메뉴 건너뛰기




Volumn 7, Issue 2, 2012, Pages

Highly parallel genome-wide expression analysis of single mammalian cells

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; RNA;

EID: 84863015308     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0030794     Document Type: Article
Times cited : (25)

References (54)
  • 1
    • 33845218548 scopus 로고    scopus 로고
    • Transcription factor profiling in individual hematopoietic progenitors by digital RT-PCR
    • Warren L, Bryder D, Weissman IL, Quake SR, (2006) Transcription factor profiling in individual hematopoietic progenitors by digital RT-PCR. Proc Natl Acad Sci U S A 103: 17807-17812.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 17807-17812
    • Warren, L.1    Bryder, D.2    Weissman, I.L.3    Quake, S.R.4
  • 2
    • 68149170798 scopus 로고    scopus 로고
    • Resolving cell population heterogeneity: real-time PCR for simultaneous multiplexed gene detection in multiple single-cell samples
    • Diercks A, Kostner H, Ozinsky A, (2009) Resolving cell population heterogeneity: real-time PCR for simultaneous multiplexed gene detection in multiple single-cell samples. PLoS One 4: e6326.
    • (2009) PLoS One , vol.4
    • Diercks, A.1    Kostner, H.2    Ozinsky, A.3
  • 3
    • 33645544764 scopus 로고    scopus 로고
    • An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis
    • Kurimoto K, Yabuta Y, Ohinata Y, Ono Y, Uno KD, et al. (2006) An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis. Nucleic Acids Res 34: e42.
    • (2006) Nucleic Acids Res , vol.34
    • Kurimoto, K.1    Yabuta, Y.2    Ohinata, Y.3    Ono, Y.4    Uno, K.D.5
  • 4
    • 67349146589 scopus 로고    scopus 로고
    • mRNA-Seq whole-transcriptome analysis of a single cell
    • Tang F, Barbacioru C, Wang Y, Nordman E, Lee C, et al. (2009) mRNA-Seq whole-transcriptome analysis of a single cell. Nat Methods 6: 377-382.
    • (2009) Nat Methods , vol.6 , pp. 377-382
    • Tang, F.1    Barbacioru, C.2    Wang, Y.3    Nordman, E.4    Lee, C.5
  • 5
    • 0028786305 scopus 로고
    • A novel family of genes encoding putative pheromone receptors in mammals
    • Dulac C, Axel R, (1995) A novel family of genes encoding putative pheromone receptors in mammals. Cell 83: 195-206.
    • (1995) Cell , vol.83 , pp. 195-206
    • Dulac, C.1    Axel, R.2
  • 6
    • 0037868952 scopus 로고    scopus 로고
    • Single-cell microarray analysis in hippocampus CA1: demonstration and validation of cellular heterogeneity
    • Kamme F, Salunga R, Yu J, Tran DT, Zhu J, et al. (2003) Single-cell microarray analysis in hippocampus CA1: demonstration and validation of cellular heterogeneity. J Neurosci 23: 3607-3615.
    • (2003) J Neurosci , vol.23 , pp. 3607-3615
    • Kamme, F.1    Salunga, R.2    Yu, J.3    Tran, D.T.4    Zhu, J.5
  • 7
    • 40649084023 scopus 로고    scopus 로고
    • Method for single-cell microarray analysis and application to gene-expression profiling of GABAergic neuron progenitors
    • Esumi S, Wu SX, Yanagawa Y, Obata K, Sugimoto Y, et al. (2008) Method for single-cell microarray analysis and application to gene-expression profiling of GABAergic neuron progenitors. Neurosci Res 60: 439-451.
    • (2008) Neurosci Res , vol.60 , pp. 439-451
    • Esumi, S.1    Wu, S.X.2    Yanagawa, Y.3    Obata, K.4    Sugimoto, Y.5
  • 9
    • 77949458939 scopus 로고    scopus 로고
    • Identification of novel glial genes by single-cell transcriptional profiling of Bergmann glial cells from mouse cerebellum
    • Koirala S, Corfas G, (2010) Identification of novel glial genes by single-cell transcriptional profiling of Bergmann glial cells from mouse cerebellum. PLoS One 5: e9198.
    • (2010) PLoS One , vol.5
    • Koirala, S.1    Corfas, G.2
  • 10
    • 33845629055 scopus 로고    scopus 로고
    • Gene expression profiling of single cells on large-scale oligonucleotide arrays
    • Hartmann CH, Klein CA, (2006) Gene expression profiling of single cells on large-scale oligonucleotide arrays. Nucleic Acids Res 34: e143.
    • (2006) Nucleic Acids Res , vol.34
    • Hartmann, C.H.1    Klein, C.A.2
  • 11
    • 78651486442 scopus 로고    scopus 로고
    • Densely interconnected transcriptional circuits control cell states in human hematopoiesis
    • Novershtern N, Subramanian A, Lawton LN, Mak RH, Haining WN, et al. (2011) Densely interconnected transcriptional circuits control cell states in human hematopoiesis. Cell 144: 296-309.
    • (2011) Cell , vol.144 , pp. 296-309
    • Novershtern, N.1    Subramanian, A.2    Lawton, L.N.3    Mak, R.H.4    Haining, W.N.5
  • 12
    • 0042236515 scopus 로고    scopus 로고
    • Multilineage gene expression in human bone marrow stromal cells as evidenced by single-cell microarray analysis
    • Seshi B, Kumar S, King D, (2003) Multilineage gene expression in human bone marrow stromal cells as evidenced by single-cell microarray analysis. Blood Cells Mol Dis 31: 268-285.
    • (2003) Blood Cells Mol Dis , vol.31 , pp. 268-285
    • Seshi, B.1    Kumar, S.2    King, D.3
  • 13
    • 33747047561 scopus 로고    scopus 로고
    • Single-cell expression profiling of human epidermal stem and transit-amplifying cells: Lrig1 is a regulator of stem cell quiescence
    • Jensen KB, Watt FM, (2006) Single-cell expression profiling of human epidermal stem and transit-amplifying cells: Lrig1 is a regulator of stem cell quiescence. Proc Natl Acad Sci U S A 103: 11958-11963.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 11958-11963
    • Jensen, K.B.1    Watt, F.M.2
  • 14
    • 33745532801 scopus 로고    scopus 로고
    • Increased cell-to-cell variation in gene expression in ageing mouse heart
    • Bahar R, Hartmann CH, Rodriguez KA, Denny AD, Busuttil RA, et al. (2006) Increased cell-to-cell variation in gene expression in ageing mouse heart. Nature 441: 1011-1014.
    • (2006) Nature , vol.441 , pp. 1011-1014
    • Bahar, R.1    Hartmann, C.H.2    Rodriguez, K.A.3    Denny, A.D.4    Busuttil, R.A.5
  • 15
    • 79961092157 scopus 로고    scopus 로고
    • Transcriptome transfer provides a model for understanding the phenotype of cardiomyocytes
    • Kim TK, Sul JY, Peternko NB, Lee JH, Lee M, et al. (2011) Transcriptome transfer provides a model for understanding the phenotype of cardiomyocytes. Proc Natl Acad Sci U S A 108: 11918-11923.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 11918-11923
    • Kim, T.K.1    Sul, J.Y.2    Peternko, N.B.3    Lee, J.H.4    Lee, M.5
  • 16
    • 25844433114 scopus 로고    scopus 로고
    • Gene expression profiling in single cells from the pancreatic islets of Langerhans reveals lognormal distribution of mRNA levels
    • Bengtsson M, Stahlberg A, Rorsman P, Kubista M, (2005) Gene expression profiling in single cells from the pancreatic islets of Langerhans reveals lognormal distribution of mRNA levels. Genome Res 15: 1388-1392.
    • (2005) Genome Res , vol.15 , pp. 1388-1392
    • Bengtsson, M.1    Stahlberg, A.2    Rorsman, P.3    Kubista, M.4
  • 17
    • 37549002543 scopus 로고    scopus 로고
    • Isolation of rare circulating tumour cells in cancer patients by microchip technology
    • Nagrath S, Sequist LV, Maheswaran S, Bell DW, Irimia D, et al. (2007) Isolation of rare circulating tumour cells in cancer patients by microchip technology. Nature 450: 1235-1239.
    • (2007) Nature , vol.450 , pp. 1235-1239
    • Nagrath, S.1    Sequist, L.V.2    Maheswaran, S.3    Bell, D.W.4    Irimia, D.5
  • 19
    • 62649158232 scopus 로고    scopus 로고
    • Isolating highly enriched populations of circulating epithelial cells and other rare cells from blood using a magnetic sweeper device
    • Talasaz AH, Powell AA, Huber DE, Berbee JG, Roh KH, et al. (2009) Isolating highly enriched populations of circulating epithelial cells and other rare cells from blood using a magnetic sweeper device. Proc Natl Acad Sci U S A 106: 3970-3975.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 3970-3975
    • Talasaz, A.H.1    Powell, A.A.2    Huber, D.E.3    Berbee, J.G.4    Roh, K.H.5
  • 20
    • 79959403670 scopus 로고    scopus 로고
    • Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq
    • Islam S, Kjallquist U, Moliner A, Zajac P, Fan J-B, et al. (2011) Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq. Genome Res 21: 1160-1167.
    • (2011) Genome Res , vol.21 , pp. 1160-1167
    • Islam, S.1    Kjallquist, U.2    Moliner, A.3    Zajac, P.4    Fan, J.-B.5
  • 22
    • 14544297828 scopus 로고    scopus 로고
    • Microgenomics: gene expression analysis at the tissue-specific and single-cell levels
    • Brandt SP, (2005) Microgenomics: gene expression analysis at the tissue-specific and single-cell levels. J Exp Bot 56: 495-505.
    • (2005) J Exp Bot , vol.56 , pp. 495-505
    • Brandt, S.P.1
  • 23
    • 33644850222 scopus 로고    scopus 로고
    • Options available for profiling small samples: a review of sample amplification technology when combined with microarray profiling
    • Nygaard V, Hovig E, (2006) Options available for profiling small samples: a review of sample amplification technology when combined with microarray profiling. Nucleic Acids Res 34: 996-1014.
    • (2006) Nucleic Acids Res , vol.34 , pp. 996-1014
    • Nygaard, V.1    Hovig, E.2
  • 24
    • 85047692008 scopus 로고    scopus 로고
    • Amplification of RNA transcripts using terminal continuation
    • Che S, Ginsberg SD, (2004) Amplification of RNA transcripts using terminal continuation. Lab Invest 84: 131-137.
    • (2004) Lab Invest , vol.84 , pp. 131-137
    • Che, S.1    Ginsberg, S.D.2
  • 25
    • 67649436009 scopus 로고    scopus 로고
    • Evaluation of methods for amplification of picogram amounts of total RNA for whole genome expression profiling
    • Clément-Ziza M, Gentien D, Lyonnet S, Thiery JP, Besmond C, et al. (2009) Evaluation of methods for amplification of picogram amounts of total RNA for whole genome expression profiling. BMC Genomics 10: 246.
    • (2009) BMC Genomics , vol.10 , pp. 246
    • Clément-Ziza, M.1    Gentien, D.2    Lyonnet, S.3    Thiery, J.P.4    Besmond, C.5
  • 26
  • 28
    • 77954070555 scopus 로고    scopus 로고
    • Incorporation of non-natural nucleotides into template-switching oligonucleotides reduces background and improves cDNA synthesis from very small RNA samples
    • Kapteyn J, He R, McDowell ET, Gang DR, (2010) Incorporation of non-natural nucleotides into template-switching oligonucleotides reduces background and improves cDNA synthesis from very small RNA samples. BMC Genomics 11: 413.
    • (2010) BMC Genomics , vol.11 , pp. 413
    • Kapteyn, J.1    He, R.2    McDowell, E.T.3    Gang, D.R.4
  • 29
    • 77954738647 scopus 로고    scopus 로고
    • Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan
    • Plessy C, Bertin N, Takahashi H, Simone R, Salimullah M, et al. (2010) Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan. Nat Methods 7: 528-534.
    • (2010) Nat Methods , vol.7 , pp. 528-534
    • Plessy, C.1    Bertin, N.2    Takahashi, H.3    Simone, R.4    Salimullah, M.5
  • 30
  • 31
    • 9444266431 scopus 로고    scopus 로고
    • Optimization and evaluation of T7 based RNA linear amplification protocols for cDNA microarray analysis
    • Zhao H, Hastie T, Whitfield ML, Borresen-Dale AL, Jeffrey SS, (2002) Optimization and evaluation of T7 based RNA linear amplification protocols for cDNA microarray analysis. BMC Genomics 3: 31.
    • (2002) BMC Genomics , vol.3 , pp. 31
    • Zhao, H.1    Hastie, T.2    Whitfield, M.L.3    Borresen-Dale, A.L.4    Jeffrey, S.S.5
  • 32
    • 11844301984 scopus 로고    scopus 로고
    • Global amplification of mRNA by template-switching PCR: linearity and application to microarray analysis
    • Petalidis L, Bhattacharyya S, Morris GA, Collins VP, Freeman TC, et al. (2003) Global amplification of mRNA by template-switching PCR: linearity and application to microarray analysis. Nucleic Acids Res 31: e142.
    • (2003) Nucleic Acids Res , vol.31
    • Petalidis, L.1    Bhattacharyya, S.2    Morris, G.A.3    Collins, V.P.4    Freeman, T.C.5
  • 33
    • 9444231674 scopus 로고    scopus 로고
    • Amplified RNA degradation in T7-amplification methods results in biased microarray hybridizations
    • Spiess AN, Mueller N, Ivell R, (2003) Amplified RNA degradation in T7-amplification methods results in biased microarray hybridizations. BMC Genomics 4: 44.
    • (2003) BMC Genomics , vol.4 , pp. 44
    • Spiess, A.N.1    Mueller, N.2    Ivell, R.3
  • 34
    • 33745025941 scopus 로고    scopus 로고
    • Comparative evaluation of linear and exponential amplification techniques for expression profiling at the single-cell level
    • Subkhankulova T, Livesey FJ, (2006) Comparative evaluation of linear and exponential amplification techniques for expression profiling at the single-cell level. Genome Biol 7: R18.
    • (2006) Genome Biol , vol.7
    • Subkhankulova, T.1    Livesey, F.J.2
  • 35
    • 0033228157 scopus 로고    scopus 로고
    • CapSelect: a highly sensitive method for 5′ CAP-dependent enrichment of full-length cDNA in PCR-mediated analysis of mRNAs
    • Schmidt WM, Mueller MW, (1999) CapSelect: a highly sensitive method for 5′ CAP-dependent enrichment of full-length cDNA in PCR-mediated analysis of mRNAs. Nucleic Acids Res 27: e31.
    • (1999) Nucleic Acids Res , vol.27
    • Schmidt, W.M.1    Mueller, M.W.2
  • 36
    • 0035046755 scopus 로고    scopus 로고
    • Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction
    • Zhu YY, Machleder EM, Chenchik A, Li R, Siebert PD, (2001) Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction. Biotechniques 30: 892-897.
    • (2001) Biotechniques , vol.30 , pp. 892-897
    • Zhu, Y.Y.1    Machleder, E.M.2    Chenchik, A.3    Li, R.4    Siebert, P.D.5
  • 37
    • 0027287587 scopus 로고
    • rPCR: a powerful tool for random amplification of whole RNA sequences
    • Froussard P, (1993) rPCR: a powerful tool for random amplification of whole RNA sequences. PCR Methods Appl 2: 185-190.
    • (1993) PCR Methods Appl , vol.2 , pp. 185-190
    • Froussard, P.1
  • 38
    • 79959203991 scopus 로고    scopus 로고
    • Novel methods for rRNA removal and directional, ligation-free RNA-seq library preparation
    • Sooknanan R, Pease J, Doyle K, (2010) Novel methods for rRNA removal and directional, ligation-free RNA-seq library preparation. Nature Methods 7: i-ii.
    • (2010) Nature Methods , vol.7
    • Sooknanan, R.1    Pease, J.2    Doyle, K.3
  • 39
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang DW, Sherman BT, Lempicki RA, (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 40
    • 6344291988 scopus 로고    scopus 로고
    • Quantification of multiple gene expression in individual cells
    • Peixoto A, Monteiro M, Rocha B, Veiga-Fernandes H, (2004) Quantification of multiple gene expression in individual cells. Genome Res 14: 1938-1947.
    • (2004) Genome Res , vol.14 , pp. 1938-1947
    • Peixoto, A.1    Monteiro, M.2    Rocha, B.3    Veiga-Fernandes, H.4
  • 42
    • 77649238068 scopus 로고    scopus 로고
    • Single-cell gene expression profiling using reverse transcription quantitative real-time PCR
    • Ståhlberg A, Bengtsson M, (2010) Single-cell gene expression profiling using reverse transcription quantitative real-time PCR. Methods 50: 282-288.
    • (2010) Methods , vol.50 , pp. 282-288
    • Ståhlberg, A.1    Bengtsson, M.2
  • 44
    • 8444223546 scopus 로고    scopus 로고
    • Linear mRNA amplification from as little as 5 ng total RNA for global gene expression analysis
    • Dafforn A, Chen P, Deng G, Herrler M, Iglehart D, et al. (2004) Linear mRNA amplification from as little as 5 ng total RNA for global gene expression analysis. Biotechniques 37: 854-857.
    • (2004) Biotechniques , vol.37 , pp. 854-857
    • Dafforn, A.1    Chen, P.2    Deng, G.3    Herrler, M.4    Iglehart, D.5
  • 45
    • 17644361985 scopus 로고    scopus 로고
    • Microarray-based comparison of three amplification methods for nanogram amounts of total RNA
    • Singh R, Maganti RJ, Jabba SV, Wang M, Deng G, et al. (2005) Microarray-based comparison of three amplification methods for nanogram amounts of total RNA. Am J Physiol Cell Physiol 288: C1179-1189.
    • (2005) Am J Physiol Cell Physiol , vol.288
    • Singh, R.1    Maganti, R.J.2    Jabba, S.V.3    Wang, M.4    Deng, G.5
  • 46
    • 68849126751 scopus 로고    scopus 로고
    • A comparison of RNA amplification techniques at sub-nanogram input concentration
    • Lang JE, Magbanua MJ, Scott JH, Makrigiorgos GM, Wang G, et al. (2009) A comparison of RNA amplification techniques at sub-nanogram input concentration. BMC Genomics 10: 326.
    • (2009) BMC Genomics , vol.10 , pp. 326
    • Lang, J.E.1    Magbanua, M.J.2    Scott, J.H.3    Makrigiorgos, G.M.4    Wang, G.5
  • 47
    • 33749444296 scopus 로고    scopus 로고
    • Evidence for diversity in transcriptional profiles of single hematopoietic stem cells
    • Ramos CA, Bowman TA, Boles NC, Merchant AA, Zheng Y, et al. (2006) Evidence for diversity in transcriptional profiles of single hematopoietic stem cells. PLoS Genet 2: e159.
    • (2006) PLoS Genet , vol.2
    • Ramos, C.A.1    Bowman, T.A.2    Boles, N.C.3    Merchant, A.A.4    Zheng, Y.5
  • 48
    • 38849163624 scopus 로고    scopus 로고
    • Sensitive gene expression profiling of human T cell subsets reveals parallel post-thymic differentiation for CD4+ and CD8+ lineages
    • Appay V, Bosio A, Lokan S, Wiencek Y, Biervert C, et al. (2007) Sensitive gene expression profiling of human T cell subsets reveals parallel post-thymic differentiation for CD4+ and CD8+ lineages. J Immunol 179: 7406-7414.
    • (2007) J Immunol , vol.179 , pp. 7406-7414
    • Appay, V.1    Bosio, A.2    Lokan, S.3    Wiencek, Y.4    Biervert, C.5
  • 50
    • 37349044981 scopus 로고    scopus 로고
    • A microfluidic processor for gene expression profiling of single human embryonic stem cells
    • Zhong JF, Chen Y, Marcus JS, Scherer A, Quake SR, et al. (2008) A microfluidic processor for gene expression profiling of single human embryonic stem cells. Lab Chip 8: 68-74.
    • (2008) Lab Chip , vol.8 , pp. 68-74
    • Zhong, J.F.1    Chen, Y.2    Marcus, J.S.3    Scherer, A.4    Quake, S.R.5
  • 51
    • 38849199681 scopus 로고    scopus 로고
    • Visualizing spatiotemporal dynamics of multicellular cell-cycle progression
    • Sakaue-Sawano A, Kurokawa H, Morimura T, Hanyu A, Hama H, et al. (2008) Visualizing spatiotemporal dynamics of multicellular cell-cycle progression. Cell 132: 487-498.
    • (2008) Cell , vol.132 , pp. 487-498
    • Sakaue-Sawano, A.1    Kurokawa, H.2    Morimura, T.3    Hanyu, A.4    Hama, H.5
  • 52
    • 0031791379 scopus 로고    scopus 로고
    • Selection of human ovarian carcinoma cells with high dissemination potential by repeated passage of the cells in vivo into nude mice, and involvement of Le(x)-determinant in the dissemination potential
    • Kiguchi K, Iwamori M, Mochizuki Y, Kishikawa T, Tsukazaki K, et al. (1998) Selection of human ovarian carcinoma cells with high dissemination potential by repeated passage of the cells in vivo into nude mice, and involvement of Le(x)-determinant in the dissemination potential. Jpn J Cancer Res 89: 923-932.
    • (1998) Jpn J Cancer Res , vol.89 , pp. 923-932
    • Kiguchi, K.1    Iwamori, M.2    Mochizuki, Y.3    Kishikawa, T.4    Tsukazaki, K.5
  • 53
    • 49249091523 scopus 로고    scopus 로고
    • Identification and characterization of ovarian cancer-initiating cells from primary human tumors
    • Zhang S, Balch C, Chan MW, Lai HC, Matei D, et al. (2008) Identification and characterization of ovarian cancer-initiating cells from primary human tumors. Cancer Res 68: 4311-4320.
    • (2008) Cancer Res , vol.68 , pp. 4311-4320
    • Zhang, S.1    Balch, C.2    Chan, M.W.3    Lai, H.C.4    Matei, D.5
  • 54
    • 77949529725 scopus 로고    scopus 로고
    • Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples
    • April C, Klotzle B, Royce T, Wickham-Garcia E, Boyaniwsky T, et al. (2009) Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples. PLoS One 4: e8162.
    • (2009) PLoS One , vol.4
    • April, C.1    Klotzle, B.2    Royce, T.3    Wickham-Garcia, E.4    Boyaniwsky, T.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.