Molecular typing of human adenoviruses by PCR and sequencing of a partial region of the hexon gene

Archives of Virology

Volumn 151, Issue 8, 2006, Pages 1587-1602

  Lu, X ^a   Erdman, D D ^a  

^a CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEIN; HEXON CAPSID PROTEIN, ADENOVIRUS;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; EVALUATION; GENETICS; HUMAN; HUMAN ADENOVIRUS; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; VIROLOGY; VIRUS INFECTION;

ADENOVIRUS INFECTIONS, HUMAN; ADENOVIRUSES, HUMAN; AMINO ACID SEQUENCE; BASE SEQUENCE; CAPSID PROTEINS; HUMANS; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; VIROLOGY;

HUMAN ADENOVIRUS;

EID: 33746172085     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-005-0722-7     Document Type: Article

References (46)

1. AK Adhikary J Numaga T Kaburaki H Kawashima S Kato M Araie K Miyata H Shimizu F Yagyu E Suzuki H Ushijima 2001 Rapid detection and typing of oculopathogenic Strain of subgenus D adenoviruses by fiber-based PCR and restriction enzyme analysis Invest Opthi Vis Sci 42 2010 2015
2. AK Adhikary T Inada J Numaga E Suzuki H Ushijima U Banik A Mukouyama S Matsuno N Okabe 2004 Characterization of hexon and fiber genes of a novel strain of adenovirus involved in epidemic kerato-conjunctivitis J Clin Pathol 57 95 97
3. T Adrian G Wadell JC Hierholzer R Wigand 1986 DNA restriction analysis of adenovirus prototypes 1 to 41 Arch Virol 91 277 290
4. T Ariga Y Shimada K Ohgami 2004 New genome type of adenovirus serotype 4 caused nosocomial infections associated with epidemic conjunctivitis in Japan J Clin Microbiol 42 3644 3648
5. FK Athappily R Murali JJ Rux Z Cai RM Burnett 1994 The refined crystal structure of hexon, the major coat protein of adenovirus type 2, at 2.9 A resolution J Mol Biol 242 430 455
6. M Benkö B Harrach WC Russell 2000 Adenoviridae. Family Adenoviridae MHV van Regenmortel CM Fauquet DHL Bishop EB Carstens MK Estes SM Lemon J Maniloff MA Mayo DJ McGeoch CR Pringle RB Wickner Virus taxonomy The Seventh Report of the International Committee on Taxonomy of Viruses Academic Press San Diego, CA 227 238
7. DA Benson I Karsch-Mizrachi DJ Lipman J Ostell BA Rapp DL Wheeler 2002 GenBank Nucleic Acids Res 30 17 20
8. DA Blasiole D Metzgar LT Daum MA Ryan J Wu C Wills CT Le NE Freed CJ Hansen GC Gray KL Russell 2004 Molecular analysis of adenovirus isolates from vaccinated and unvaccinated young adults J Clin Microbiol 42 1686 1693
9. MEG Boursnell V Mautner 1981 Recombination in adenovirus: crossover sites in intertypic recombinants are located in regions of homology Virology 112 198 209
10. L Crawford-Miksza DP Schnurr 1996 Analysis of 15 adenovirus hexon proteins reveals the location and structure of seven hypervariable regions containing serotype-specific residues J Virol 70 1836 1844
11. L Crawford-Miksza DP Schnurr 1996 Adenovirus serotype evolution is driven by illegitimate recombination in the hypervariable regions of the hexon protein Virology 224 357 367
12. L Crawford-Miksza RN Nang DP Schnurr 1999 Strain variation in adenovirus serotypes 4 and 7a causing acute respiratory disease J Clin Microbiol 37 1107 1112
13. JC De Jong AG Wermenbol MW Verweij-Uijterwaal KW Slaterus P Wertheim-Van Dillen GJ Van Doornum SH Khoo JC Hierholzer 1996 Adenovirus from AIDS patients, including two new candidate serotypes Ad50 and Ad51 of subgeneus D and B1, respectively Xth International Congress of Virology Jerusalem, Israel 230
14. CA Gaydos JC Gaydos 1995 Adenovirus vaccines in the U.S. military Mil Med 160 300 304
15. WC Gruber DJ Russell C Tibbetts 1993 Fiber gene and genomic origin of human adenovirus type 4 Virology 196 603 611
16. JC Hierholzer PG Bingham 1978 Vero microcultures for adenovirus neutralization tests J Clin Microbiol 7 499 506
17. JC Hierholzer 1995 Adenoviruses EH Lennette DA Lennette ET Lennette Diagnostic procedures for viral, rickettsial, and chlamydial infections 7 American Public Health Association Washington DC 169 188
18. JC Hierholzer MT Suggs 1969 Standardized viral hemagglutination and hemagglutination-inhibition tests. I. Standardization of erythrocyte suspensions Appl Microbiol 18 816 823
19. JC Hierholzer MT Suggs EC Hall 1969 Standardized viral hemagglutination and hemagglutination-inhibition tests. II. Description and statistical evaluation Appl Microbiol 18 824 833
20. JC Hierholzer WC Gamble WR Dowdle 1975 Reference equine antisera to 33 human adenovirus types: homologous and heterologous titers J Clin Microbiol 1 65 74
21. JC Hierholzer A Pumarola 1976 Antigenic characterization of intermediate adenovirus 14-11 strains associated with upper respiratory illness in a military camp Infect Immunol 13 354 359
22. JC Hierholzer R Wigand LJ Anderson T Adrian JW Gold 1988 Adenoviruses from patients with AIDS: a plethora of serotypes and a description of five new s serotypes of subgenus D (types 43-47) J Infect Dis 58 804 813
23. JC Hierholzer YO Stone JR Broderson 1991 Antigenic relationships among the 47 human adenoviruses determined in reference horse antisera Arch Virol 121 179 197
24. AH Kidd M Jonsson D Garwicz AE Kajon AG Wermenbol MW Verweij JC De Jong 1996 Rapid subgenus identification of human adenovirus isolates by a general PCR J Clin Microbiol 34 622 627
25. L Li H Shimizu LT Doan PG Tung S Okitsu O Nishio E Suzuki JK Seo KS Kim WE Muller H Ushijima 2004 Characterization of adenovirus type 41 isolates from children with acute gastroenteritis in Japan, Vietnam, and Korea J Clin Microbiol 42 4032 4039
26. B Lin GJ Vora D Thach 2004 Use of oligonucleotide microarrays for rapid detection and serotyping of acute respiratory disease-associated adenoviruses J Clin Microbiol 42 3232 3239
27. SA Lukashok MS Horwitz 1998 New perspectives in adenoviruses Curr Clin Top Infect Dis 18 286 305
28. F Morfin S Dupuis-Girod S Mundweiler D Falcon D Carrington P Sedlacek M Bierings P Cetkovsky AC Kroes MJ van Tol D Thouvenot 2005 In vitro susceptibility of adenovirus to antiviral drugs is species-dependent Antivir Ther 10 225 229
29. P Pring-Åkerblom T Adrian T Kostler 1997 PCR-based detection and typing of human adenoviruses in clinical samples Res Virol 148 225 231
30. P Pring-Åkerblom T Adrian 1993 The hexon genes of adenoviruses of subgenus C: comparison of the variable regions Res Virol 144 117 127
31. P Pring-Åkerblom T Adrian 1994 Type- and group-specific polymerase chain reaction for adenovirus detection Res Virol 145 25 35
32. P Pring-Åkerblom FE Trijssenaar T Adrian 1995 Sequence characterization and comparison of human adenovirus subgenus B and E hexons Virology 212 232 236
33. C Rocholl K Gerber J Daly AT Pavia CL Byington 2004 Adenoviral infections in children: the impact of rapid diagnosis Pediatrics 113 51 56
34. W Saitoh-Inagawa A Oshima K Aoki 1996 Rapid diagnosis of adenovirus conjunctivitis by PCR and restriction fragment length polymorphism analysis J Clin Microbiol 34 2113 2116
35. H Sarantis G Johnson M Brown M Petric R Tellier 2004 Comprehensive detection and serotypeing of human adenoviruses by PCR and sequencing J Clin Microbiol 42 3063 3069
36. D Schnurr ME Dondero 1993 Two new candidate adenovirus serotypes Intervirology 36 79 83
37. Y Shimada T Ariga T Yoshitsugu K Aoki S Ohno H Ishiko 2004 Molecular diagnosis of human adenoviruses D and E by a phylogeny-based classification method using a partial hexon sequence J Clin Microbiol 42 1577 1584
38. N Singh-Naz WJ Rodriguez AH Kidd CD Brandt 1988 Monoclonal antibody enzyme-linked immunosorbent assay for specific identification and typing of subgroup F adenoviruses J Clin Microbiol 26 297 300
39. MP Simmons H Ochoterena 2000 Gaps as characters in sequence-based phylogenetic analyses Syst Biol 49 369 381
40. Swofford DL (2003) PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods), 4th edn. Sinauer Associates, Sunderland, Massachusetts
41. S Takeuchi N Itoh E Uchio K Aoki S Ohno 1999 Serotyping of adenoviruses on conjunctival scrapings by PCR and sequence analysis J Clin Microbiol 37 1839 1845
42. S Takeuchi N Itoh E Uchio K Tanaka N Kitamura H Kanai K Isobe K Aoki S Ohno 1999 Adenovirus strains of subgenus D associated with nosocomial infection as new etiological agents of epidemic keratoconjunctivitis in Japan J Clin Microbiol 37 3392 3394
43. R Wigand 1987 Pitfalls in the identification of adenoviruses J Virol Methods 16 161 169
44. R Wigand N Sehn JC Hierholzer JC de Jong T Adrian 1985 Immunological and biochemical characterization of human adenoviruses from subgenus B. I. Antigenic relationships Arch Virol 84 63 78
45. SR Wood IR Sharp EO Caul 1997 Rapid detection and serotyping of adenovirus by direct immuno-fluorescence J Med Virol 51 198 201
46. W Xu MM McDonough DD Erdman 2000 Species-specific identification of human adenoviruses by a multiplex polymerase chain reaction assay J Clin Microbiol 38 4114 4120