메뉴 건너뛰기




Volumn 110, Issue 14, 2013, Pages 5546-5551

An algorithmic approach for breakage-fusion-bridge detection in tumor genomes

Author keywords

Bioinformatics; Cancer genomics; Combinatorial pattern matching; Gene amplification

Indexed keywords

ALGORITHM; ARTICLE; BREAKAGE FUSION BRIDGE; CANCER GENOMICS; COPY NUMBER VARIATION; GENE SEQUENCE; GENOMIC INSTABILITY; GENOMICS; MICROARRAY ANALYSIS; MOLECULAR EVOLUTION; PANCREAS CANCER; PRIORITY JOURNAL;

EID: 84875871987     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1220977110     Document Type: Article
Times cited : (45)

References (18)
  • 1
    • 79952284127 scopus 로고    scopus 로고
    • Hallmarks of cancer: The next generation
    • Hanahan D, Weinberg RA (2011) Hallmarks of cancer: The next generation. Cell 144(5):646-674.
    • (2011) Cell , vol.144 , Issue.5 , pp. 646-674
    • Hanahan, D.1    Weinberg, R.A.2
  • 3
    • 81955167432 scopus 로고    scopus 로고
    • DNA replication: Failures and inverted fusions
    • Carr AM, Paek AL, Weinert T (2011) DNA replication: Failures and inverted fusions. Semin Cell Dev Biol 22(8):866-874.
    • (2011) Semin Cell Dev Biol , vol.22 , Issue.8 , pp. 866-874
    • Carr, A.M.1    Paek, A.L.2    Weinert, T.3
  • 4
    • 0001294157 scopus 로고
    • The Stability of broken ends of chromosomes in Zea Mays
    • McClintock B (1941) The Stability of broken ends of chromosomes in Zea Mays. Genetics 26(2):234-282.
    • (1941) Genetics , vol.26 , Issue.2 , pp. 234-282
    • McClintock, B.1
  • 5
    • 4444226253 scopus 로고    scopus 로고
    • Cancer chromosomes in crisis
    • DePinho RA, Polyak K (2004) Cancer chromosomes in crisis. Nat Genet 36(9):932-934.
    • (2004) Nat Genet , vol.36 , Issue.9 , pp. 932-934
    • Depinho, R.A.1    Polyak, K.2
  • 6
    • 34548441098 scopus 로고    scopus 로고
    • Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution
    • Bignell GR, et al. (2007) Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution. Genome Res 17(9):1296-1303.
    • (2007) Genome Res , vol.17 , Issue.9 , pp. 1296-1303
    • Bignell, G.R.1
  • 7
    • 47549095371 scopus 로고    scopus 로고
    • The complicated copy number alterations in chromosome 7 of a lung cancer cell line is explained by a model based on repeated breakagefusion-bridge cycles
    • Kitada K, Yamasaki T (2008) The complicated copy number alterations in chromosome 7 of a lung cancer cell line is explained by a model based on repeated breakagefusion-bridge cycles. Cancer Genet Cytogenet 185(1):11-19.
    • (2008) Cancer Genet Cytogenet , vol.185 , Issue.1 , pp. 11-19
    • Kitada, K.1    Yamasaki, T.2
  • 8
    • 79955555195 scopus 로고    scopus 로고
    • Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes
    • Hillmer AM, et al. (2011) Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes. Genome Res 21(5):665-675.
    • (2011) Genome Res , vol.21 , Issue.5 , pp. 665-675
    • Hillmer, A.M.1
  • 9
    • 13944261238 scopus 로고    scopus 로고
    • An integrated mBAND and submegabase resolution tiling set (SMRT) CGH array analysis of focal amplification, microdeletions, and ladder structures consistent with breakage-fusion-bridge cycle events in osteosarcoma
    • Lim G, et al. (2005) An integrated mBAND and submegabase resolution tiling set (SMRT) CGH array analysis of focal amplification, microdeletions, and ladder structures consistent with breakage-fusion-bridge cycle events in osteosarcoma. Genes Chromosomes Cancer 42(4):392-403.
    • (2005) Genes Chromosomes Cancer , vol.42 , Issue.4 , pp. 392-403
    • Lim, G.1
  • 10
    • 33845291140 scopus 로고    scopus 로고
    • Novel patterns of genome rearrangement and their association with survival in breast cancer
    • Hicks J, et al. (2006) Novel patterns of genome rearrangement and their association with survival in breast cancer. Genome Res 16(12):1465-1479.
    • (2006) Genome Res , vol.16 , Issue.12 , pp. 1465-1479
    • Hicks, J.1
  • 11
    • 54249116805 scopus 로고    scopus 로고
    • Genomic signatures of chromosomal instability and osteosarcoma progression detected by high resolution array CGH and interphase FISH
    • Selvarajah S, et al. (2008) Genomic signatures of chromosomal instability and osteosarcoma progression detected by high resolution array CGH and interphase FISH. Cytogenet Genome Res 122(1):5-15.
    • (2008) Cytogenet Genome Res , vol.122 , Issue.1 , pp. 5-15
    • Selvarajah, S.1
  • 12
    • 84862510603 scopus 로고    scopus 로고
    • Combinatorics of the breakage-fusion-bridge mechanism
    • Kinsella M, Bafna V (2012) Combinatorics of the breakage-fusion-bridge mechanism. J Comput Biol 19(6):662-678.
    • (2012) J Comput Biol , vol.19 , Issue.6 , pp. 662-678
    • Kinsella, M.1    Bafna, V.2
  • 13
    • 77249123407 scopus 로고    scopus 로고
    • Signatures of mutation and selection in the cancer genome
    • Bignell GR, et al. (2010) Signatures of mutation and selection in the cancer genome. Nature 463(7283):893-898.
    • (2010) Nature , vol.463 , Issue.7283 , pp. 893-898
    • Bignell, G.R.1
  • 14
    • 78049380554 scopus 로고    scopus 로고
    • The patterns and dynamics of genomic instability in metastatic pancreatic cancer
    • Campbell PJ, et al. (2010) The patterns and dynamics of genomic instability in metastatic pancreatic cancer. Nature 467(7319):1109-1113.
    • (2010) Nature , vol.467 , Issue.7319 , pp. 1109-1113
    • Campbell, P.J.1
  • 15
    • 34347339520 scopus 로고    scopus 로고
    • Methods and strategies for analyzing copy number variation using DNA microarrays
    • Carter NP (2007) Methods and strategies for analyzing copy number variation using DNA microarrays. Nat Genet 39(7, Suppl):S16-S21.
    • (2007) Nat Genet , vol.39 , Issue.7 SUPPL.
    • Carter, N.P.1
  • 16
    • 58149218240 scopus 로고    scopus 로고
    • High-resolution mapping of copy-number alterations with massively parallel sequencing
    • Chiang DY, et al. (2009) High-resolution mapping of copy-number alterations with massively parallel sequencing. Nat Methods 6(1):99-103.
    • (2009) Nat Methods , vol.6 , Issue.1 , pp. 99-103
    • Chiang, D.Y.1
  • 17
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10(3):R25.
    • (2009) Genome Biol , vol.10 , Issue.3
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 18
    • 79551621409 scopus 로고    scopus 로고
    • ReadDepth: A parallel R package for detecting copy number alterations from short sequencing reads
    • Miller CA, Hampton O, Coarfa C, Milosavljevic A (2011) ReadDepth: a parallel R package for detecting copy number alterations from short sequencing reads. PLoS ONE 6(1):e16327.
    • (2011) PLoS ONE , vol.6 , Issue.1
    • Miller, C.A.1    Hampton, O.2    Coarfa, C.3    Milosavljevic, A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.