Morphological and molecular characterisation of Paralongidorus plesioepimikis n. sp. (Nematoda: Longidoridae) from southern Spain

Nematology

Volumn 15, Issue 3, 2013, Pages 363-378

  Palomares Rius, Juan E ^a   Cantalapiedra Navarrete, Carolina ^a   Gutiérrez Gutiérrez, Carlos ^a   Liébanas, Gracia ^b   Castillo, Pablo ^a  

^a INSTITUTO DE AGRICULTURA SOSTENIBLE   (Spain)

^b UNIVERSITY OF JAÉN   (Spain)

Author keywords

Description; Morphology; Morphometrics; Needle nematode; New species; Phylogeny; Taxonomy

Indexed keywords

BAYESIAN ANALYSIS; GENE; MOLECULAR ANALYSIS; MORPHOLOGY; NEMATODE; NEW SPECIES; RANGE EXPANSION; RHIZOSPHERE; SANDY SOIL; TREE;

SPAIN;

LONGIDORIDAE; LONGIDORUS; NEMATODA; PARALONGIDORUS; PINUS CEMBROIDES; PINUS PINEA;

EID: 84875662183     PISSN: 13885545     EISSN: 15685411     Source Type: Journal    
DOI: 10.1163/15685411-00002680     Document Type: Article

References (44)

1. Abolafia, J., Liébanas, G. & Peña-Santiago, R. (2002). Nematodes of the order Rhabditida from Andalucia Oriental, Spain. The subgenus Pseudacrobeles Steiner, 1938, with description of a new species. Journal of Nematode Morphology and Systematics 4, 137-154.
2. Andrássy, I. (1986). A new needle nematode species from Hungary, Paralongidorus rex sp. n. (Nematoda: Longidoridae). Állattani Közlemények 73, 115-118.
3. Arias, M. & Bravo, M.A. (1997). Identification of genera and species in the subfamily Longidorinae. In: Santos, M.S.N. de A., Abrantes, I.M. de O., Brown, D.J.F. & Lemos, R.M. (Eds). An introduction to virus vector nematodes and their associated virus. Instituto do Ambiente e Vida, Universidade de Coimbra, pp. 127-176.
4. Buckley, T.R., Simon, C., Shimodaira, H. & Chambers, G.K. (2001). Evaluation hypotheses on the origin and evolution of the New Zealand alpine cicadas (Maoricicada) using multiple-comparison tests of tree topology. Molecular Biology and Evolution 18, 223-234.
5. Castillo, P., Vovlas, N., Subbotin, S. & Troccoli, A. (2003). A new root-knot nematode, Meloidogyne baetica n. sp. (Nematoda: Heteroderidae), parasitizing wild olive in Southern Spain. Phytopathology 93, 1093-1102.
6. Coomans, A. (1985). A phylogenetic approach to the classification of the Longidoridae (Nematoda: Dorylaimida). Agriculture, Ecosystems & Environment 12, 335-354.
7. Coomans, A. (1996). Phylogeny of the Longidoridae. Russian Journal of Nematology 4, 51-60.
8. Coomans, A., Huys, R., Heyns, J. & Luc, M. (2001). Character analysis, phylogeny, and biogeography of the genus Xiphinema Cobb, 1913 (Nematoda: Longidoridae). Annales du Musée Royal de l'Afrique Centrale (Zoologie), Tervuren, Belgique 287, 239 pp.
9. Coomans, A., De Ley, I.T., Jiménez, L.A. & De Ley, P. (2012). Morphological, molecular characterisation and phylogenetic position of Longidorus mindanaoensis n. sp. (Nematoda: Longidoridae) from a Philippine Avicennia mangrove habitat. Nematology 14, 285-307.
10. Dalmasso, A. (1969). Étude anatomique et taxonomique des genres Xiphinema, Longidorus et Paralongidorus (Nematoda: Dorylaimidae). Mémoires du Muséum National d'Histoire Naturelle. Nouvelle série, Serie A. Zoologie LXI.
11. De Luca, F., Reyes, A., Grunder, J., Kunz, P., Agostinelli, A., De Giorgi, C. & Lamberti, F. (2004). Characterization and sequence variation in the rDNA region of six nematode species of the genus Longidorus (Nematoda). Journal of Nematology 36, 147-152.
12. Decraemer, W. & Coomans, A. (2007). Revision of some species of the genus Paralongidorus sensu Siddiqi et al. (1993), with a discussion on the relationships within the family Longidoridae (Nematoda: Dorylaimida). Nematology 9, 643-662.
13. Decraemer, W. & Robbins, R.T. (2007). The who, what and where of Longidoridae and Trichodoridae. Journal of Nematology 39, 295-297.
14. Escuer, M. & Arias, M. (1997). Paralongidorus iberis sp. n. and P. monegrensis sp. n. from Spain with a polytomous key to the species of the genus Paralongidorus Siddiqi, Hooper & Khan, 1963 (Nematoda: Longidoridae). Fundamental and Applied Nematology 20, 135-148.
15. Flegg, J.J.M. (1967). Extraction of Xiphinema and Longidorus species from soil by a modification of Cobb's decanting and sieving technique. Annals of Applied Biology 60, 429-437.
16. Gadagkar, S.R. & Kumar, S. (2005). Maximum likelihood outperforms maximum parsimony even when evolutionary rates are heterotachous. Molecular Biology and Evolution 22, 2139-2141.
17. Gutiérrez-Gutiérrez, C., Palomares-Rius, J.E., Cantalapiedra-Navarrete, C., Landa, B.B., Esmenjaud, D. & Castillo, P. (2010). Molecular analysis and comparative morphology to resolve a complex of cryptic Xiphinema species. Zoologica Scripta 39, 483-498.
18. Gutiérrez-Gutiérrez, C., Palomares-Rius, J., Cantalapiedra-Navarrete, C., Landa, B.B. & Castillo, P. (2011). Prevalence, polyphasic identification, and molecular phylogeny of dagger and needle nematodes infesting vineyards in southern Spain. European Journal of Plant Pathology 129, 427-453.
19. Hall, T.A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symposium Series 41, 95-98.
20. He, Y., Subbotin, S.A., Rubtsova, T.V., Lamberti, F., Brown, D.J.F. & Moens, M. (2005). A molecular phylogenetic approach to Longidoridae (Nematoda: Dorylaimida). Nematology 7, 111-124.
21. Holterman, M., Van Der Wurff, A., van den Elsen, S., van Megen, H., Bongers, T., Holovachov, O., Bakker, J. & Helder, J. (2006). Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown clades. Molecular Biology and Evolution 23, 1792-1800.
22. Huelsenbeck, J.P. & Ronquist, F. (2001). MrBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755.
23. Hunt, D.J. (1993). Aphelenchida, Longidoridae and Trichodoridae: their systematics and bionomics. Wallingford, UK, CABI Publishing.
24. Jacobs, P.J.F. & Heyns, J. (1982). Siddiqia species from sugar cane in Natal (Nematoda: Longidoridae). Phytophylactica 14, 169-178.
25. Jairajpuri, M.S. & Ahmad, W. (1992). Dorylaimida. Freeliving, predaceous and plant-parasitic nematodes. Leiden, The Netherlands, Brill Academic Publishers.
26. Loof, P.A.A. & Coomans, A. (1972). The oesophageal gland nuclei of Longidoridae (Dorylaimida). Nematologica 18, 213-233.
27. Luc, M. & Doucet, M.E. (1984). Description of Xiphidorus achalae n. sp. and proposal for a classification of Longidorids (Nematoda: Dorylaimoidea). Revue de Nématologie 7, 103-112.
28. Macara, A.M. (1988). Nematodos asociados a plantas forestales en Portugal. Boletín de Sanidad Vegetal, Plagas 14, 185-225.
29. Neilson, R., Ye, W., Oliveira, C.M.G., Hübschen, J., Robbins, R.T., Brown, D.J.F. & Szalanski, A.L. (2004). Phylogenetic relationships of Longidoridae species (Nematoda: Dorylaimida) from North America inferred from 18S rDNA sequence data. Helminthologia 41, 209-215.
30. Page, R.D.M. (1996). TREEVIEW: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12, 357-358.
31. Palomares-Rius, J.E., Subbotin, S.A., Landa, B.B., Vovlas, N. & Castillo, P. (2008). Description and molecular characterisation of Paralongidorus litoralis sp. n. and P. paramaximus Heyns, 1965 (Nematoda: Longidoridae) from Spain. Nematology 10, 87-101.
32. Pedram, M., Namjoo, S., Pourjam, E., Atighi, M.R., Cantalapiedra- Navarrete, C., Liébanas, G., Palomares-Rius, J.M. & Castillo, P. (2012). Molecular and morphological characterisation of Paralongidorus iranicus n. sp. and Paralongidorus bikanerensis (Lal & Mathur, 1987) Siddiqi, Baujard & Mounport, 1993 (Nematoda: Longidoridae) from Iran. Nematology 14, 427-443.
33. Posada, D. (2008). J Model Test: phylogenetic model averaging. Molecular Biology and Evolution 25, 1253-1256.
34. Robbins, R.T., Brown, D.J.F., Halbrendt, J.M. & Vrain, T.C. (1995). Compendium of Longidorus juvenile stages with observation on L. pisi, L. taniwha and L. diadecturus (Nematoda: Longidoridae). Systematic Parasitology 32, 33-52.
35. Robbins, R.T., Brown, D.J.F., Halbrendt, J.M. & Vrain, T.C. (1996). Compendium of juvenile stages of Xiphinema species (Nematoda: Longidoridae). Russian Journal of Nematology 4, 163-171.
36. Rubtsova, T.V., Subbotin, S., Brown, D.J.F. & Moens, M. (2001). Description of Longidorus sturhani sp. n. (Nematoda: Longidoridae) and molecular characterisation of several longidorid species from Western Europe. Russian Journal of Nematology 9, 127-136.
37. Seinhorst, J.W. (1966). Killing nematodes for taxonomic study with hot f.a. 4: 1. Nematologica 12, 178.
38. Siddiqi, M.R., Baujard, P. & Mounport, D. (1993). Description of Paratylenchus pernoxius sp. n. and Paralongidorus duncani sp. n. from Senegal, and synonymization of Longidoroides with Paralongidorus. Afro-Asian Journal of Nematology 3, 81-89.
39. Stirling, G.R. & McCulloch, J.S. (1984). Paralongidorus australis n. sp. (Nematoda: Longidoridae), causing poor growth of rice in Australia. Nematologica 30, 387-394.
40. Subbotin, S.A., Vovlas, N., Crozzoli, R., Sturhan, D., Lamberti, F., Moens, M. & Baldwin, J.G. (2005). Phylogeny of Criconematina Siddiqi, 1980 (Nematoda: Tylenchida) based on morphology and D2-D3 expansion segments of the 28SrRNA gene sequences with application of a secondary structure model. Nematology 7, 927-944.
41. Swofford, D.L. (2003). PAUP: phylogenetic analysis using parsimony (and other methods), version 4.0b 10. Sunderland, MA, USA, Sinauer Associates.
42. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. & Higgins, D.G. (1997). The Clustal-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25, 4876-4882.
43. Wang, X., Bosselut, N., Castagnone, Ch., Voisin, R., Abad, P. & Esmenjaud, D. (2003). Multiplex polymerase chain reaction identification of single individuals of the Longidorid nematodes Xiphinema index, X. diversicaudatum, X. vuittenezi, and X. italiae using specific primers from ribosomal genes. Phytopathology 93, 160-166.
44. Ye, W., Szalanski, A.L. & Robbins, R.T. (2004). Phylogenetic relationships and genetic variation in Longidorus and Xiphinema species (Nematoda: Longidoridae) using ITS1 sequences of nuclear ribosomal DNA. Journal of Nematology 36, 14-19.