Exploring the population genetics of genebank and historical landrace varieties

Genetic Resources and Crop Evolution

Volumn 59, Issue 6, 2012, Pages 1185-1199

  Hagenblad, Jenny ^a,d   Zie, Jenny ^a,e   Leino, Matti W ^b,c  

^a UPPSALA UNIVERSITY   (Sweden)

^b Swedish History Museum   (Sweden)

^c LINKÖPING UNIVERSITY   (Sweden)

^d NORWEGIAN UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Norway)

^e STOCKHOLM UNIVERSITY   (Sweden)

Author keywords

Conservation; Genetic diversity; Historical agriculture; Landrace; Population structure

Indexed keywords

BARLEY; CONSERVATION GENETICS; CULTIVATION; CULTURAL HERITAGE; GENETIC MARKER; GENETIC RESOURCE; GENETIC VARIATION; GENOTYPE; LEGUME; POPULATION STRUCTURE;

SWEDEN;

AVENA; HORDEUM; PISUM SATIVUM; SECALE CEREALE;

EID: 84864769464     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-011-9754-x     Document Type: Article

References (48)

1. Abdel-Ghani AH, Parzies HK, Omary A, Geiger HH (2004) Estimating the outcrossing rate of barley landraces and wild barley populations collected from ecologically different regions of Jordan. Theor Appl Genet 109: 588-595.
2. Atterberg A (1891) Neues System der Hafervarietäten nebst Beschreibung der nordischen Haferformen. Landw Versuchs-Stat 39: 171-204.
3. Camacho Villa TC, Maxted N, Scholten MA, Ford-Lloyd BV (2005) Defining and identifying crop landraces. Plant Gen Res 3: 373-384.
4. Chebotar S, Röder MS, Korzun V, Börner A (2002) Genetic integrity of ex situ genebank collections. Cell Mol Biol Lett 7: 437-444.
5. Chebotar S, Röder MS, Korzun V, Saal B, Weber WE, Börner A (2003) Molecular studies on genetic integrity of open-pollinating species rye (Secale cereale L.) after long-term genebank maintenance. Theor Appl Genet 107: 1469-1476.
6. Djè Y, Forcioli D, Ater M, Lefèbvre C, Vekemans X (1999) Assessing population genetic structure of sorghum landraces from North-western Morocco using allozyme and microsatellite markers. Theor Appl Genet 99: 157-163.
7. Dreisigacker S, Zhang P, Warburton ML, Skovmand B, Hoisington D, Melchinger AE (2005) Genetic diversity among and within CIMMYT wheat landrace accessions investigated with SSRs and implications for plant genetic resources management. Crop Sci 45: 653-661.
8. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14: 2611-2620.
9. Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
10. Fikiru E, Tesfaye K, Bekele E (2007) Genetic diversity and population structure of Ethiopian lentil (Lens culinaris Medikus) landraces as revealed by ISSR marker. Afr J Biotechnol 6: 1460-1468.
11. Harlan JR (1975) Our vanishing genetic resources. Science 188: 618-621.
12. Isaac AD, Muldoon M, Brown KA, Brown TA (2010) Genetic analysis of wheat landraces enables the location of the first agricultural sites in Italy to be identified. J Arch Sci 37: 950-956.
13. Jakobsson M, Rosenberg NA (2007) CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23: 1801-1806.
14. Jana S, Pietrzak LN (1988) Comparative assessment of genetic diversity in wild and primitive cultivated barley in a center of diversity. Genetics 119: 981-990.
15. Jensen NF (1961) Genetics and inheritance in oats: inheritance of morphological and other characters. In: Coffman FA (ed) Oats and oats improvement. American Society of Agronomy, Madison, WI, pp 125-136.
16. Jones H, Lister DL, Bower MA, Leigh FJ, Smith LMJ, Jones MK (2008a) Approaches and constraints of using existing landraces and extant plant material to understand agricultural spread in prehistory. Plant Gen Res 6: 98-112.
17. Jones H, Leigh FJ, Mackay I, Bower MA, Smith LM, Charles MP, Jones G, Jones MK, Brown TA, Powell W (2008b) Population-based resequencing reveals that the flowering time adaptation of cultivated barley originated east of the Fertile Crescent. Mol Biol Evol 25: 2211-2219.
18. Komatsuda T, Pourkheirandish M, He C, Azhaguvel P, Kanamori H, Perovic D, Stein N, Graner A, Wicker T, Tagiri A, Lundqvist U, Fujimura T, Matsuoka M, Matsumoto T, Yano M (2007) Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene. Proc Natl Acad Sci 104: 1424-1429.
19. Leino MW, Hagenblad J (2010) Nineteenth century seeds reveal the population genetics of landrace barley (Hordeum vulgare). Mol Biol Evol 27: 964-973.
20. Leino MW, Hagenblad J, Edqvist J, Karlsson Strese E-M (2009) DNA preservation and utility of a historic seed collection. Seed Sci Res 19: 125-135.
21. Li CD, Rossnagel BG, Scoles GJ (2000) The development of oat microsatellite markers and their use in identifying relationships among Avena species and oat cultivars. Theor Appl Genet 101: 1259-1268.
22. Lia VV, Confalonieri VA, Ratto N, Cámara Hernández JA, Miante Alzogaray AM, Poggio L, Brown TA (2007) Microsatellite typing of ancient maize: insights into the history of agriculture in Southern America. Proc R Soc B 274: 545-554.
23. Lister DL, Thaw S, Bower MA, Jones H, Charles MP, Jones G, Smith LMJ, Howe CJ, Brown TA, Jones MK (2009) Latitudinal variation in a photoperiod response gene in European barley: insight into the dynamics of agricultural spread from 'historic' specimens. J Arch Sci 36: 1092-1098.
24. Loridon K, McPhee K, Morin J, Dubreuil P, Pilet-Nayel ML, Aubert G, Rameau C, Baranger A, Coyne C, Lejeune-Hènaut Burstin J (2005) Microsatellite marker polymorphism and mapping in pea (Pisum sativum L.). Theor Appl Genet 111: 1022-1031.
25. Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci 70: 3321-3323.
26. Nordic Gene Bank (1999) Nordic Gene Bank 1979-1999. Nordic Gene Bank publications 35.
27. Olsson G (1997) Gamla lantsorter-utnyttjande och bevarande. In: Olsson G (ed) Den svenska växtförädlingens historia. KSLA, Stockholm, pp 121-130.
28. Ortiz R, Nurminiemi M, Madsen S, Rognli OA, Bjørnstad Å (2002) Cultivar diversity in Nordic spring barley breeding (1930-1991). Euphytica 123: 111-119.
29. Osvald H (1959) Åkerns nyttoväxter. Sv. litteratur, Stockholm.
30. Pal N, Sandhu JS, Domier LL, Kolb FL (2002) Development and characterization of microsatellite and RFLP-derived PCR markers in oat. Crop Sci 42: 912-918.
31. Papa R, Attene G, Barcaccia G, Ohgata A, Konishi T (1998) Genetic diversity in landrace populations of Hordeum vulgare L. from Sardinia, Italy, as revealed by RAPDs, isozymes and morphophenological traits. Plant Breed 117: 523-530.
32. Parzies HK, Spoor W, Ennos RA (2000) Genetic diversity of barley landrace accessions (Hordeum vulgare ssp. vulgare) conserved for different lengths of time in ex situ gene banks. Heredity 84: 476-486.
33. Perez de la Vega MP, Allard RW (1984) Mating system and genetic polymorphism in populations of Secale cereale and Secale vavilovii. Can J Genet Cytol 26: 308-317.
34. Persson K, von Bothmer R (2002) Genetic diversity amongst landraces of rye (Secale cereale L.) from northern Europe. Hereditas 136: 29-38.
35. Persson K, von Bothmer R, Gullord M, Gunnarsson E (2006) Phenotypic variation and relationships in landraces and improved varieties of rye (Secale cereale L.) from northern Europe. Gen Res Crop Evol 53: 857-866.
36. Polowick PL, Vandenberg A, Mahon JD (2002) Field assessment of outcrossing from transgenic pea (Pisum sativum L.) plants. Transgenic Res 11: 515-519.
37. Pressoir G, Berthaud J (2004) Patterns of population structure in maize landraces from the Central Valleys of Oaxaca in Mexico. Heredity 92: 88-94.
38. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
39. R Development Core Team (2007) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL http://www. R-project. org. ISBN 3-900051-07-0.
40. Rosenberg NA (2004) Distruct: a program for the graphical display of population structure. Mol Ecol Notes 4: 137-138.
41. Sanchez JJ, Goodman MM, Stuber CW (2000) Isozymatic and morphological diversity in the races of maize in Mexico. Econ Bot 54: 43-59.
42. Sonnante G, Stockton T, Nodari RO, Becerra Velásquez VL, Gepts P (1994) Evolution of genetic diversity during the domestication of common-bean (Phaseolus vulgaris L.). Theor Appl Genet 89: 629-635.
43. Struss D, Plieske J (1998) The use of microsatellite markers for detection of genetic diversity in barley populations. Theor Appl Genet 97: 308-315.
44. Sun CQ, Wang XK, Li ZC, Yoshimura A, Iwata N (2001) Comparison of the genetic diversity of common wild rice (Oryza rufipogon Griff.) and cultivated rice (O. sativa L.) using RFLP markers. Theor Appl Genet 102: 157-162.
45. Varshney RK, Marcel TC, Ramsay L, Russel J, Röder MS, Stein N, Waugh R, Langridge P, Niks RE, Graner A (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theor Appl Genet 114: 1091-1103.
46. Wright S (1951) The genetical structure of populations. Ann Eugen 15: 323-354.
47. Xu DH, Gai JY (2003) Genetic diversity of wild and cultivated soybeans growing in China revealed by RAPD analysis. Plant Breed 122: 503-506.
48. Zeven AC (1998) Landraces: a review of definitions and classifications. Euphytica 104: 127-139.