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Volumn 32, Issue 5, 2013, Pages 623-636

Pollen transcriptome analysis of Solanum tuberosum (2n = 4x = 48), S. demissum (2n = 6x = 72), and their reciprocal F1 hybrids

Author keywords

Allelic variation; Cytoplasm nuclear chromosomal genes interaction; Pollen transcriptome; Reciprocal difference

Indexed keywords

SOLANUM JAMESII; SOLANUM TUBEROSUM;

EID: 84876093993     PISSN: 07217714     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00299-013-1395-4     Document Type: Article
Times cited : (6)

References (58)
  • 1
    • 0345071423 scopus 로고    scopus 로고
    • Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing
    • Adams KL, Cronn R, Percifield R, Wendel JF (2003) Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. Proc Natl Acad Sci USA 100: 4649-4654.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 4649-4654
    • Adams, K.L.1    Cronn, R.2    Percifield, R.3    Wendel, J.F.4
  • 2
    • 0033824259 scopus 로고    scopus 로고
    • Genomic imprinting in plants: observations and evolutionary implications
    • Alleman M, Doctor J (2000) Genomic imprinting in plants: observations and evolutionary implications. Plant Mol Biol 43: 147-161.
    • (2000) Plant Mol Biol , vol.43 , pp. 147-161
    • Alleman, M.1    Doctor, J.2
  • 3
    • 75849117359 scopus 로고    scopus 로고
    • Enriched partial correlations in genome-wide gene expression profiles of hybrids (A. thaliana): a systems biological approach towards the molecular basis of heterosis
    • Andorf S, Selbig J, Altmann T, Poos K, Witucka-Wall H, Repsilber D (2010) Enriched partial correlations in genome-wide gene expression profiles of hybrids (A. thaliana): a systems biological approach towards the molecular basis of heterosis. Theor Appl Genet 120: 249-259.
    • (2010) Theor Appl Genet , vol.120 , pp. 249-259
    • Andorf, S.1    Selbig, J.2    Altmann, T.3    Poos, K.4    Witucka-Wall, H.5    Repsilber, D.6
  • 5
    • 33751258630 scopus 로고    scopus 로고
    • The complete chloroplast genome sequences of Solanum tuberosum and comparative analysis with Solanaceae species identified the presence of a 241-bp deletion in cultivated potato chloroplast DNA sequence
    • Chung HJ, Jung JD, Park HW, Kim JH, Cha HW, Min SR, Jeong WJ, Liu J (2006) The complete chloroplast genome sequences of Solanum tuberosum and comparative analysis with Solanaceae species identified the presence of a 241-bp deletion in cultivated potato chloroplast DNA sequence. Plant Cell Rep 25: 1369-1379.
    • (2006) Plant Cell Rep , vol.25 , pp. 1369-1379
    • Chung, H.J.1    Jung, J.D.2    Park, H.W.3    Kim, J.H.4    Cha, H.W.5    Min, S.R.6    Jeong, W.J.7    Liu, J.8
  • 6
    • 0031282618 scopus 로고    scopus 로고
    • Characterization of Phaseolus vulgaris cDNA clones responsive to water deficit: identification of a novel late embryogenesis abundant-like protein
    • Colmenero-Flores JM, Campos F, Garciarrubio A, Covarrubias AA (1997) Characterization of Phaseolus vulgaris cDNA clones responsive to water deficit: identification of a novel late embryogenesis abundant-like protein. Plant Mol Biol 35: 393-405.
    • (1997) Plant Mol Biol , vol.35 , pp. 393-405
    • Colmenero-Flores, J.M.1    Campos, F.2    Garciarrubio, A.3    Covarrubias, A.A.4
  • 8
    • 77953393143 scopus 로고    scopus 로고
    • Post-transcriptional control of chloroplast gene expression
    • del Campo EM (2009) Post-transcriptional control of chloroplast gene expression. Gene Reg Syst Biol 3: 31-47.
    • (2009) Gene Reg Syst Biol , vol.3 , pp. 31-47
    • del Campo, E.M.1
  • 9
    • 21644453696 scopus 로고    scopus 로고
    • A differential dosage hypothesis for parental effects in seed development
    • Dilkes BP, Comai L (2004) A differential dosage hypothesis for parental effects in seed development. Plant Cell 16: 3174-3180.
    • (2004) Plant Cell , vol.16 , pp. 3174-3180
    • Dilkes, B.P.1    Comai, L.2
  • 10
    • 34547128656 scopus 로고    scopus 로고
    • Mapping of mitochondrial mRNA termini in Arabidopsis thaliana: t-elements contribute to 5′ and 3′ end formation
    • Forner J, Weber B, Thuss S, Wildum S, Binder S (2007) Mapping of mitochondrial mRNA termini in Arabidopsis thaliana: t-elements contribute to 5′ and 3′ end formation. Nucleic Acids Res 35: 3676-3692.
    • (2007) Nucleic Acids Res , vol.35 , pp. 3676-3692
    • Forner, J.1    Weber, B.2    Thuss, S.3    Wildum, S.4    Binder, S.5
  • 12
    • 80051745935 scopus 로고    scopus 로고
    • Genomic analysis of parent-of-origin allelic expression in Arabidopsis thaliana seeds
    • Gehring M, Missirian V, Henikoff S (2011) Genomic analysis of parent-of-origin allelic expression in Arabidopsis thaliana seeds. PLoS ONE 6: e23687.
    • (2011) PLoS ONE , vol.6
    • Gehring, M.1    Missirian, V.2    Henikoff, S.3
  • 14
    • 33747735632 scopus 로고    scopus 로고
    • Genome-wide transcript analysis of maize hybrids: allelic additive gene expression and yield heterosis
    • Guo M, Rupe MA, Yang X, Crasta O, Zinselmeier C, Smith OS, Bowen B (2006) Genome-wide transcript analysis of maize hybrids: allelic additive gene expression and yield heterosis. Theor Appl Genet 113: 831-845.
    • (2006) Theor Appl Genet , vol.113 , pp. 831-845
    • Guo, M.1    Rupe, M.A.2    Yang, X.3    Crasta, O.4    Zinselmeier, C.5    Smith, O.S.6    Bowen, B.7
  • 17
    • 84856860502 scopus 로고    scopus 로고
    • Comprehensive analysis of tobacco pollen transcriptome unveils common pathways in polar cell expansion and underlying heterochronic shift during spermatogenesis
    • Hafidh S, Breznenová K, Růžička P, Feciková J, Čapková V, Honys D (2012) Comprehensive analysis of tobacco pollen transcriptome unveils common pathways in polar cell expansion and underlying heterochronic shift during spermatogenesis. BMC Plant Biol 12: 24.
    • (2012) BMC Plant Biol , vol.12 , pp. 24
    • Hafidh, S.1    Breznenová, K.2    Růžička, P.3    Feciková, J.4    Čapková, V.5    Honys, D.6
  • 19
    • 0038120839 scopus 로고    scopus 로고
    • Comparative analysis of the Arabidopsis pollen transcriptome
    • Honys D, Twell D (2003) Comparative analysis of the Arabidopsis pollen transcriptome. Plant Physiol 132: 640-652.
    • (2003) Plant Physiol , vol.132 , pp. 640-652
    • Honys, D.1    Twell, D.2
  • 20
    • 17844410215 scopus 로고    scopus 로고
    • Transcriptome analysis of haploid male gametophyte development in Arabidopsis
    • Honys D, Twell D (2004) Transcriptome analysis of haploid male gametophyte development in Arabidopsis. Genome Biol 5: R85.
    • (2004) Genome Biol , vol.5
    • Honys, D.1    Twell, D.2
  • 22
    • 0030769859 scopus 로고    scopus 로고
    • Hypermethylated SUPERMAN epigenetic alleles in Arabidopsis
    • Jacobsen SE, Meyerowitz EM (1997) Hypermethylated SUPERMAN epigenetic alleles in Arabidopsis. Science 277: 1100-1103.
    • (1997) Science , vol.277 , pp. 1100-1103
    • Jacobsen, S.E.1    Meyerowitz, E.M.2
  • 23
    • 0035839057 scopus 로고    scopus 로고
    • The role of DNA methylation in mammalian epigenetics
    • Jones PA, Takai D (2001) The role of DNA methylation in mammalian epigenetics. Science 293: 1068-1070.
    • (2001) Science , vol.293 , pp. 1068-1070
    • Jones, P.A.1    Takai, D.2
  • 24
    • 33745668459 scopus 로고    scopus 로고
    • Parent-dependent loss of gene silencing during interspecies hybridization
    • Josefsson C, Dilkes B, Comai L (2006) Parent-dependent loss of gene silencing during interspecies hybridization. Curr Biol 16: 1322-1328.
    • (2006) Curr Biol , vol.16 , pp. 1322-1328
    • Josefsson, C.1    Dilkes, B.2    Comai, L.3
  • 25
    • 1242271304 scopus 로고    scopus 로고
    • Allele-specific gene expression uncovered
    • Knight JC (2004) Allele-specific gene expression uncovered. Trends Genet 20: 113-116.
    • (2004) Trends Genet , vol.20 , pp. 113-116
    • Knight, J.C.1
  • 26
    • 33751516008 scopus 로고    scopus 로고
    • Epigenetic mechanisms governing seed development in plants
    • Köhler C, Makarevich G (2006) Epigenetic mechanisms governing seed development in plants. EMBO Rep 7: 1223-1227.
    • (2006) EMBO Rep , vol.7 , pp. 1223-1227
    • Köhler, C.1    Makarevich, G.2
  • 27
    • 76749163717 scopus 로고    scopus 로고
    • The impact of the triploid block on the origin and evolution of polyploidy plants
    • Köhler C, Scheid OM, Erilova A (2010) The impact of the triploid block on the origin and evolution of polyploidy plants. Trends Genet 26: 142-148.
    • (2010) Trends Genet , vol.26 , pp. 142-148
    • Köhler, C.1    Scheid, O.M.2    Erilova, A.3
  • 28
    • 34248337400 scopus 로고    scopus 로고
    • The TUMOROUS SHOOT DEVELOPMENT2 gene of Arabidopsis encoding a putative methyltransferase is required for cell adhesion and co-ordinated plant development
    • Krupková E, Immerzeel P, Pauly M, Schmülling T (2007) The TUMOROUS SHOOT DEVELOPMENT2 gene of Arabidopsis encoding a putative methyltransferase is required for cell adhesion and co-ordinated plant development. Plant J 50: 735-750.
    • (2007) Plant J , vol.50 , pp. 735-750
    • Krupková, E.1    Immerzeel, P.2    Pauly, M.3    Schmülling, T.4
  • 29
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory- efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory- efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 30
    • 73949153402 scopus 로고    scopus 로고
    • Balance between maternal and paternal alleles sets the timing of resource accumulation in the maize endosperm
    • Li N, Dickinson HG (2010) Balance between maternal and paternal alleles sets the timing of resource accumulation in the maize endosperm. Proc R Soc B 277: 3-10.
    • (2010) Proc R Soc B , vol.277 , pp. 3-10
    • Li, N.1    Dickinson, H.G.2
  • 32
    • 79959818388 scopus 로고    scopus 로고
    • A genome-wide survey of imprinted genes in rice seeds reveals imprinting primarily occurs in the endosperm
    • Luo M, Taylor JM, Spriggs A, Zhang H, Wu X, Russell S, Singh M, Koltunow A (2011) A genome-wide survey of imprinted genes in rice seeds reveals imprinting primarily occurs in the endosperm. PLoS Genet 7: e1002125.
    • (2011) PLoS Genet , vol.7
    • Luo, M.1    Taylor, J.M.2    Spriggs, A.3    Zhang, H.4    Wu, X.5    Russell, S.6    Singh, M.7    Koltunow, A.8
  • 33
    • 0035984262 scopus 로고    scopus 로고
    • Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids
    • Madlung A, Masuelli RW, Watson B, Reynolds SH, Davison J, Comai L (2002) Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids. Plant Physiol 129: 733-746.
    • (2002) Plant Physiol , vol.129 , pp. 733-746
    • Madlung, A.1    Masuelli, R.W.2    Watson, B.3    Reynolds, S.H.4    Davison, J.5    Comai, L.6
  • 35
    • 85023419557 scopus 로고
    • Phylogenetic relationships in the potato and its related species
    • T. Tsuchiya and P. K. Gupta (Eds.), Amsterdam: Elsevier
    • Matsubayashi M (1991) Phylogenetic relationships in the potato and its related species. In: Tsuchiya T, Gupta PK (eds) Chromosome engineering in plants: genetics, breeding, evolution Part B. Elsevier, Amsterdam, pp 93-118.
    • (1991) Chromosome Engineering in Plants: Genetics, Breeding, Evolution Part B , pp. 93-118
    • Matsubayashi, M.1
  • 40
    • 26944493068 scopus 로고    scopus 로고
    • Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation
    • Pina C, Pinto F, Feijó JA, Becker JD (2005) Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation. Plant Physiol 138: 744-756.
    • (2005) Plant Physiol , vol.138 , pp. 744-756
    • Pina, C.1    Pinto, F.2    Feijó, J.A.3    Becker, J.D.4
  • 42
    • 75849147404 scopus 로고    scopus 로고
    • Gene expression analysis at the intersection of ploidy and hybridity in maize
    • Riddle NC, Jiang H, An L, Doerge RW, Birchler JA (2010) Gene expression analysis at the intersection of ploidy and hybridity in maize. Theor Appl Genet 120: 341-353.
    • (2010) Theor Appl Genet , vol.120 , pp. 341-353
    • Riddle, N.C.1    Jiang, H.2    An, L.3    Doerge, R.W.4    Birchler, J.A.5
  • 44
    • 80255122610 scopus 로고    scopus 로고
    • 1 hybrids of Solanum tuberosum × S. demissum
    • 1 hybrids of Solanum tuberosum × S. demissum. Euphytica 182: 219-229.
    • (2011) Euphytica , vol.182 , pp. 219-229
    • Sanetomo, R.1    Hosaka, K.2
  • 47
    • 77955350102 scopus 로고    scopus 로고
    • Transcription profiling of fertilization and early seed development events in a solanaceous species using a 7.7 K cDNA microarray from Solanum chacoense ovules
    • Tebbji F, Nantel A, Matton DP (2010) Transcription profiling of fertilization and early seed development events in a solanaceous species using a 7. 7 K cDNA microarray from Solanum chacoense ovules. BMC Plant Biol 10: 174.
    • (2010) BMC Plant Biol , vol.10 , pp. 174
    • Tebbji, F.1    Nantel, A.2    Matton, D.P.3
  • 48
    • 79960422847 scopus 로고    scopus 로고
    • Genome sequence and analysis of the tuber crop potato
    • The Potato Genome Sequencing Consortium
    • The Potato Genome Sequencing Consortium (2011) Genome sequence and analysis of the tuber crop potato. Nature 475: 189-195.
    • (2011) Nature , vol.475 , pp. 189-195
  • 50
    • 32544437127 scopus 로고    scopus 로고
    • Genetic analysis of variation in gene expression in Arabidopsis thaliana
    • Vuylsteke M, van Eeuwijk F, Hummelen PV, Kuiper M, Zabeau M (2005) Genetic analysis of variation in gene expression in Arabidopsis thaliana. Genetics 171: 1267-1275.
    • (2005) Genetics , vol.171 , pp. 1267-1275
    • Vuylsteke, M.1    van Eeuwijk, F.2    Hummelen, P.V.3    Kuiper, M.4    Zabeau, M.5
  • 51
    • 67649884531 scopus 로고    scopus 로고
    • Dosage-dependent deregulation of an AGAMOUS-LIKE gene cluster contributes to interspecific incompatibility
    • Walia H, Josefsson C, Dilkes B, Kirkbride R, Harada J, Comai L (2009) Dosage-dependent deregulation of an AGAMOUS-LIKE gene cluster contributes to interspecific incompatibility. Curr Biol 19: 1128-1132.
    • (2009) Curr Biol , vol.19 , pp. 1128-1132
    • Walia, H.1    Josefsson, C.2    Dilkes, B.3    Kirkbride, R.4    Harada, J.5    Comai, L.6
  • 52
    • 57749119299 scopus 로고    scopus 로고
    • Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
    • Wang Y, Zhang WZ, Song LF, Zou JJ, Su Z, Wu WH (2008) Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. Plant Physiol 148: 1201-1211.
    • (2008) Plant Physiol , vol.148 , pp. 1201-1211
    • Wang, Y.1    Zhang, W.Z.2    Song, L.F.3    Zou, J.J.4    Su, Z.5    Wu, W.H.6
  • 54
    • 0001607018 scopus 로고
    • Analysis of the complexity and diversity of mRNAs from pollen and shoots of Tradescantia
    • Willing RP, Mascarenhas JP (1984) Analysis of the complexity and diversity of mRNAs from pollen and shoots of Tradescantia. Plant Physiol 175: 865-868.
    • (1984) Plant Physiol , vol.175 , pp. 865-868
    • Willing, R.P.1    Mascarenhas, J.P.2
  • 55
    • 33845593844 scopus 로고
    • An analysis of the quantity and diversity of messenger RNAs from pollen and shoots of Zea mays
    • Willing RP, Bashe D, Mascarenhas JP (1988) An analysis of the quantity and diversity of messenger RNAs from pollen and shoots of Zea mays. Theor Appl Genet 75: 751-753.
    • (1988) Theor Appl Genet , vol.75 , pp. 751-753
    • Willing, R.P.1    Bashe, D.2    Mascarenhas, J.P.3
  • 56
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 57
    • 77951871459 scopus 로고    scopus 로고
    • The Skp1-like protein SSK1 is required for cross-pollen compatibility in S-RNase-based self-incompatibility
    • Zhao L, Huang J, Zhao Z, Li Q, Sims TL, Xue Y (2010) The Skp1-like protein SSK1 is required for cross-pollen compatibility in S-RNase-based self-incompatibility. Plant J 62: 52-63.
    • (2010) Plant J , vol.62 , pp. 52-63
    • Zhao, L.1    Huang, J.2    Zhao, Z.3    Li, Q.4    Sims, T.L.5    Xue, Y.6


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