-
1
-
-
33745256005
-
Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
-
Anisimova, M. & Gascuel, O. (2006). Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Syst Biol 55, 539-552.
-
(2006)
Syst Biol
, vol.55
, pp. 539-552
-
-
Anisimova, M.1
Gascuel, O.2
-
2
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford, M. M. (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72, 248-254.
-
(1976)
Anal Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
3
-
-
0017758250
-
A rapid method for the base ratio determination of bacterial DNA
-
Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
-
(1977)
Anal Biochem
, vol.81
, pp. 461-466
-
-
Cashion, P.1
Holder-Franklin, M.A.2
McCully, J.3
Franklin, M.4
-
4
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana, J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17, 540-552.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
5
-
-
33750314083
-
TreeDyn: Towards dynamic graphics and annotations for analyses of trees
-
Chevenet, F., Brun, C., Bañuls, A.-L., Jacq, B. & Christen, R. (2006). TreeDyn: towards dynamic graphics and annotations for analyses of trees. BMC Bioinformatics 7, 439.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 439
-
-
Chevenet, F.1
Brun, C.2
Bañuls, A.-L.3
Jacq, B.4
Christen, R.5
-
6
-
-
37349072182
-
Evidence that the potential for dissimilatory ferric iron reduction is widespread among acidophilic heterotrophic bacteria
-
Coupland, K. & Johnson, D. B. (2008). Evidence that the potential for dissimilatory ferric iron reduction is widespread among acidophilic heterotrophic bacteria. FEMS Microbiol Lett 279, 30-35.
-
(2008)
FEMS Microbiol Lett
, vol.279
, pp. 30-35
-
-
Coupland, K.1
Johnson, D.B.2
-
7
-
-
33645229098
-
Dokdonella fugitiva sp. nov., a Gammaproteobacterium isolated from potting soil
-
Cunha, S., Tiago, I., LuísaPires, A., da Costa, M. S. & Veríssimo, A. (2006). Dokdonella fugitiva sp. nov., a Gammaproteobacterium isolated from potting soil. Syst Appl Microbiol 29, 191-196.
-
(2006)
Syst Appl Microbiol
, vol.29
, pp. 191-196
-
-
Cunha, S.1
Tiago, I.2
LuísaPires, A.3
da Costa, M.S.4
Veríssimo, A.5
-
8
-
-
48249102000
-
Phylogeny. fr: Robust phylogenetic analysis for the non-specialist
-
other authors (Web Server issue)
-
Dereeper, A., Guignon, V., Blanc, G., Audic, S., Buffet, S., Chevenet, F., Dufayard, J.-F., Guindon, S., Lefort, V. & other authors (2008). Phylogeny. fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res 36 (Web Server issue), W465-W469.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Dereeper, A.1
Guignon, V.2
Blanc, G.3
Audic, S.4
Buffet, S.5
Chevenet, F.6
Dufayard, J.-F.7
Guindon, S.8
Lefort, V.9
-
9
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32, 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
10
-
-
33947657892
-
Fast computation of distance estimators
-
Elias, I. & Lagergren, J. (2007). Fast computation of distance estimators. BMC Bioinformatics 8, 89.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 89
-
-
Elias, I.1
Lagergren, J.2
-
11
-
-
0000122573
-
PHYLIP-Phylogeny Inference Package (version 3.2)
-
Felsenstein, J. (1989). PHYLIP-Phylogeny Inference Package (version 3.2). Cladistics 5, 164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
12
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
Guindon, S., Dufayard, J.-F., Lefort, V., Anisimova, M., Hordijk, W. & Gascuel, O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59, 307-321.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.-F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
13
-
-
0141938368
-
Novel acidophiles isolated from moderately acidic mine drainage waters
-
Hallberg, K. B. & Johnson, D. B. (2003). Novel acidophiles isolated from moderately acidic mine drainage waters. Hydrometallurgy 71, 139-148.
-
(2003)
Hydrometallurgy
, vol.71
, pp. 139-148
-
-
Hallberg, K.B.1
Johnson, D.B.2
-
14
-
-
84862798125
-
Geomicrobiology of extremely acidic subsurface environments
-
Johnson, D. B. (2012). Geomicrobiology of extremely acidic subsurface environments. FEMS Microbiol Ecol 81, 2-12.
-
(2012)
FEMS Microbiol Ecol
, vol.81
, pp. 2-12
-
-
Johnson, D.B.1
-
15
-
-
0025777426
-
A highly efficient and universal solid medium for growing mesophilic and moderately themophilic, iron oxidizing, acidophilic bacteria
-
Johnson, D. B. & McGinness, S. (1991). A highly efficient and universal solid medium for growing mesophilic and moderately themophilic, iron oxidizing, acidophilic bacteria. J Microbiol Methods 13, 113-122.
-
(1991)
J Microbiol Methods
, vol.13
, pp. 113-122
-
-
Johnson, D.B.1
McGinness, S.2
-
16
-
-
0000732090
-
Evolution of protein molecules
-
In Edited by H. N. Munro. New York: Academic Press
-
Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
17
-
-
70449248928
-
Electron microscope study of DNA-containing plasms. II. Vegetative and mature phage DNA as compared with normal bacterial nucleoids in different physiological states
-
Kellenberger, E., Ryter, A. & Sechaud, J. (1958). Electron microscope study of DNA-containing plasms. II. Vegetative and mature phage DNA as compared with normal bacterial nucleoids in different physiological states. J Biophys Biochem Cytol 4, 671-678.
-
(1958)
J Biophys Biochem Cytol
, vol.4
, pp. 671-678
-
-
Kellenberger, E.1
Ryter, A.2
Sechaud, J.3
-
18
-
-
0033843651
-
A fast and simple turbidimetric method for the determination of sulfate in sulfatereducing bacterial cultures
-
Kolmert, A., Wikström, P. & Hallberg, K. B. (2000). A fast and simple turbidimetric method for the determination of sulfate in sulfatereducing bacterial cultures. J Microbiol Methods 41, 179-184.
-
(2000)
J Microbiol Methods
, vol.41
, pp. 179-184
-
-
Kolmert, A.1
Wikström, P.2
Hallberg, K.B.3
-
19
-
-
77956816836
-
Classical and rapid identification methods for medically important bacteria
-
Lányí, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
-
(1987)
Methods Microbiol
, vol.19
, pp. 1-67
-
-
Lányí, B.1
-
20
-
-
78650409281
-
Ecophysiology of Fe-cycling bacteria in acidic sediments
-
Lu, S., Gischkat, S., Reiche, M., Akob, D. M., Hallberg, K. B. & Küsel, K. (2010). Ecophysiology of Fe-cycling bacteria in acidic sediments. Appl Environ Microbiol 76, 8174-8183.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 8174-8183
-
-
Lu, S.1
Gischkat, S.2
Reiche, M.3
Akob, D.M.4
Hallberg, K.B.5
Küsel, K.6
-
21
-
-
0001369336
-
A buffer solution for colorimetric comparison
-
McIlvaine, T. C. (1921). A buffer solution for colorimetric comparison. J Biol Chem 49, 183-186.
-
(1921)
J Biol Chem
, vol.49
, pp. 183-186
-
-
McIlvaine, T.C.1
-
22
-
-
0036022462
-
Fulvimonas soli gen. nov., sp. nov., a gamma-proteobacterium isolated from soil after enrichment on acetylated starch plastic
-
Mergaert, J., Cnockaert, M. C. & Swings, J. (2002). Fulvimonas soli gen. nov., sp. nov., a gamma-proteobacterium isolated from soil after enrichment on acetylated starch plastic. Int J Syst Evol Microbiol 52, 1285-1289.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 1285-1289
-
-
Mergaert, J.1
Cnockaert, M.C.2
Swings, J.3
-
23
-
-
0000198211
-
Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography
-
Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
-
(1989)
Int J Syst Bacteriol
, vol.39
, pp. 159-167
-
-
Mesbah, M.1
Premachandran, U.2
Whitman, W.B.3
-
24
-
-
0026689211
-
16S rDNA analysis of Spirochaeta thermophila-its phylogenetic position and implications for the systematics of the order Spirochaetales
-
Rainey, F. A., Dorsch, M., Morgan, H. W. & Stackebrandt, E. (1992). 16S rDNA analysis of Spirochaeta thermophila-its phylogenetic position and implications for the systematics of the order Spirochaetales. Syst Appl Microbiol 15, 197-202.
-
(1992)
Syst Appl Microbiol
, vol.15
, pp. 197-202
-
-
Rainey, F.A.1
Dorsch, M.2
Morgan, H.W.3
Stackebrandt, E.4
-
25
-
-
62849125044
-
The photosynthetic apparatus and its regulation in the aerobic gammaproteobacterium Congregibacter litoralis gen. nov., sp. nov
-
Spring, S., Lünsdorf, H., Fuchs, B. M. & Tindall, B. J. (2009). The photosynthetic apparatus and its regulation in the aerobic gammaproteobacterium Congregibacter litoralis gen. nov., sp. nov. PLoS ONE 4, e4866.
-
(2009)
PLoS ONE
, vol.4
-
-
Spring, S.1
Lünsdorf, H.2
Fuchs, B.M.3
Tindall, B.J.4
-
26
-
-
33847670407
-
Ferrozine-a new spectrophotometric reagent for iron
-
Stookey, L. L. (1970). Ferrozine-a new spectrophotometric reagent for iron. Anal Chem 42, 779-781.
-
(1970)
Anal Chem
, vol.42
, pp. 779-781
-
-
Stookey, L.L.1
-
27
-
-
70349330956
-
Dokdonella ginsengisoli sp. nov., isolated from soil from a ginseng field, and emended description of the genus Dokdonella
-
Ten, L. N., Jung, H.-M., Im, W.-T., Oh, H. W., Yang, D.-C., Yoo, S.-A. & Lee, S.-T. (2009). Dokdonella ginsengisoli sp. nov., isolated from soil from a ginseng field, and emended description of the genus Dokdonella. Int J Syst Evol Microbiol 59, 1947-1952.
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 1947-1952
-
-
Ten, L.N.1
Jung, H.-M.2
Im, W.-T.3
Oh, H.W.4
Yang, D.-C.5
Yoo, S.-A.6
Lee, S.-T.7
-
28
-
-
0025324750
-
A comparative study of the lipid composition of Halobacterium saccharovorum from various sources
-
Tindall, B. J. (1990a). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128-130.
-
(1990)
Syst Appl Microbiol
, vol.13
, pp. 128-130
-
-
Tindall, B.J.1
-
29
-
-
0025098748
-
Lipid composition of Halobacterium lacusprofundi
-
Tindall, B. J. (1990b). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
-
(1990)
FEMS Microbiol Lett
, vol.66
, pp. 199-202
-
-
Tindall, B.J.1
-
30
-
-
65949111437
-
Phenotypic characterization and the principles of comparative systematics
-
In 3rd edn, Edited by C. A. Reddy, T. J. Beveridge, J. A. Breznak, G. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, DC, USA: American Society for Microbiology
-
Tindall, B. J., Sikorski, J., Smibert, R. M. & Kreig, N. R. (2007). Phenotypic characterization and the principles of comparative systematics. In Methods for General and Molecular Microbiology, 3rd edn, pp. 330-393. Edited by C. A. Reddy, T. J. Beveridge, J. A. Breznak, G. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, DC, USA: American Society for Microbiology.
-
(2007)
Methods for General and Molecular Microbiology
, pp. 330-393
-
-
Tindall, B.J.1
Sikorski, J.2
Smibert, R.M.3
Kreig, N.R.4
-
31
-
-
16844380027
-
Dyella japonica gen. nov., sp. nov., a cproteobacterium isolated from soil
-
Xie, C.-H. & Yokota, A. (2005). Dyella japonica gen. nov., sp. nov., a cproteobacterium isolated from soil. Int J Syst Evol Microbiol 55, 753-756.
-
(2005)
Int J Syst Evol Microbiol
, vol.55
, pp. 753-756
-
-
Xie, C.-H.1
Yokota, A.2
-
32
-
-
70349326016
-
Dokdonella soli sp. nov., a gammaproteobacterium isolated from soil
-
Yoo, S.-H., Weon, H.-Y., Anandham, R., Kim, B.-Y., Hong, S.-B., Jeon, Y.-A., Koo, B.-S. & Kwon, S.-W. (2009). Dokdonella soli sp. nov., a gammaproteobacterium isolated from soil. Int J Syst Evol Microbiol 59, 1965-1968.
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 1965-1968
-
-
Yoo, S.-H.1
Weon, H.-Y.2
Anandham, R.3
Kim, B.-Y.4
Hong, S.-B.5
Jeon, Y.-A.6
Koo, B.-S.7
Kwon, S.-W.8
-
33
-
-
31144473912
-
Dokdonella koreensis gen. nov., sp. nov., isolated from soil
-
Yoon, J.-H., Kang, S.-J. & Oh, T.-K. (2006). Dokdonella koreensis gen. nov., sp. nov., isolated from soil. Int J Syst Evol Microbiol 56, 145-150.
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 145-150
-
-
Yoon, J.-H.1
Kang, S.-J.2
Oh, T.-K.3
-
34
-
-
69949087390
-
Matrix composition and community structure analysis of a novel bacterial pyrite leaching community
-
Ziegler, S., Ackermann, S., Majzlan, J. & Gescher, J. (2009). Matrix composition and community structure analysis of a novel bacterial pyrite leaching community. Environ Microbiol 11, 2329-2338.
-
(2009)
Environ Microbiol
, vol.11
, pp. 2329-2338
-
-
Ziegler, S.1
Ackermann, S.2
Majzlan, J.3
Gescher, J.4
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