinwa, N. Nabukeera, D. E. Akiyoshi, S. M. Rich, G. Widmer, X. Feng, and S. Tzipori. 2003. Cryptosporidium parvum in children with diarrhea in Mulago Hospital, Kampala, Uganda. Am. J. Trop. Med. Hyg. 68:710-715.
39. Turner, K. M., W. P. Hanage, C. Fraser, T. R. Connor, and B. G. Spratt. 2007. Assessing the reliability of eBURST using simulated populations with known ancestry. BMC Microbiol. 7:30.
40. Whittaker, R. H. 1965. Dominance and diversity in land plant communities: numerical relations of species express the importance of competition in community function and evolution. Science 147:250-260.
41. Widmer, G., S. Tzipori, C. J. Fichtenbaum, and J. K. Griffiths. 1998. Genotypic and phenotypic characterization of Cryptosporidium parvum isolates from people with AIDS. J. Infect. Dis. 178:834-840.
42. Xiao, L., R. Fayer, U. Ryan, and S. J. Upton. 2004. Cryptosporidium taxonomy: recent advances and implications for public health. Clin. Microbiol. Rev. 17:72-97.