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Volumn 132, Issue 11, 2013, Pages 2510-2519

Match criteria for human cell line authentication: Where do we draw the line?

(22)  Capes Davis, Amanda a   Reid, Yvonne A b   Kline, Margaret C c   Storts, Douglas R d   Strauss, Ethan d   Dirks, Wilhelm G e   Drexler, Hans G e   MacLeod, Roderick A F e   Sykes, Gregory b   Kohara, Arihiro f   Nakamura, Yukio g   Elmore, Eugene h   Nims, Raymond W i   Alston Roberts, Christine b   Barallon, Rita j   Los, Georgyi V k   Nardone, Roland M l   Price, Paul J m   Steuer, Anton n   Thomson, Jim j   more..


Author keywords

authentication; cross contamination; human cell lines; match criteria; STR profiling

Indexed keywords

AMELOGENIN;

EID: 84875613641     PISSN: 00207136     EISSN: 10970215     Source Type: Journal    
DOI: 10.1002/ijc.27931     Document Type: Article
Times cited : (141)

References (47)
  • 1
    • 0034576767 scopus 로고    scopus 로고
    • Human cancer cell lines: Fact and fantasy
    • Masters JR,. Human cancer cell lines: fact and fantasy. Nat Rev Mol Cell Biol 2000; 1: 233-6.
    • (2000) Nat Rev Mol Cell Biol , vol.1 , pp. 233-236
    • Masters, J.R.1
  • 2
    • 80051928451 scopus 로고    scopus 로고
    • Characterization and authentication of cancer cell lines: An overview
    • Reid YA,. Characterization and authentication of cancer cell lines: an overview. Methods Mol Biol 2011; 731: 35-43.
    • (2011) Methods Mol Biol , vol.731 , pp. 35-43
    • Reid, Y.A.1
  • 3
    • 36448955695 scopus 로고    scopus 로고
    • The costs of using unauthenticated, over-passaged cell lines: How much more data do we need?
    • Hughes P, Marshall D, Reid Y, et al. The costs of using unauthenticated, over-passaged cell lines: how much more data do we need? Biotechniques 2007; 43: 575-84.
    • (2007) Biotechniques , vol.43 , pp. 575-584
    • Hughes, P.1    Marshall, D.2    Reid, Y.3
  • 4
    • 84934437620 scopus 로고    scopus 로고
    • Cell culture contamination
    • Stacey GN,. Cell culture contamination. Methods Mol Biol 2011; 731: 79-91.
    • (2011) Methods Mol Biol , vol.731 , pp. 79-91
    • Stacey, G.N.1
  • 5
    • 0032880047 scopus 로고    scopus 로고
    • Widespread intraspecies cross-contamination of human tumor cell lines arising at source
    • MacLeod RA, Dirks WG, Matsuo Y, et al. Widespread intraspecies cross-contamination of human tumor cell lines arising at source. Int J Cancer 1999; 83: 555-63.
    • (1999) Int J Cancer , vol.83 , pp. 555-563
    • Macleod, R.A.1    Dirks, W.G.2    Matsuo, Y.3
  • 6
    • 77953419918 scopus 로고    scopus 로고
    • Check your cultures! A list of cross-contaminated or misidentified cell lines
    • Capes-Davis A, Theodosopoulos G, Atkin I, et al. Check your cultures! A list of cross-contaminated or misidentified cell lines. Int J Cancer 2010; 127: 1-8.
    • (2010) Int J Cancer , vol.127 , pp. 1-8
    • Capes-Davis, A.1    Theodosopoulos, G.2    Atkin, I.3
  • 7
    • 0034934077 scopus 로고    scopus 로고
    • Short tandem repeat profiling provides an international reference standard for human cell lines
    • Masters JR, Thomson JA, Daly-Burns B, et al. Short tandem repeat profiling provides an international reference standard for human cell lines. Proc Natl Acad Sci USA 2001; 98: 8012-7.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 8012-8017
    • Masters, J.R.1    Thomson, J.A.2    Daly-Burns, B.3
  • 8
    • 78649323066 scopus 로고    scopus 로고
    • Recommendation of short tandem repeat profiling for authenticating human cell lines, stem cells, and tissues
    • Barallon R, Bauer SR, Butler J, et al. Recommendation of short tandem repeat profiling for authenticating human cell lines, stem cells, and tissues. In Vitro Cell Dev Biol Anim 2010; 46: 727-32.
    • (2010) In Vitro Cell Dev Biol Anim , vol.46 , pp. 727-732
    • Barallon, R.1    Bauer, S.R.2    Butler, J.3
  • 9
    • 33644904034 scopus 로고    scopus 로고
    • Genetics and genomics of core short tandem repeat loci used in human identity testing
    • Butler JM,. Genetics and genomics of core short tandem repeat loci used in human identity testing. J Forensic Sci 2006; 51: 253-65.
    • (2006) J Forensic Sci , vol.51 , pp. 253-265
    • Butler, J.M.1
  • 10
    • 84934436230 scopus 로고    scopus 로고
    • Online verification of human cell line identity by STR DNA typing
    • Dirks WG, Drexler HG,. Online verification of human cell line identity by STR DNA typing. Methods Mol Biol 2011; 731: 45-55.
    • (2011) Methods Mol Biol , vol.731 , pp. 45-55
    • Dirks, W.G.1    Drexler, H.G.2
  • 11
    • 77952950455 scopus 로고    scopus 로고
    • Cell line misidentification: The beginning of the end
    • American Type Culture Collection Standards Development Organization Workgroup ASN-0002
    • American Type Culture Collection Standards Development Organization Workgroup ASN-0002. Cell line misidentification: the beginning of the end. Nat Rev Cancer 2010; 10: 441-8.
    • (2010) Nat Rev Cancer , vol.10 , pp. 441-448
  • 13
    • 73449117547 scopus 로고    scopus 로고
    • Cell line cross-contamination initiative: An interactive reference database of STR profiles covering common cancer cell lines
    • Dirks WG, MacLeod RA, Nakamura Y, et al. Cell line cross-contamination initiative: an interactive reference database of STR profiles covering common cancer cell lines. Int J Cancer 2010; 126: 303-4.
    • (2010) Int J Cancer , vol.126 , pp. 303-304
    • Dirks, W.G.1    Macleod, R.A.2    Nakamura, Y.3
  • 14
    • 0038560948 scopus 로고    scopus 로고
    • Cell line provenance
    • Freshney RI,. Cell line provenance. Cytotechnology 2002; 39: 55-67.
    • (2002) Cytotechnology , vol.39 , pp. 55-67
    • Freshney, R.I.1
  • 15
    • 57349103343 scopus 로고    scopus 로고
    • Deoxyribonucleic acid profiling analysis of 40 human thyroid cancer cell lines reveals cross-contamination resulting in cell line redundancy and misidentification
    • Schweppe RE, Klopper JP, Korch C, et al. Deoxyribonucleic acid profiling analysis of 40 human thyroid cancer cell lines reveals cross-contamination resulting in cell line redundancy and misidentification. J Clin Endocrinol Metab 2008; 93: 4331-41.
    • (2008) J Clin Endocrinol Metab , vol.93 , pp. 4331-4341
    • Schweppe, R.E.1    Klopper, J.P.2    Korch, C.3
  • 16
    • 66449108540 scopus 로고    scopus 로고
    • DNA fingerprinting of the NCI-60 cell line panel
    • Lorenzi PL, Reinhold WC, Varma S, et al. DNA fingerprinting of the NCI-60 cell line panel. Mol Cancer Ther 2009; 8: 713-24.
    • (2009) Mol Cancer Ther , vol.8 , pp. 713-724
    • Lorenzi, P.L.1    Reinhold, W.C.2    Varma, S.3
  • 17
    • 77949400528 scopus 로고    scopus 로고
    • Genotyping of 73 UM-SCC head and neck squamous cell carcinoma cell lines
    • Brenner JC, Graham MP, Kumar B, et al. Genotyping of 73 UM-SCC head and neck squamous cell carcinoma cell lines. Head Neck 2010; 32: 417-26.
    • (2010) Head Neck , vol.32 , pp. 417-426
    • Brenner, J.C.1    Graham, M.P.2    Kumar, B.3
  • 18
    • 80455136301 scopus 로고    scopus 로고
    • Assembly and initial characterization of a panel of 85 genomically validated cell lines from diverse head and neck tumor sites
    • Zhao M, Sano D, Pickering CR, et al. Assembly and initial characterization of a panel of 85 genomically validated cell lines from diverse head and neck tumor sites. Clin Cancer Res 2011; 17: 7248-64.
    • (2011) Clin Cancer Res , vol.17 , pp. 7248-7264
    • Zhao, M.1    Sano, D.2    Pickering, C.R.3
  • 19
    • 84865694064 scopus 로고    scopus 로고
    • DNA profiling analysis of endometrial and ovarian cell lines reveals misidentification, redundancy and contamination
    • Korch C, Spillman MA, Jackson TA, et al. DNA profiling analysis of endometrial and ovarian cell lines reveals misidentification, redundancy and contamination. Gynecol Oncol 2012; 127: 241-8.
    • (2012) Gynecol Oncol , vol.127 , pp. 241-248
    • Korch, C.1    Spillman, M.A.2    Jackson, T.A.3
  • 20
    • 84875604046 scopus 로고    scopus 로고
    • Identification of Human Cell Lines Project
    • National Institute of Standards and Technology.
    • National Institute of Standards and Technology. Identification of Human Cell Lines Project. Fed Regist 2012; 77: 5489-91.
    • (2012) Fed Regist , vol.77 , pp. 5489-5491
  • 21
    • 84855378559 scopus 로고    scopus 로고
    • Polymerase chain reaction-based species verification and microsatellite analysis for canine cell line validation
    • O'Donoghue LE, Rivest JP, Duval DL,. Polymerase chain reaction-based species verification and microsatellite analysis for canine cell line validation. J Vet Diagn Invest 2011; 23: 780-5.
    • (2011) J Vet Diagn Invest , vol.23 , pp. 780-785
    • O'Donoghue, L.E.1    Rivest, J.P.2    Duval, D.L.3
  • 22
    • 80355145647 scopus 로고    scopus 로고
    • Authentication of African green monkey cell lines using human short tandem repeat markers
    • Almeida JL, Hill CR, Cole KD,. Authentication of African green monkey cell lines using human short tandem repeat markers. BMC Biotechnol 2011; 11: 102.
    • (2011) BMC Biotechnol , vol.11 , pp. 102
    • Almeida, J.L.1    Hill, C.R.2    Cole, K.D.3
  • 23
    • 4444370801 scopus 로고    scopus 로고
    • Evaluation of allelic alterations in short tandem repeats in different kinds of solid tumors-possible pitfalls in forensic casework
    • Poetsch M, Petersmann A, Woenckhaus C, et al. Evaluation of allelic alterations in short tandem repeats in different kinds of solid tumors-possible pitfalls in forensic casework. Forensic Sci Int 2004; 145: 1-6.
    • (2004) Forensic Sci Int , vol.145 , pp. 1-6
    • Poetsch, M.1    Petersmann, A.2    Woenckhaus, C.3
  • 24
    • 1042299123 scopus 로고    scopus 로고
    • Evaluation of gastrointestinal cancer tissues as a source of genetic information for forensic investigations by using STRs
    • Vauhkonen H, Hedman M, Vauhkonen M, et al. Evaluation of gastrointestinal cancer tissues as a source of genetic information for forensic investigations by using STRs. Forensic Sci Int 2004; 139: 159-67.
    • (2004) Forensic Sci Int , vol.139 , pp. 159-167
    • Vauhkonen, H.1    Hedman, M.2    Vauhkonen, M.3
  • 25
    • 0031451136 scopus 로고    scopus 로고
    • Identity of original and late passage Dami megakaryocytes with HEL erythroleukemia cells shown by combined cytogenetics and DNA fingerprinting
    • MacLeod RA, Dirks WG, Reid YA, et al. Identity of original and late passage Dami megakaryocytes with HEL erythroleukemia cells shown by combined cytogenetics and DNA fingerprinting. Leukemia 1997; 11: 2032-8.
    • (1997) Leukemia , vol.11 , pp. 2032-2038
    • Macleod, R.A.1    Dirks, W.G.2    Reid, Y.A.3
  • 26
    • 67349204365 scopus 로고    scopus 로고
    • The use of short tandem repeat profiling to characterize human bladder cancer cell lines
    • Chiong E, Dadbin A, Harris LD, et al. The use of short tandem repeat profiling to characterize human bladder cancer cell lines. J Urol 2009; 181: 2737-48.
    • (2009) J Urol , vol.181 , pp. 2737-2748
    • Chiong, E.1    Dadbin, A.2    Harris, L.D.3
  • 27
    • 0026539896 scopus 로고
    • Differences in DNA fingerprints of continuous leukemia-lymphoma cell lines from different sources
    • Hane B, Tummler M, Jager K, et al. Differences in DNA fingerprints of continuous leukemia-lymphoma cell lines from different sources. Leukemia 1992; 6: 1129-33.
    • (1992) Leukemia , vol.6 , pp. 1129-1133
    • Hane, B.1    Tummler, M.2    Jager, K.3
  • 28
    • 14644407393 scopus 로고    scopus 로고
    • Cancer cell line identification by short tandem repeat profiling: Power and limitations
    • Parson W, Kirchebner R, Muhlmann R, et al. Cancer cell line identification by short tandem repeat profiling: power and limitations. FASEB J 2005; 19: 434-6.
    • (2005) FASEB J , vol.19 , pp. 434-436
    • Parson, W.1    Kirchebner, R.2    Muhlmann, R.3
  • 29
    • 0037328648 scopus 로고    scopus 로고
    • False leukemia-lymphoma cell lines: An update on over 500 cell lines
    • Drexler HG, Dirks WG, Matsuo Y, et al. False leukemia-lymphoma cell lines: an update on over 500 cell lines. Leukemia 2003; 17: 416-26.
    • (2003) Leukemia , vol.17 , pp. 416-426
    • Drexler, H.G.1    Dirks, W.G.2    Matsuo, Y.3
  • 30
    • 0000861540 scopus 로고    scopus 로고
    • Cell line individualization by STR multiplex system in the cell bank found cross-contamination between ECV304 and EJ-1/T24
    • Tanabe H, Takada Y, Minegishi D, et al. Cell line individualization by STR multiplex system in the cell bank found cross-contamination between ECV304 and EJ-1/T24. Tissue Culture Res Commun 1999; 18: 329-38.
    • (1999) Tissue Culture Res Commun , vol.18 , pp. 329-338
    • Tanabe, H.1    Takada, Y.2    Minegishi, D.3
  • 31
    • 84862203789 scopus 로고    scopus 로고
    • DNA fingerprinting of glioma cell lines and considerations on similarity measurements
    • Bady P, Diserens AC, Castella V, et al. DNA fingerprinting of glioma cell lines and considerations on similarity measurements. Neuro Oncol 2012; 14: 701-11.
    • (2012) Neuro Oncol , vol.14 , pp. 701-711
    • Bady, P.1    Diserens, A.C.2    Castella, V.3
  • 32
    • 84864117238 scopus 로고    scopus 로고
    • Detection algorithm for the validation of human cell lines
    • Eltonsy N, Gabisi V, Li X, et al. Detection algorithm for the validation of human cell lines. Int J Cancer 2012; 131: E1024-E1030.
    • (2012) Int J Cancer , vol.131
    • Eltonsy, N.1    Gabisi, V.2    Li, X.3
  • 33
    • 0025082480 scopus 로고
    • The similarity index and DNA fingerprinting
    • Lynch M,. The similarity index and DNA fingerprinting. Mol Biol Evol 1990; 7: 478-84.
    • (1990) Mol Biol Evol , vol.7 , pp. 478-484
    • Lynch, M.1
  • 34
    • 0002969802 scopus 로고
    • A method of establishing groups of equal amplitude in plant sociology based on similarity of species and its application to analyses of the vegetation on Danish commons
    • Sorensen T,. A method of establishing groups of equal amplitude in plant sociology based on similarity of species and its application to analyses of the vegetation on Danish commons. Biol Skr 1948; 5: 1-34.
    • (1948) Biol Skr , vol.5 , pp. 1-34
    • Sorensen, T.1
  • 35
    • 0026671281 scopus 로고
    • Application of highly polymorphic DNA markers to the identification of HeLa cell sublines
    • Kataoka E, Honma M, Ohnishi K, et al. Application of highly polymorphic DNA markers to the identification of HeLa cell sublines. In Vitro Cell Dev Biol 1992; 28A: 553-6.
    • (1992) In Vitro Cell Dev Biol , vol.28 A , pp. 553-556
    • Kataoka, E.1    Honma, M.2    Ohnishi, K.3
  • 36
    • 0033960641 scopus 로고    scopus 로고
    • Frequent microsatellite instability and BAX mutations in T cell acute lymphoblastic leukemia cell lines
    • Inoue K, Kohno T, Takakura S, et al. Frequent microsatellite instability and BAX mutations in T cell acute lymphoblastic leukemia cell lines. Leuk Res 2000; 24: 255-62.
    • (2000) Leuk Res , vol.24 , pp. 255-262
    • Inoue, K.1    Kohno, T.2    Takakura, S.3
  • 37
    • 0037376970 scopus 로고    scopus 로고
    • Frameshift mutations in caspase-5 and other target genes in leukemia and lymphoma cell lines having microsatellite instability
    • Takeuchi S, Takeuchi N, Fermin AC, et al. Frameshift mutations in caspase-5 and other target genes in leukemia and lymphoma cell lines having microsatellite instability. Leuk Res 2003; 27: 359-61.
    • (2003) Leuk Res , vol.27 , pp. 359-361
    • Takeuchi, S.1    Takeuchi, N.2    Fermin, A.C.3
  • 38
    • 0037402558 scopus 로고    scopus 로고
    • Identification of microsatellite instability and mismatch repair gene mutations in breast cancer cell lines
    • Seitz S, Wassmuth P, Plaschke J, et al. Identification of microsatellite instability and mismatch repair gene mutations in breast cancer cell lines. Genes Chromosomes Cancer 2003; 37: 29-35.
    • (2003) Genes Chromosomes Cancer , vol.37 , pp. 29-35
    • Seitz, S.1    Wassmuth, P.2    Plaschke, J.3
  • 39
    • 79961011472 scopus 로고    scopus 로고
    • Long-term cultured human neural stem cells undergo spontaneous transformation to tumor-initiating cells
    • Wu W, He Q, Li X, et al. Long-term cultured human neural stem cells undergo spontaneous transformation to tumor-initiating cells. Int J Biol Sci 2011; 7: 892-901.
    • (2011) Int J Biol Sci , vol.7 , pp. 892-901
    • Wu, W.1    He, Q.2    Li, X.3
  • 40
    • 84866009667 scopus 로고    scopus 로고
    • Spontaneous transformation of stem cells in vitro and the issue of cross-contamination
    • Torsvik A, Rosland GV, Bjerkvig R,. Spontaneous transformation of stem cells in vitro and the issue of cross-contamination. Int J Biol Sci 2012; 8: 1051-2.
    • (2012) Int J Biol Sci , vol.8 , pp. 1051-1052
    • Torsvik, A.1    Rosland, G.V.2    Bjerkvig, R.3
  • 41
    • 0032740238 scopus 로고    scopus 로고
    • TWGDAM validation of a nine-locus and a four-locus fluorescent STR multiplex system
    • Micka KA, Amiott EA, Hockenberry TL, et al. TWGDAM validation of a nine-locus and a four-locus fluorescent STR multiplex system. J Forensic Sci 1999; 44: 1243-57.
    • (1999) J Forensic Sci , vol.44 , pp. 1243-1257
    • Micka, K.A.1    Amiott, E.A.2    Hockenberry, T.L.3
  • 42
    • 79957647252 scopus 로고    scopus 로고
    • Concordance and population studies along with stutter and peak height ratio analysis for the PowerPlex (R) ESX 17 and ESI 17 Systems
    • Hill CR, Duewer DL, Kline MC, et al. Concordance and population studies along with stutter and peak height ratio analysis for the PowerPlex (R) ESX 17 and ESI 17 Systems. Forensic Sci Int Genet 2011; 5: 269-75.
    • (2011) Forensic Sci Int Genet , vol.5 , pp. 269-275
    • Hill, C.R.1    Duewer, D.L.2    Kline, M.C.3
  • 43
    • 12844262940 scopus 로고    scopus 로고
    • Development of a fluorescent multiplex assay for detection of MSI-High tumors
    • Bacher JW, Flanagan LA, Smalley RL, et al. Development of a fluorescent multiplex assay for detection of MSI-High tumors. Dis Markers 2004; 20: 237-50.
    • (2004) Dis Markers , vol.20 , pp. 237-250
    • Bacher, J.W.1    Flanagan, L.A.2    Smalley, R.L.3
  • 44
    • 84875609057 scopus 로고    scopus 로고
    • High-throughput SNP-based authentication of human cell lines
    • Castro F, Dirks WG, Fahnrich S, et al. High-throughput SNP-based authentication of human cell lines. Int J Cancer, Epub ahead of print.
    • Int J Cancer
    • Castro, F.1    Dirks, W.G.2    Fahnrich, S.3
  • 45
    • 0018950249 scopus 로고
    • PLC/PRF/5 (Alexander) hepatoma cell line: Further characterization and studies of infectivity
    • Daemer RJ, Feinstone SM, Alexander JJ, et al. PLC/PRF/5 (Alexander) hepatoma cell line: further characterization and studies of infectivity. Infect Immun 1980; 30: 607-11.
    • (1980) Infect Immun , vol.30 , pp. 607-611
    • Daemer, R.J.1    Feinstone, S.M.2    Alexander, J.J.3
  • 46
    • 67650252530 scopus 로고    scopus 로고
    • Molecular profiling of breast cancer cell lines defines relevant tumor models and provides a resource for cancer gene discovery
    • Kao J, Salari K, Bocanegra M, et al. Molecular profiling of breast cancer cell lines defines relevant tumor models and provides a resource for cancer gene discovery. PLoS One 2009; 4: e6146.
    • (2009) PLoS One , vol.4
    • Kao, J.1    Salari, K.2    Bocanegra, M.3
  • 47
    • 84865794714 scopus 로고    scopus 로고
    • Frequent Mutations in TP53 and CDKN2A Found by Next-Generation Sequencing of Head and Neck Cancer Cell Lines
    • Nichols AC, Yoo J, Palma DA, et al. Frequent Mutations in TP53 and CDKN2A Found by Next-Generation Sequencing of Head and Neck Cancer Cell Lines. Arch Otolaryngol Head Neck Surg 2012; 138: 732-9.
    • (2012) Arch Otolaryngol Head Neck Surg , vol.138 , pp. 732-739
    • Nichols, A.C.1    Yoo, J.2    Palma, D.A.3


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