A novel approach to probabilistic biomarker-based classification using functional near-infrared spectroscopy

Human Brain Mapping

Volumn 34, Issue 5, 2013, Pages 1102-1114

  Hahn, Tim ^a,b   Marquand, Andre F ^c   Plichta, Michael M ^d   Ehlis, Ann Christine ^e   Schecklmann, Martin W ^f   Dresler, Thomas ^b   Jarczok, Tomasz A ^b   Eirich, Elisa ^b   Leonhard, Christine ^b   Reif, Andreas ^b   Lesch, Klaus Peter ^b   Brammer, Michael J ^c   Mourao Miranda, Janaina ^c,g   Fallgatter, Andreas J ^e  

^a GOETHE UNIVERSITY   (Germany)

^b UNIVERSITY OF WÜRZBURG   (Germany)

^c KING'S COLLEGE LONDON   (United Kingdom)

^d CENTRAL INSTITUTE OF MENTAL HEALTH   (Germany)

^e UNIVERSITY HOSPITAL TÜBINGEN   (Germany)

^f UNIVERSITY OF REGENSBURG   (Germany)

^g UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

Disease prevalence; Schizophrenia; Single subject classification; Temporal classification

Indexed keywords

ADULT; ARTICLE; BOLD SIGNAL; CLINICAL ARTICLE; CONTROLLED STUDY; DISEASE CLASSIFICATION; FEMALE; FUNCTIONAL NEAR INFRARED SPECTROSCOPY; FUNCTIONAL NEUROIMAGING; HUMAN; MALE; MEASUREMENT ACCURACY; NEAR INFRARED SPECTROSCOPY; PATTERN RECOGNITION; PRIORITY JOURNAL; PROBABILISTIC PATTERN RECOGNITION; SCHIZOPHRENIA; TASK PERFORMANCE; VALIDITY; WORKING MEMORY;

ADULT; BRAIN MAPPING; FEMALE; FUNCTIONAL LATERALITY; HEMOGLOBINS; HUMANS; MALE; MEMORY, SHORT-TERM; MIDDLE AGED; MODELS, PSYCHOLOGICAL; MYOGLOBIN; PATTERN RECOGNITION, VISUAL; PHOTIC STIMULATION; PREDICTIVE VALUE OF TESTS; PROBABILITY; REPRODUCIBILITY OF RESULTS; SCHIZOPHRENIA; SPECTROSCOPY, NEAR-INFRARED; VISUAL CORTEX; VOCABULARY; YOUNG ADULT;

EID: 84875900510     PISSN: 10659471     EISSN: 10970193     Source Type: Journal    
DOI: 10.1002/hbm.21497     Document Type: Article

References (48)

1. Arbeitsgemeinschaft fMuDidP. 2000. Das AMDP-System. Manual zur Dokumentation psychiatrischer Befunde. Göttingen, Germany: Hogrefe.
2. Avidan G, Harel M, Hendler T, Ben-Bashat D, Zohary E, Malach R ( 2002): Contrast sensitivity in human visual areas and its relationship to object recognition. J Neurophysiol 87( 6): 3102-3116.
3. Bishop CM ( 2007): Pattern Recognition and Machine Learning. Berlin: Springer. p. 738.
4. Boynton GM, Demb JB, Glover GH, Heeger DJ ( 1999): Neuronal basis of contrast discrimination. Vision Res 39( 2): 257-269.
5. Brodersen KH, Cheng Soon O, Stephan KE, Buhmann JM ( 2010): The balanced accuracy and its posterior distribution. Proceedings of the 2010 20th International Conference on Pattern Recognition (ICPR 2010), August 23-26, Istanbul, Turkey.
6. Calhoun VD, Maciejewski PK, Pearlson GD, Kiehl KA ( 2008): Temporal lobe and "default" hemodynamic brain modes discriminate between schizophrenia and bipolar disorder. Hum Brain Mapp 29( 11): 1265-1275.
7. Davatzikos C, Shen D, Gur RC, Wu X, Liu D, Fan Y, Hughett P, Turetsky BI, Gur RE ( 2005): Whole-brain morphometric study of schizophrenia revealing a spatially complex set of focal abnormalities. Arch Gen Psychiatry 62( 11): 1218-1227.
8. Demirci O, Clark VP, Magnotta VA, Andreasen NC, Lauriello J, Kiehl KA, Pearlson GD, Calhoun VD ( 2008): A review of challenges in the use of fMRI for disease classification/characterization and a projection pursuit application from multi-site fMRI schizophrenia study. Brain Imag Behav 2( 3): 147-226.
9. Dresler T, Obersteiner A, Schecklmann M, Vogel AC, Ehlis AC, Richter MM, Plichta MM, Reiss K, Pekrun R, Fallgatter AJ ( 2009): Arithmetic tasks in different formats and their influence on behavior and brain oxygenation as assessed with near-infrared spectroscopy (NIRS): a study involving primary and secondary school children. J Neural Transm 116( 12): 1689-1700.
10. Ecker C, Rocha-Rego V, Johnston P, Mourao-Miranda J, Marquand A, Daly EM, Brammer MJ, Murphy C, Murphy DG ( 2009): Investigating the predictive value of whole-brain structural MR scans in autism: a pattern classification approach. NeuroImage 49( 1): 44-56.
11. Ehlis AC, Herrmann MJ, Wagener A, Fallgatter AJ ( 2005): Multi-channel near-infrared spectroscopy detects specific inferior-frontal activation during incongruent Stroop trials. Biol Psychol 69( 3): 315-331.
12. Fallgatter AJ, Ehlis A, Wagener A, Michel T, Herrmann MJ ( 2004): Near-infrared spectroscopy in psychiatry. Nervenarzt 75( 9): 911-916.
13. Fu CH, Mourao-Miranda J, Costafreda SG, Khanna A, Marquand AF, Williams SC, Brammer MJ ( 2008): Pattern classification of sad facial processing: toward the development of neurobiological markers in depression. Biol Psychiatry 63( 7): 656-662.
14. Gigerenzer G, Edwards A ( 2003): Simple tools for understanding risks: From innumeracy to insight. Br Med J 327( 7417): 741-744.
15. Guyon I, Elisseeff A ( 2003): An introduction to variable and feature selection. J Machine Learn Res 3: 1157-1182.
16. Hahn T, Heinzel S, Plichta MM, Reif A, Lesch K-P, Fallgatter AJ ( 2010): Neurovascular coupling in the human visual cortex is modulated by cyclooxygenase-1 (COX-1) gene variant. Cerebral Cortex 68: 459-464.
17. Hahn T, Marquand AF, Ehlis AC, Dresler T, Kittel-Schneider S, Jarczok TA, Lesch KP, Jakob PM, Mourao-Miranda J, Brammer MJ, Fallgatter AJ ( 2011): Integrating neurobiological markers of depression. Arch Gen Psychiatry 68: 361-368.
18. Heeger DJ, Ress D ( 2002): What does fMRI tell us about neuronal activity? Nat Rev Neurosci 3( 2): 142-151.
19. Herrmann MJ, Langer JB, Jacob C, Ehlis AC, Fallgatter AJ ( 2008): Reduced prefrontal oxygenation in Alzheimer disease during verbal fluency tasks. Am J Geriatr Psychiatry 16( 2): 125-135.
20. Hoshi Y ( 2003): Functional near-infrared optical imaging: utility and limitations in human brain mapping. Psychophysiology 40( 4): 511-520.
21. Jasper HA ( 1958): The ten-twenty system of the International Federation. Electroencephalogr. Clin. Neurophysiol. 10: 371-375.
22. Job DE, Whalley HC, McIntosh AM, Owens DG, Johnstone EC, Lawrie SM ( 2006): Grey matter changes can improve the prediction of schizophrenia in subjects at high risk. BMC Med 4: 29.
23. Kawasaki Y, Suzuki M, Kherif F, Takahashi T, Zhou SY, Nakamura K, Matsui M, Sumiyoshi T, Seto H, Kurachi M ( 2007): Multivariate voxel-based morphometry successfully differentiates schizophrenia patients from healthy controls. NeuroImage 34( 1): 235-242.
24. Marquand AF, Mourao-Miranda J, Brammer MJ, Cleare AJ, Fu CH ( 2008): Neuroanatomy of verbal working memory as a diagnostic biomarker for depression. Neuroreport 19( 15): 1507-1511.
25. Marquand A, Howard M, Brammer M, Chu C, Coen S, Mourao-Miranda J ( 2010): Quantitative prediction of subjective pain intensity from whole-brain fMRI data using Gaussian processes. NeuroImage 49( 3): 2178-2189.
26. Minka TP ( 2001): A Family of Algorithms for Approximate Bayesian Inference. Massachusetts Institute of Technology.
27. Mourao-Miranda J, Bokde AL, Born C, Hampel H, Stetter M ( 2005): Classifying brain states and determining the discriminating activation patterns: Support vector machine on functional MRI data. NeuroImage 28( 4): 980-995.
28. Mourao-Miranda J, Friston KJ, Brammer M ( 2007): Dynamic discrimination analysis: a spatial-temporal SVM. NeuroImage 36( 1): 88-99.
29. Nakamura K, Kawasaki Y, Suzuki M, Hagino H, Kurokawa K, Takahashi T, Niu L, Matsui M, Seto H, Kurachi M ( 2004): Multiple structural brain measures obtained by three-dimensional magnetic resonance imaging to distinguish between schizophrenia patients and normal subjects. Schizophr Bull 30( 2): 393-404.
30. Obrig H, Villringer A ( 2003): Beyond the visible--imaging the human brain with light. J Cereb Blood Flow Metab 23( 1): 1-18.
31. Ozus B, Liu HL, Chen L, Iyer MB, Fox PT, Gao JH ( 2001): Rate dependence of human visual cortical response due to brief stimulation: An event-related fMRI study. Magn Reson Imag 19( 1): 21-25.
32. Platt J. 1999. Probabilities for SV machines. In: Sholkopf B, Burges C, Smola A, editors. Advances in Large Margin Classifiers. Cambridge: The MIT press. p 61-74.
33. Plichta MM, Herrmann MJ, Baehne CG, Ehlis AC, Richter MM, Pauli P, Fallgatter AJ ( 2006a): Event-related functional near-infrared spectroscopy (fNIRS): Are the measurements reliable? Neuroimage 31( 1): 116-124.
34. Plichta MM, Herrmann MJ, Ehlis AC, Baehne CG, Richter MM, Fallgatter AJ ( 2006b): Event-related visual versus blocked motor task: Detection of specific cortical activation patterns with functional near-infrared spectroscopy. Neuropsychobiology 53( 2): 77-82.
35. Plichta MM, Heinzel S, Ehlis AC, Pauli P, Fallgatter AJ ( 2007a): Model-based analysis of rapid event-related functional near-infrared spectroscopy (NIRS) data: A parametric validation study. Neuroimage 35( 2): 625-634.
36. Plichta MM, Herrmann MJ, Baehne CG, Ehlis AC, Richter MM, Pauli P, Fallgatter AJ ( 2007b): Event-related functional near-infrared spectroscopy (fNIRS) based on craniocerebral correlations: reproducibility of activation? Hum Brain Mapp 28( 8): 733-741.
37. Pokrajac D, Megalooikonomou V, Lazarevic A, Kontos D, Obradovic Z ( 2005): Applying spatial distribution analysis techniques to classification of 3D medical images. Artif Intell Med 33( 3): 261-280.
38. Rasmussen CE, Williams CKI. 2006. Gaussian Processes for Machine Learning. Cambridge, Massachusetts: MIT press.
39. Reif A, Schecklmann M, Eirich E, Jacob CP, Jarczok TA, Kittel-Schneider S, Lesch KP, Fallgatter AJ, Ehlis AC ( 2011): A functional promoter polymorphism of neuronal nitric oxide synthase moderates prefrontal functioning in schizophrenia. Int J Neuropsychopharmacol 14: 1-11.
40. Schecklmann M, Ehlis AC, Plichta MM, Fallgatter AJ ( 2008a): Functional near-infrared spectroscopy: a long-term reliable tool for measuring brain activity during verbal fluency. Neuroimage 43( 1): 147-155.
41. Schecklmann M, Ehlis AC, Plichta MM, Romanos J, Heine M, Boreatti-Hummer A, Jacob C, Fallgatter AJ ( 2008b): Diminished prefrontal oxygenation with normal and above-average verbal fluency performance in adult ADHD. J Psychiatr Res 43( 2): 98-106.
42. Shen H, Wang L, Liu Y, Hu D ( 2010): Discriminative analysis of resting-state functional connectivity patterns of schizophrenia using low dimensional embedding of fMRI. NeuroImage 49( 4): 3110-3121.
43. Suto T, Fukuda M, Ito M, Uehara T, Mikuni M ( 2004): Multichannel near-infrared spectroscopy in depression and schizophrenia: Cognitive brain activation study. Biol Psychiatry 55( 5): 501-511.
44. Takayanagi Y, Kawasaki Y, Nakamura K, Takahashi T, Orikabe L, Toyoda E, Mozue Y, Sato Y, Itokawa M, Yamasue H, Kasai K, Kurachi M, Okazaki Y, Matsushita M, Suzuki M ( 2010): Differentiation of first-episode schizophrenia patients from healthy controls using ROI-based multiple structural brain variables. Prog Neuropsychopharmacol Biol Psychiatry 34( 1): 10-17.
45. Tipping M ( 2001): Sparse Bayesian learning and the relevance vector machine. J Mach Learn Res 1: 211-244.
46. Tripoliti EE, Fotiadis DI, Argyropoulou M, Manis G ( 2009): A six stage approach for the diagnosis of the Alzheimer's disease based on fMRI data. J Biomed Inform 43: 307-320.
47. Zeller JB, Herrmann MJ, Ehlis AC, Polak T, Fallgatter AJ ( 2010): Altered parietal brain oxygenation in Alzheimer's disease as assessed with near-infrared spectroscopy. Am J Geriatr Psychiatry 18( 5): 433-441.
48. Zhu CZ, Zang YF, Cao QJ, Yan CG, He Y, Jiang TZ, Sui MQ, Wang YF ( 2008): Fisher discriminative analysis of resting-state brain function for attention-deficit/hyperactivity disorder. NeuroImage 40( 1): 110-120.