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Volumn 3, Issue JUN, 2012, Pages

Transcript profiling of different Arabidopsis thaliana ecotypes in response Totobacco etch potyvirus infection

Author keywords

Emerging viruses; Experimental evolution; Host virus interaction; Systems biology; Virus evolution

Indexed keywords


EID: 84875798287     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2012.00229     Document Type: Article
Times cited : (25)

References (43)
  • 2
    • 48749115009 scopus 로고    scopus 로고
    • Virus adaptation by manipulation of host's gene expression
    • doi:10.1371/journal.pone.0002397
    • Agudelo-Romero, P., Carbonell, P., Pérez-Amardor, M. A., and Elena, S. F. (2008b). Virus adaptation by manipulation of host's gene expression. PLoS ONE 3, e2397. doi:10.1371/journal.pone.0002397
    • (2008) PLoS ONE , vol.3
    • Agudelo-Romero, P.1    Carbonell, P.2    Pérez-Amardor, M.A.3    Elena, S.F.4
  • 3
    • 55549130497 scopus 로고    scopus 로고
    • Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during gemini virus infection
    • Ascencio-Ibáñez, J. T., Sozzani, R., Lee, T. J., Chu, T. M., Wolfinger, R. D., Cella, R., and Hanley-Bowdoin, L. (2008). Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during gemini virus infection. Plant Physiol. 148, 436-454.
    • (2008) Plant Physiol , vol.148 , pp. 436-454
    • Ascencio-Ibáñez, J.T.1    Sozzani, R.2    Lee, T.J.3    Chu, T.M.4    Wolfinger, R.D.5    Cella, R.6    Hanley-Bowdoin, L.7
  • 4
    • 47749122596 scopus 로고    scopus 로고
    • Altered gene expression changes in Arabidopsis leaf tissues and protoplasts in response to plum pox virus infection
    • doi:10.1186/1471-2164-9-325
    • Babu, M., Griffiths, J. S., Huang, T. S., and Wang, A. (2008). Altered gene expression changes in Arabidopsis leaf tissues and protoplasts in response to plum pox virus infection. BMC Genomics 9, 325. doi:10.1186/1471-2164-9-325
    • (2008) BMC Genomics , vol.9 , pp. 325
    • Babu, M.1    Griffiths, J.S.2    Huang, T.S.3    Wang, A.4
  • 5
    • 68049131345 scopus 로고    scopus 로고
    • Connecting viral with cellular interactomes
    • Bailer, S. M., and Haas, J. (2009). Connecting viral with cellular interactomes. Curr. Opin. Microbiol. 12, 453-459.
    • (2009) Curr. Opin. Microbiol , vol.12 , pp. 453-459
    • Bailer, S.M.1    Haas, J.2
  • 6
    • 79951939363 scopus 로고    scopus 로고
    • Virus infection suppresses Nicotiana benthamiana adaptive phenotypic plasticity
    • doi:10.1371/journal.pone.0017275
    • Bedhomme, S., and Elena, S. F. (2011). Virus infection suppresses Nicotiana benthamiana adaptive phenotypic plasticity. PLoS ONE 6, e17275. doi:10.1371/journal.pone.0017275
    • (2011) PLoS ONE , vol.6
    • Bedhomme, S.1    Elena, S.F.2
  • 7
    • 13244266980 scopus 로고    scopus 로고
    • Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics
    • Boudart, G., Jamet, E., Rossignol, M., Lafitte,C.,Borderies,G.,Jauneau,A., Esquerre-Tugaye, M. T., and Pont-Lezica, R. (2005). Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinfor-matics. Proteomics 5, 212-221.
    • (2005) Proteomics , vol.5 , pp. 212-221
    • Boudart, G.1    Jamet, E.2    Rossignol, M.3    Lafitte, C.4    Borderies, G.5    Jauneau, A.6    Esquerre-Tugaye, M.T.7    Pont-Lezica, R.8
  • 8
    • 0034928217 scopus 로고    scopus 로고
    • Growth stage-based phenotypic analysis of Arabidopsis:a model for high throughput functional genomics in plants
    • Boyes, C. D., Zayed, A. M., Ascenzi, R., McCaskill, A. J., Hoffman, N. E., Davis, K. R., and Görlach, J. (2001). Growth stage-based phenotypic analysis of Arabidopsis:a model for high throughput functional genomics in plants. Plant Cell 13, 1499-1510.
    • (2001) Plant Cell , vol.13 , pp. 1499-1510
    • Boyes, C.D.1    Zayed, A.M.2    Ascenzi, R.3    Mccaskill, A.J.4    Hoffman, N.E.5    Davis, K.R.6    Görlach, J.7
  • 9
    • 33947599981 scopus 로고    scopus 로고
    • An emerging model system: Arabidopsis as a viral host plant
    • Carr, T., and Whitham, S. A. (2007). An emerging model system: Arabidopsis as a viral host plant. Plant Cell Monogr. 7, 159-183.
    • (2007) Plant Cell Monogr , vol.7 , pp. 159-183
    • Carr, T.1    Whitham, S.A.2
  • 10
    • 0032130124 scopus 로고    scopus 로고
    • Viral invasion and host defense: strategies and counter-strategies
    • Carrington, J. C., and Whitham, S. A. (1998). Viral invasion and host defense: strategies and counter-strategies. Curr. Opin. Plant Biol. 1, 336-341.
    • (1998) Curr. Opin. Plant Biol , vol.1 , pp. 336-341
    • Carrington, J.C.1    Whitham, S.A.2
  • 11
    • 0005040086 scopus 로고
    • Point estimation of the parameter of the binomial distribution
    • Chew,V. (1971). Point estimation of the parameter of the binomial distribution. Am. Stat. 25, 47-50.
    • (1971) Am. Stat , vol.25 , pp. 47-50
    • Chew, V.1
  • 12
    • 0034602738 scopus 로고    scopus 로고
    • Cloning of the Arabidopsis RTM1 gene, which controls restriction of long-distance movement in tobacco etch virus
    • Chisholm, S. T., Mahajan, S. K., Whitham, S. A., Yamamoto, M. L., and Carrington, J. C. (2000). Cloning of the Arabidopsis RTM1 gene, which controls restriction of long-distance movement in tobacco etch virus. Proc. Natl. Acad. Sci. U.S.A. 97, 489-494.
    • (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 489-494
    • Chisholm, S.T.1    Mahajan, S.K.2    Whitham, S.A.3    Yamamoto, M.L.4    Carrington, J.C.5
  • 13
    • 85047683098 scopus 로고    scopus 로고
    • Arabidopsis RTM1 and RTM2 genes function in phloem to restrict long-distance movement of tobacco etch virus
    • Chisholm,S. T.,Parra,M.A.,Anderberg, R. J., and Carrington, J. C. (2001). Arabidopsis RTM1 and RTM2 genes function in phloem to restrict long-distance movement of tobacco etch virus. Plant Physiol. 127, 1667-1675.
    • (2001) Plant Physiol , vol.127 , pp. 1667-1675
    • Chisholm, S.T.1    Parra, M.A.2    Anderberg, R.J.3    Carrington, J.C.4
  • 15
    • 78449291951 scopus 로고    scopus 로고
    • A member of a new plant gene family encoding a meprin and TRAF homology (MATH) domain-containing protein is involved in restriction of long distance movement of plant viruses
    • Cosson, P., Sofer, L., Schurdi-Levraud, V., and Revers, F. (2010b). A member of a new plant gene family encoding a meprin and TRAF homology (MATH) domain-containing protein is involved in restriction of long distance movement of plant viruses. Plant Signal. Behav. 5, 1321-1323.
    • (2010) Plant Signal. Behav , vol.5 , pp. 1321-1323
    • Cosson, P.1    Sofer, L.2    Schurdi-Levraud, V.3    Revers, F.4
  • 16
    • 77954763024 scopus 로고    scopus 로고
    • Plant immunity: towards an integrated view of plant-pathogen interactions
    • Dodds, P. N., and Rathjen, J. P. (2010). Plant immunity: towards an integrated view of plant-pathogen interactions. Nat. Rev. Genet. 11, 539-548.
    • (2010) Nat. Rev. Genet , vol.11 , pp. 539-548
    • Dodds, P.N.1    Rathjen, J.P.2
  • 17
    • 79961167536 scopus 로고    scopus 로고
    • A systems biology approach to the evolution of plant-virus interactions
    • Elena, S. F., Carrera, J., and Rodrigo, G. (2011). A systems biology approach to the evolution of plant-virus interactions. Curr. Opin. Plant Biol. 14, 372-377.
    • (2011) Curr. Opin. Plant Biol , vol.14 , pp. 372-377
    • Elena, S.F.1    Carrera, J.2    Rodrigo, G.3
  • 18
    • 35848963195 scopus 로고    scopus 로고
    • Senescence-associated genes induced during compatible viral interactions with grapevine and Arabidopsis
    • Espinoza, C., Medina, C., Somerville, S., and Arce-Johnson, P. (2007). Senescence-associated genes induced during compatible viral interactions with grapevine and Arabidopsis. J. Exp. Bot. 58, 3197-3212.
    • (2007) J. Exp. Bot , vol.58 , pp. 3197-3212
    • Espinoza, C.1    Medina, C.2    Somerville, S.3    Arce-Johnson, P.4
  • 20
    • 0041766197 scopus 로고    scopus 로고
    • Tobacco mosaic virus induced alterations in the gene expression profile of Arabidopsis thaliana
    • Golem, S., and Culver, J. N. (2003). Tobacco mosaic virus induced alterations in the gene expression profile of Arabidopsis thaliana. Mol. Plant Microbe. Interact. 16, 681-688.
    • (2003) Mol. Plant Microbe. Interact , vol.16 , pp. 681-688
    • Golem, S.1    Culver, J.N.2
  • 22
    • 68949150692 scopus 로고    scopus 로고
    • Disease-specific expression of host genes during downy mildew infection of Arabidopsis
    • Huibers, R. P., De Jong, M., Dekter, R. W., and Van den Ackerveken, G. (2009). Disease-specific expression of host genes during downy mildew infection of Arabidopsis. Mol. Plant Microbe. Interact. 22, 1104-1115.
    • (2009) Mol. Plant Microbe. Interact , vol.22 , pp. 1104-1115
    • Huibers, R.P.1    De Jong, M.2    Dekter, R.W.3    Van Den Ackerveken, G.4
  • 23
    • 2342464855 scopus 로고    scopus 로고
    • Comparative analysis of expressed sequence tags in resistant and susceptible ecotypes of Arabidopsis thaliana infected with cucumber mosaic virus
    • Ishihara, T., Sakurai, N., Sekine, K. T., Hase, S., Ikegami, M., Shi-bata, D., and Takahashi, H. (2004). Comparative analysis of expressed sequence tags in resistant and sus-ceptible ecotypes of Arabidopsis thaliana infected with cucumber mosaic virus. Plant Cell Physiol. 45, 470-480.
    • (2004) Plant Cell Physiol , vol.45 , pp. 470-480
    • Ishihara, T.1    Sakurai, N.2    Sekine, K.T.3    Hase, S.4    Ikegami, M.5    Shibata, D.6    Takahashi, H.7
  • 24
    • 64249167913 scopus 로고    scopus 로고
    • GDSL lipase-like 1 regulates systemic resistance associated with ethylene signaling in Arabidopsis
    • Kwon, S. J., Jin, H. C., Lee, S., Nam, M. H., Chung, J. H., Kwon, S. I., Ryu, C. M., and Park, O. K. (2009). GDSL lipase-like 1 regulates systemic resistance associated with ethylene signaling in Arabidopsis. Plant J. 58, 235-245.
    • (2009) Plant J , vol.58 , pp. 235-245
    • Kwon, S.J.1    Jin, H.C.2    Lee, S.3    Nam, M.H.4    Chung, J.H.5    Kwon, S.I.6    Ryu, C.M.7    Park, O.K.8
  • 25
    • 77954326325 scopus 로고    scopus 로고
    • Adaptation of tobacco etch potyvirus to a susceptible ecotype of Arabidopsis thaliana capacitates it for systemic infection of resistant ecotypes
    • Lalic, J., Agudelo-Romero, P., Carrasco, P., and Elena, S. F. (2010). Adaptation of tobacco etch potyvirus to a susceptible ecotype of Arabidopsis thaliana capacitates it for systemic infection of resistant ecotypes. Philos. Trans. R. Soc. Lond. B Biol. Sci. 365, 1997-2008.
    • (2010) Philos. Trans. R. Soc. Lond. B Biol. Sci , vol.365 , pp. 1997-2008
    • Lalic, J.1    Agudelo-Romero, P.2    Carrasco, P.3    Elena, S.F.4
  • 26
    • 0000012426 scopus 로고
    • Recom-binant inbred lines for mapping RFLP and phenotypic markers in Arabidopsis thaliana
    • Lister, C., and Dean, C. (1993). Recom-binant inbred lines for mapping RFLP and phenotypic markers in Arabidopsis thaliana. Plant J. 4, 745-750.
    • (1993) Plant J , vol.4 , pp. 745-750
    • Lister, C.1    Dean, C.2
  • 27
    • 55549132299 scopus 로고    scopus 로고
    • Enhanced tolerance to oxidative stress in transgenic Arabidopsis plants expressing proteins of unknown function
    • Luhua, S., Ciftci-Yilmaz, S., Harper, J., Cushman, J., and Mittler, R. (2008). Enhanced tolerance to oxidative stress in transgenic Ara-bidopsis plants expressing proteins of unknown function. Plant Physiol. 148, 280-292.
    • (2008) Plant Physiol , vol.148 , pp. 280-292
    • Luhua, S.1    Ciftci-Yilmaz, S.2    Harper, J.3    Cushman, J.4    Mittler, R.5
  • 28
    • 0032052148 scopus 로고    scopus 로고
    • Identification and characterization of a locus (RTM1) that restricts long-distance movement of tobacco etch virus in Arabidopsis thaliana
    • Mahajan, S. K., Chisholm, S. T., Whitham, S. A., and Carrington, J. C. (1998). Identification and characterization of a locus (RTM1) that restricts long-distance movement of tobacco etch virus in Arabidopsis thaliana. Plant J. 14, 177-186.
    • (1998) Plant J , vol.14 , pp. 177-186
    • Mahajan, S.K.1    Chisholm, S.T.2    Whitham, S.A.3    Carrington, J.C.4
  • 29
    • 0036017852 scopus 로고    scopus 로고
    • The dialogue between viruses and hosts in compatible interactions
    • Maule, A., Leh, V., and Lederer, C. (2002). The dialogue between viruses and hosts in compatible interactions. Curr. Opin. Plant Biol. 5, 279-284.
    • (2002) Curr. Opin. Plant Biol , vol.5 , pp. 279-284
    • Maule, A.1    Leh, V.2    Lederer, C.3
  • 30
    • 0021890283 scopus 로고
    • Host life-history variation in response to parasitism
    • Michella, D. J. (1985). Host life-history variation in response to parasitism. Parasitology 90, 205-216.
    • (1985) Parasitology , vol.90 , pp. 205-216
    • Michella, D.J.1
  • 31
    • 50849090947 scopus 로고    scopus 로고
    • Host responses in life-history traits and tolerance to virus infection in Arabidopsis thaliana
    • doi:10.1371/journal.ppat.1000124
    • Pagán, I., Alonso-Blanco, C., and García-Arenal, F. (2008). Host responses in life-history traits and tolerance to virus infection in Arabidopsis thaliana. PLoS Pathog. 4, e1000124. doi:10.1371/journal.ppat.1000124
    • (2008) PLoS Pathog , vol.4
    • Pagán, I.1    Alonso-Blanco, C.2    García-Arenal, F.3
  • 32
    • 0001705695 scopus 로고    scopus 로고
    • On host life-history response to parasitism
    • Perrin, N., and Christe, P. (1996). On host life-history response to parasitism. Oikos 75, 317-320.
    • (1996) Oikos , vol.75 , pp. 317-320
    • Perrin, N.1    Christe, P.2
  • 33
    • 51749093103 scopus 로고    scopus 로고
    • Degradation of microRNAs by a family of exoribonucleases in Arabidopsis
    • Ramachandran,V.,and Chen,X. (2008). Degradation of microRNAs by a family of exoribonucleases in Arabidopsis. Science 321, 1490-1492.
    • (2008) Science , vol.321 , pp. 1490-1492
    • Ramachandran, V.1    Chen, X.2
  • 34
    • 84863732942 scopus 로고    scopus 로고
    • A meta-analysis reveals the commonalities and differences in Arabidopsis thaliana response to different viral pathogens
    • doi: 10.1371/journal.pone.0040526
    • Rodrigo, G., Carrera, J., Ruiz-Ferrer, V., Del Toro, F. J., Llave, C., Voin-net, O., and Elena, S. F. (2012). A meta-analysis reveals the commonalities and differences in Arabidopsis thaliana response to different viral pathogens. PLoS ONE. doi: 10.1371/journal.pone.0040526
    • (2012) PLoS ONE
    • Rodrigo, G.1    Carrera, J.2    Ruiz-Ferrer, V.3    Del Toro, F.J.4    Llave, C.5    Voinnet, O.6    Elena, S.F.7
  • 35
    • 0035110571 scopus 로고    scopus 로고
    • Unraveling regulatory networks in plant defense using microarrays
    • Rowland, O., and Jones, J. D. G. (2001). Unraveling regulatory networks in plant defense using microarrays. Genome Biol. 2, 1001.1-1001.3.
    • (2001) Genome Biol , vol.2 , pp. 10011-10013
    • Rowland, O.1    Jones, J.D.G.2
  • 36
    • 0016936143 scopus 로고
    • Life-history tactics: a review of the ideas
    • Stearns, S. C. (1976). Life-history tactics: a review of the ideas. Q. Rev. Biol. 51, 3-47.
    • (1976) Q. Rev. Biol , vol.51 , pp. 3-47
    • Stearns, S.C.1
  • 37
    • 0034103726 scopus 로고    scopus 로고
    • Arabidopsis RTM2 gene is necessary for specific restriction of tobacco etch virus and encodes an unusual small heat shock-like protein
    • Whitham, S. A., Anderberg, R. J., Chisholm, S. T., and Carrington, J. C. (2000). Arabidopsis RTM2 gene is necessary for specific restriction of tobacco etch virus and encodes an unusual small heat shock-like protein. Plant Cell 12, 569-582.
    • (2000) Plant Cell , vol.12 , pp. 569-582
    • Whitham, S.A.1    Anderberg, R.J.2    Chisholm, S.T.3    Carrington, J.C.4
  • 38
    • 0037261908 scopus 로고    scopus 로고
    • Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants
    • Whitham, S. A., Quan, S., Chang, H. S., Cooper, B., Estes, B., Zhu, T., Wang, X., and Hou, Y. M. (2003). Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants. Plant J. 33, 271-283.
    • (2003) Plant J , vol.33 , pp. 271-283
    • Whitham, S.A.1    Quan, S.2    Chang, H.S.3    Cooper, B.4    Estes, B.5    Zhu, T.6    Wang, X.7    Hou, Y.M.8
  • 39
    • 3042761274 scopus 로고    scopus 로고
    • Roles for host factors in plant viral pathogenicity
    • Whitham, S. A., and Wang, Y. (2004). Roles for host factors in plant viral pathogenicity. Curr. Opin. Plant Biol. 7, 365-371.
    • (2004) Curr. Opin. Plant Biol , vol.7 , pp. 365-371
    • Whitham, S.A.1    Wang, Y.2
  • 40
    • 0033582198 scopus 로고    scopus 로고
    • Selectable viruses and altered susceptibility mutants in Arabidopsis thaliana
    • Whitham, S. A., Yamamoto, M. L., and Carrington, J. C. (1999). Selectable viruses and altered susceptibility mutants in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 96, 772-777.
    • (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 772-777
    • Whitham, S.A.1    Yamamoto, M.L.2    Carrington, J.C.3
  • 41
    • 33750209744 scopus 로고    scopus 로고
    • Global impact: elucidating plant responses to viral infection
    • Whitham, S. A., Yang, C., and Goodin, M. M. (2006). Global impact: elucidating plant responses to viral infection. Mol. Plant Microbe. Interact. 19, 1207-1215.
    • (2006) Mol. Plant Microbe. Interact , vol.19 , pp. 1207-1215
    • Whitham, S.A.1    Yang, C.2    Goodin, M.M.3


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