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Volumn 7, Issue 1, 2013, Pages 418-442

Variable selection for sparse Dirichlet-multinomial regression with an application to microbiome data analysis

Author keywords

Coordinate descent; Counts data; Overdispersion; Regularized likelihood; Sparse group penalty

Indexed keywords


EID: 84876058250     PISSN: 19326157     EISSN: 19417330     Source Type: Journal    
DOI: 10.1214/12-AOAS592     Document Type: Article
Times cited : (181)

References (22)
  • 1
    • 0001218562 scopus 로고
    • The statistical analysis of compositional data
    • Aitchison, J. (1982). The statistical analysis of compositional data. J. R. Stat. Soc. Ser. B Stat. Methodol. 44 139-177.
    • (1982) J. R. Stat. Soc. Ser. B Stat. Methodol , vol.44 , pp. 139-177
    • Aitchison, J.1
  • 4
    • 0037202448 scopus 로고    scopus 로고
    • Generalized additive modelling and zero inflated count data
    • Barry, S. and Welsh, A. (2002). Generalized additive modelling and zero inflated count data. Ecological Modelling 157 179-188.
    • (2002) Ecological Modelling , vol.157 , pp. 179-188
    • Barry, S.1    Welsh, A.2
  • 5
    • 78449296237 scopus 로고    scopus 로고
    • Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
    • Benson, A. K., Kelly, S. A., Legge, R., Ma, F., Low, S. J., Kim, J., Zhang, M., Oh, P. L., Nehrenberg, D., Hua, K. et al. (2010). Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors. Proc. Natl. Acad. Sci. USA 107 18933-18938.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 18933-18938
    • Benson, A.K.1    Kelly, S.A.2    Legge, R.3    Ma, F.4    Low, S.J.5    Kim, J.6    Zhang, M.7    Oh, P.L.8    Nehrenberg, D.9    Hua, K.10
  • 8
    • 32544443155 scopus 로고    scopus 로고
    • Multi-level zero-inflated Poisson regression modelling of correlated count data with excess zeros
    • Lee, A. H., Wang, K., Scott, J. A., Yau, K. K. W. and McLachlan, G. J. (2006). Multi-level zero-inflated Poisson regression modelling of correlated count data with excess zeros. Stat. Methods Med. Res. 15 47-61.
    • (2006) Stat. Methods Med. Res , vol.15 , pp. 47-61
    • Lee, A.H.1    Wang, K.2    Scott, J.A.3    Yau, K.K.W.4    McLachlan, G.J.5
  • 10
    • 77958610660 scopus 로고    scopus 로고
    • Placer: Linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
    • Matsen, F. A., Kodner, R. B. and Armbrust, E. V. (2010). Placer: Linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree. BMC Bioinformatics 11 538.
    • (2010) BMC Bioinformatics , vol.11 , pp. 538
    • Matsen, F.A.1    Kodner, R.B.2    Armbrust, E.V.3
  • 11
    • 0035133496 scopus 로고    scopus 로고
    • Fitting multivariate models to community data: A comment on distance-based redundancy analysis
    • McArdle, B. H. (2001). Fitting multivariate models to community data: A comment on distance-based redundancy analysis. Ecology 82 290-297.
    • (2001) Ecology , vol.82 , pp. 290-297
    • McArdle, B.H.1
  • 13
    • 50349098273 scopus 로고    scopus 로고
    • Multilevel zero-inflated negative binomial regression modeling for over-dispersed count data with extra zeros
    • Moghimbeigi, A., Eshraghian, M. R., Mohammad, K. and McArdle, B. (2008). Multilevel zero-inflated negative binomial regression modeling for over-dispersed count data with extra zeros. J. Appl. Stat. 35 1193-1202.
    • (2008) J. Appl. Stat , vol.35 , pp. 1193-1202
    • Moghimbeigi, A.1    Eshraghian, M.R.2    Mohammad, K.3    McArdle, B.4
  • 14
    • 0002567040 scopus 로고
    • On the compound multinomial distribution, the multivariate ß-distribution, and correlations among proportions
    • Mosimann, J. E. (1962). On the compound multinomial distribution, the multivariate ß-distribution, and correlations among proportions. Biometrika 49 65-82.
    • (1962) Biometrika , vol.49 , pp. 65-82
    • Mosimann, J.E.1
  • 15
    • 84870267097 scopus 로고    scopus 로고
    • Regularized multivariate regression for identifying master predictors with application to integrative genomics study of breast cancer
    • Peng, J., Zhu, J., Bergamaschi, A., Han, W., Noh, D.-Y., Pollack, J. R. and Wang, P. (2010). Regularized multivariate regression for identifying master predictors with application to integrative genomics study of breast cancer. Ann. Appl. Stat. 4 53-77.
    • (2010) Ann. Appl. Stat , vol.4 , pp. 53-77
    • Peng, J.1    Zhu, J.2    Bergamaschi, A.3    Han, W.4    Noh, D.-Y.5    Pollack, J.R.6    Wang, P.7
  • 18
    • 46749146509 scopus 로고    scopus 로고
    • A coordinate gradient descent method for nonsmooth separable minimization
    • Tseng, P. and Yun, S. (2008). A coordinate gradient descent method for nonsmooth separable minimization. Math. Program. 117 387-423.
    • (2008) Math. Program , vol.117 , pp. 387-423
    • Tseng, P.1    Yun, S.2
  • 19
    • 80053462850 scopus 로고    scopus 로고
    • Metagenomics and personalized medicine
    • Virgin, H. W. and Todd, J. A. (2011). Metagenomics and personalized medicine. Cell 147 44-56.
    • (2011) Cell , vol.147 , pp. 44-56
    • Virgin, H.W.1    Todd, J.A.2
  • 21
    • 47749133494 scopus 로고    scopus 로고
    • Variable selection for the multicategory SVM via adaptive sup-norm regularization
    • Zhang, H. H., Liu, Y., Wu, Y. and Zhu, J. (2008). Variable selection for the multicategory SVM via adaptive sup-norm regularization. Electron. J. Stat. 2 149-167.
    • (2008) Electron. J. Stat , vol.2 , pp. 149-167
    • Zhang, H.H.1    Liu, Y.2    Wu, Y.3    Zhu, J.4
  • 22
    • 69949155103 scopus 로고    scopus 로고
    • The composite absolute penalties family for grouped and hierarchical variable selection
    • Zhao, P., Rocha, G. and Yu, B. (2009). The composite absolute penalties family for grouped and hierarchical variable selection. Ann. Statist. 37 3468-3497.
    • (2009) Ann. Statist , vol.37 , pp. 3468-3497
    • Zhao, P.1    Rocha, G.2    Yu, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.