메뉴 건너뛰기




Volumn 114, Issue 4, 2013, Pages 923-933

Tactic responses to pollutants and their potential to increase biodegradation efficiency

Author keywords

Biosensor; Chemoreceptor; Chemotaxis; Pollutant; Pseudomonas putida

Indexed keywords

AROMATIZATION; BACTERIA; BINDING ENERGY; BIOCHEMISTRY; BIODEGRADATION; CARBON; CRUDE OIL; HYDROCARBONS; LIGANDS; PHYSIOLOGY;

EID: 84875502368     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/jam.12076     Document Type: Review
Times cited : (33)

References (92)
  • 1
    • 34250747441 scopus 로고    scopus 로고
    • Origins and consequences of DNA damage in male germ cells
    • Aitken, R.J. and De Iuliis, G.N. (2007) Origins and consequences of DNA damage in male germ cells. Reprod Biomed Online 14, 727-733.
    • (2007) Reprod Biomed Online , vol.14 , pp. 727-733
    • Aitken, R.J.1    De Iuliis, G.N.2
  • 4
    • 77950629484 scopus 로고    scopus 로고
    • Metabolite stress and tolerance in the production of biofuels and chemicals: gene-expression-based systems analysis of butanol, butyrate, and acetate stresses in the anaerobe Clostridium acetobutylicum
    • Alsaker, K.V., Paredes, C. and Papoutsakis, E.T. (2010) Metabolite stress and tolerance in the production of biofuels and chemicals: gene-expression-based systems analysis of butanol, butyrate, and acetate stresses in the anaerobe Clostridium acetobutylicum. Biotechnol Bioeng 105, 1131-1147.
    • (2010) Biotechnol Bioeng , vol.105 , pp. 1131-1147
    • Alsaker, K.V.1    Paredes, C.2    Papoutsakis, E.T.3
  • 5
    • 38449095681 scopus 로고    scopus 로고
    • Identification of a malate chemoreceptor in Pseudomonas aeruginosa by screening for chemotaxis defects in an energy taxis-deficient mutant
    • Alvarez-Ortega, C. and Harwood, C.S. (2007) Identification of a malate chemoreceptor in Pseudomonas aeruginosa by screening for chemotaxis defects in an energy taxis-deficient mutant. Appl Environ Microbiol 73, 7793-7795.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 7793-7795
    • Alvarez-Ortega, C.1    Harwood, C.S.2
  • 6
    • 0031867547 scopus 로고    scopus 로고
    • A chromosomally based tod-luxCDABE whole-cell reporter for benzene, toluene, ethylbenzene, and xylene (BTEX) sensing
    • Applegate, B.M., Kehrmeyer, S.R. and Sayler, G.S. (1998) A chromosomally based tod-luxCDABE whole-cell reporter for benzene, toluene, ethylbenzene, and xylene (BTEX) sensing. Appl Environ Microbiol 64, 2730-2735.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 2730-2735
    • Applegate, B.M.1    Kehrmeyer, S.R.2    Sayler, G.S.3
  • 7
    • 0029895618 scopus 로고    scopus 로고
    • Escherichia coli exhibits negative chemotaxis in gradients of hydrogen peroxide, hypochlorite, and N-chlorotaurine: products of the respiratory burst of phagocytic cells
    • Benov, L. and Fridovich, I. (1996) Escherichia coli exhibits negative chemotaxis in gradients of hydrogen peroxide, hypochlorite, and N-chlorotaurine: products of the respiratory burst of phagocytic cells. Proc Natl Acad Sci USA 93, 4999-5002.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 4999-5002
    • Benov, L.1    Fridovich, I.2
  • 8
    • 34247899086 scopus 로고    scopus 로고
    • A Pseudomonas putida cardiolipin synthesis mutant exhibits increased sensitivity to drugs related to transport functionality
    • Bernal, P., Munoz-Rojas, J., Hurtado, A., Ramos, J.L. and Segura, A. (2007) A Pseudomonas putida cardiolipin synthesis mutant exhibits increased sensitivity to drugs related to transport functionality. Environ Microbiol 9, 1135-1145.
    • (2007) Environ Microbiol , vol.9 , pp. 1135-1145
    • Bernal, P.1    Munoz-Rojas, J.2    Hurtado, A.3    Ramos, J.L.4    Segura, A.5
  • 9
    • 1642389204 scopus 로고    scopus 로고
    • Chemotaxis-mediated biodegradation of cyclic nitramine explosives RDX, HMX, and CL-20 by Clostridium sp. EDB2
    • Bhushan, B., Halasz, A., Thiboutot, S., Ampleman, G. and Hawari, J. (2004) Chemotaxis-mediated biodegradation of cyclic nitramine explosives RDX, HMX, and CL-20 by Clostridium sp. EDB2. Biochem Biophys Res Commun 316, 816-821.
    • (2004) Biochem Biophys Res Commun , vol.316 , pp. 816-821
    • Bhushan, B.1    Halasz, A.2    Thiboutot, S.3    Ampleman, G.4    Hawari, J.5
  • 10
    • 0020693765 scopus 로고
    • Structure of the serine chemoreceptor in Escherichia coli
    • Boyd, A., Kendall, K. and Simon, M.I. (1983) Structure of the serine chemoreceptor in Escherichia coli. Nature 301, 623-626.
    • (1983) Nature , vol.301 , pp. 623-626
    • Boyd, A.1    Kendall, K.2    Simon, M.I.3
  • 11
    • 35348842602 scopus 로고    scopus 로고
    • Bacterial sensor kinase TodS interacts with agonistic and antagonistic signals
    • Busch, A., Lacal, J., Martos, A., Ramos, J.L. and Krell, T. (2007) Bacterial sensor kinase TodS interacts with agonistic and antagonistic signals. Proc Natl Acad Sci USA 104, 13774-13779.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 13774-13779
    • Busch, A.1    Lacal, J.2    Martos, A.3    Ramos, J.L.4    Krell, T.5
  • 12
    • 24944583078 scopus 로고    scopus 로고
    • Genetically modified organisms for the environment: stories of success and failure and what we have learned from them
    • Cases, I. and de Lorenzo, V. (2005) Genetically modified organisms for the environment: stories of success and failure and what we have learned from them. Int Microbiol 8, 213-222.
    • (2005) Int Microbiol , vol.8 , pp. 213-222
    • Cases, I.1    de Lorenzo, V.2
  • 13
    • 34248214645 scopus 로고    scopus 로고
    • Progress in the epidemiological understanding of gene-environment interactions in major diseases: cancer
    • Clavel, J. (2007) Progress in the epidemiological understanding of gene-environment interactions in major diseases: cancer. C R Biol 330, 306-317.
    • (2007) C R Biol , vol.330 , pp. 306-317
    • Clavel, J.1
  • 14
    • 37249007229 scopus 로고    scopus 로고
    • Application of luminescent biosensors for monitoring the degradation and toxicity of BTEX compounds in soils
    • Dawson, J.J., Iroegbu, C.O., Maciel, H. and Paton, G.I. (2008) Application of luminescent biosensors for monitoring the degradation and toxicity of BTEX compounds in soils. J Appl Microbiol 104, 141-151.
    • (2008) J Appl Microbiol , vol.104 , pp. 141-151
    • Dawson, J.J.1    Iroegbu, C.O.2    Maciel, H.3    Paton, G.I.4
  • 15
    • 70349452052 scopus 로고    scopus 로고
    • Structural and functional aspects of the multidrug efflux pump AcrB
    • Eicher, T., Brandstatter, L. and Pos, K.M. (2009) Structural and functional aspects of the multidrug efflux pump AcrB. Biol Chem 390, 693-699.
    • (2009) Biol Chem , vol.390 , pp. 693-699
    • Eicher, T.1    Brandstatter, L.2    Pos, K.M.3
  • 17
    • 34247154494 scopus 로고    scopus 로고
    • Motility and chemotaxis of Pseudomonas sp. B4 towards polychlorobiphenyls and chlorobenzoates
    • Gordillo, F., Chavez, F.P. and Jerez, C.A. (2007) Motility and chemotaxis of Pseudomonas sp. B4 towards polychlorobiphenyls and chlorobenzoates. FEMS Microbiol Ecol 60, 322-328.
    • (2007) FEMS Microbiol Ecol , vol.60 , pp. 322-328
    • Gordillo, F.1    Chavez, F.P.2    Jerez, C.A.3
  • 18
    • 0030864029 scopus 로고    scopus 로고
    • Chemotaxis of Pseudomonas spp. to the polyaromatic hydrocarbon naphthalene
    • Grimm, A.C. and Harwood, C.S. (1997) Chemotaxis of Pseudomonas spp. to the polyaromatic hydrocarbon naphthalene. Appl Environ Microbiol 63, 4111-4115.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 4111-4115
    • Grimm, A.C.1    Harwood, C.S.2
  • 19
    • 0032942360 scopus 로고    scopus 로고
    • NahY, a catabolic plasmid-encoded receptor required for chemotaxis of Pseudomonas putida to the aromatic hydrocarbon naphthalene
    • Grimm, A.C. and Harwood, C.S. (1999) NahY, a catabolic plasmid-encoded receptor required for chemotaxis of Pseudomonas putida to the aromatic hydrocarbon naphthalene. J Bacteriol 181, 3310-3316.
    • (1999) J Bacteriol , vol.181 , pp. 3310-3316
    • Grimm, A.C.1    Harwood, C.S.2
  • 20
    • 20144382425 scopus 로고    scopus 로고
    • The multidrug efflux regulator TtgV recognizes a wide range of structurally different effectors in solution and complexed with target DNA: evidence from isothermal titration calorimetry
    • Guazzaroni, M.E., Krell, T., Felipe, A., Ruiz, R., Meng, C., Zhang, X., Gallegos, M.T. and Ramos, J.L. (2005) The multidrug efflux regulator TtgV recognizes a wide range of structurally different effectors in solution and complexed with target DNA: evidence from isothermal titration calorimetry. J Biol Chem 280, 20887-20893.
    • (2005) J Biol Chem , vol.280 , pp. 20887-20893
    • Guazzaroni, M.E.1    Krell, T.2    Felipe, A.3    Ruiz, R.4    Meng, C.5    Zhang, X.6    Gallegos, M.T.7    Ramos, J.L.8
  • 21
    • 0028336799 scopus 로고
    • Cloning and characterization of genes encoding methyl-accepting chemotaxis proteins in Bacillus subtilis
    • Hanlon, D.W. and Ordal, G.W. (1994) Cloning and characterization of genes encoding methyl-accepting chemotaxis proteins in Bacillus subtilis. J Biol Chem 269, 14038-14046.
    • (1994) J Biol Chem , vol.269 , pp. 14038-14046
    • Hanlon, D.W.1    Ordal, G.W.2
  • 22
    • 78650302768 scopus 로고    scopus 로고
    • Bacterial chemotaxis along vapor-phase gradients of naphthalene
    • Hanzel, J., Harms, H. and Wick, L.Y. (2010) Bacterial chemotaxis along vapor-phase gradients of naphthalene. Environ Sci Technol 44, 9304-9310.
    • (2010) Environ Sci Technol , vol.44 , pp. 9304-9310
    • Hanzel, J.1    Harms, H.2    Wick, L.Y.3
  • 23
    • 37749029507 scopus 로고    scopus 로고
    • Bacterial chemoreceptors: high-performance signaling in networked arrays
    • Hazelbauer, G.L., Falke, J.J. and Parkinson, J.S. (2008) Bacterial chemoreceptors: high-performance signaling in networked arrays. Trends Biochem Sci 33, 9-19.
    • (2008) Trends Biochem Sci , vol.33 , pp. 9-19
    • Hazelbauer, G.L.1    Falke, J.J.2    Parkinson, J.S.3
  • 24
    • 0031930660 scopus 로고    scopus 로고
    • Bioremediation: towards a credible technology
    • Head, I.M. (1998) Bioremediation: towards a credible technology. Microbiology 144, 599-608.
    • (1998) Microbiology , vol.144 , pp. 599-608
    • Head, I.M.1
  • 25
    • 0345490758 scopus 로고    scopus 로고
    • The cis-trans isomerase of unsaturated fatty acids in Pseudomonas and Vibrio: biochemistry, molecular biology and physiological function of a unique stress adaptive mechanism
    • Heipieper, H.J., Meinhardt, F. and Segura, A. (2003) The cis-trans isomerase of unsaturated fatty acids in Pseudomonas and Vibrio: biochemistry, molecular biology and physiological function of a unique stress adaptive mechanism. FEMS Microbiol Lett 229, 1-7.
    • (2003) FEMS Microbiol Lett , vol.229 , pp. 1-7
    • Heipieper, H.J.1    Meinhardt, F.2    Segura, A.3
  • 27
    • 0032935779 scopus 로고    scopus 로고
    • Marinobacter aquaeolei sp. nov., a halophilic bacterium isolated from a Vietnamese oil-producing well
    • Huu, N.B., Denner, E.B., Ha, D.T., Wanner, G. and Stan-Lotter, H. (1999) Marinobacter aquaeolei sp. nov., a halophilic bacterium isolated from a Vietnamese oil-producing well. Int J Syst Bacteriol 49(Pt 2), 367-375.
    • (1999) Int J Syst Bacteriol , vol.49 , Issue.PART 2 , pp. 367-375
    • Huu, N.B.1    Denner, E.B.2    Ha, D.T.3    Wanner, G.4    Stan-Lotter, H.5
  • 28
    • 34247576793 scopus 로고    scopus 로고
    • Characterization of a pseudomonad 2-nitrobenzoate nitroreductase and its catabolic pathway-associated 2-hydroxylaminobenzoate mutase and a chemoreceptor involved in 2-nitrobenzoate chemotaxis
    • Iwaki, H., Muraki, T., Ishihara, S., Hasegawa, Y., Rankin, K.N., Sulea, T., Boyd, J. and Lau, P.C. (2007) Characterization of a pseudomonad 2-nitrobenzoate nitroreductase and its catabolic pathway-associated 2-hydroxylaminobenzoate mutase and a chemoreceptor involved in 2-nitrobenzoate chemotaxis. J Bacteriol 189, 3502-3514.
    • (2007) J Bacteriol , vol.189 , pp. 3502-3514
    • Iwaki, H.1    Muraki, T.2    Ishihara, S.3    Hasegawa, Y.4    Rankin, K.N.5    Sulea, T.6    Boyd, J.7    Lau, P.C.8
  • 29
    • 0033975882 scopus 로고    scopus 로고
    • Mutational analysis of ligand recognition by tcp, the citrate chemoreceptor of Salmonella enterica serovar typhimurium
    • Iwama, T., Nakao, K.I., Nakazato, H., Yamagata, S., Homma, M. and Kawagishi, I. (2000) Mutational analysis of ligand recognition by tcp, the citrate chemoreceptor of Salmonella enterica serovar typhimurium. J Bacteriol 182, 1437-1441.
    • (2000) J Bacteriol , vol.182 , pp. 1437-1441
    • Iwama, T.1    Nakao, K.I.2    Nakazato, H.3    Yamagata, S.4    Homma, M.5    Kawagishi, I.6
  • 30
    • 84862575212 scopus 로고    scopus 로고
    • Chemical effectors cause different motile behavior and deposition of bacteria in porous media
    • Jimenez-Sanchez, C., Wick, L.Y. and Ortega-Calvo, J.J. (2012) Chemical effectors cause different motile behavior and deposition of bacteria in porous media. Environ Sci Technol 46, 6790-6797.
    • (2012) Environ Sci Technol , vol.46 , pp. 6790-6797
    • Jimenez-Sanchez, C.1    Wick, L.Y.2    Ortega-Calvo, J.J.3
  • 31
    • 0027202361 scopus 로고
    • Ligand binding to the receptor domain regulates the ratio of kinase to phosphatase activities of the signaling domain of the hybrid Escherichia coli transmembrane receptor, Taz1
    • Jin, T. and Inouye, M. (1993) Ligand binding to the receptor domain regulates the ratio of kinase to phosphatase activities of the signaling domain of the hybrid Escherichia coli transmembrane receptor, Taz1. J Mol Biol 232, 484-492.
    • (1993) J Mol Biol , vol.232 , pp. 484-492
    • Jin, T.1    Inouye, M.2
  • 32
    • 37549014222 scopus 로고    scopus 로고
    • Use of a whole-cell biosensor to assess the bioavailability enhancement of aromatic hydrocarbon compounds by nonionic surfactants
    • Keane, A., Lau, P.C. and Ghoshal, S. (2008) Use of a whole-cell biosensor to assess the bioavailability enhancement of aromatic hydrocarbon compounds by nonionic surfactants. Biotechnol Bioeng 99, 86-98.
    • (2008) Biotechnol Bioeng , vol.99 , pp. 86-98
    • Keane, A.1    Lau, P.C.2    Ghoshal, S.3
  • 33
    • 10044223339 scopus 로고    scopus 로고
    • Construction and comparison of Escherichia coli whole-cell biosensors capable of detecting aromatic compounds
    • Kim, M.N., Park, H.H., Lim, W.K. and Shin, H.J. (2005) Construction and comparison of Escherichia coli whole-cell biosensors capable of detecting aromatic compounds. J Microbiol Methods 60, 235-245.
    • (2005) J Microbiol Methods , vol.60 , pp. 235-245
    • Kim, M.N.1    Park, H.H.2    Lim, W.K.3    Shin, H.J.4
  • 35
    • 0033982051 scopus 로고    scopus 로고
    • BasT, a membrane-bound transducer protein for amino acid detection in Halobacterium salinarum
    • Kokoeva, M.V. and Oesterhelt, D. (2000) BasT, a membrane-bound transducer protein for amino acid detection in Halobacterium salinarum. Mol Microbiol 35, 647-656.
    • (2000) Mol Microbiol , vol.35 , pp. 647-656
    • Kokoeva, M.V.1    Oesterhelt, D.2
  • 37
    • 33744460220 scopus 로고    scopus 로고
    • The TodS-TodT two-component regulatory system recognizes a wide range of effectors and works with DNA-bending proteins
    • Lacal, J., Busch, A., Guazzaroni, M.E., Krell, T. and Ramos, J.L. (2006) The TodS-TodT two-component regulatory system recognizes a wide range of effectors and works with DNA-bending proteins. Proc Natl Acad Sci USA 103, 8191-8196.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 8191-8196
    • Lacal, J.1    Busch, A.2    Guazzaroni, M.E.3    Krell, T.4    Ramos, J.L.5
  • 38
    • 77954933118 scopus 로고    scopus 로고
    • Identification of a chemoreceptor for tricarboxylic acid cycle intermediates: differential chemotactic response towards receptor ligands
    • Lacal, J., Alfonso, C., Liu, X., Parales, R.E., Morel, B., Conejero-Lara, F., Rivas, G., Duque, E. et al. (2010a) Identification of a chemoreceptor for tricarboxylic acid cycle intermediates: differential chemotactic response towards receptor ligands. J Biol Chem 285, 23126-23136.
    • (2010) J Biol Chem , vol.285 , pp. 23126-23136
    • Lacal, J.1    Alfonso, C.2    Liu, X.3    Parales, R.E.4    Morel, B.5    Conejero-Lara, F.6    Rivas, G.7    Duque, E.8
  • 39
    • 78249236863 scopus 로고    scopus 로고
    • Sensing of environmental signals: classification of chemoreceptors according to the size of their ligand binding regions
    • Lacal, J., Garcia-Fontana, C., Munoz-Martinez, F., Ramos, J.L. and Krell, T. (2010b) Sensing of environmental signals: classification of chemoreceptors according to the size of their ligand binding regions. Environ Microbiol 12, 2873-2884.
    • (2010) Environ Microbiol , vol.12 , pp. 2873-2884
    • Lacal, J.1    Garcia-Fontana, C.2    Munoz-Martinez, F.3    Ramos, J.L.4    Krell, T.5
  • 41
    • 0141564856 scopus 로고    scopus 로고
    • A strain isolated from gas oil-contaminated soil displays chemotaxis towards gas oil and hexadecane
    • Lanfranconi, M.P., Alvarez, H.M. and Studdert, C.A. (2003) A strain isolated from gas oil-contaminated soil displays chemotaxis towards gas oil and hexadecane. Environ Microbiol 5, 1002-1008.
    • (2003) Environ Microbiol , vol.5 , pp. 1002-1008
    • Lanfranconi, M.P.1    Alvarez, H.M.2    Studdert, C.A.3
  • 42
    • 84855895452 scopus 로고    scopus 로고
    • Engineering whole-cell biosensors with no antibiotic markers for monitoring aromatic compounds in the environment
    • de Las Heras, A. and de Lorenzo, V. (2012) Engineering whole-cell biosensors with no antibiotic markers for monitoring aromatic compounds in the environment. Methods Mol Biol 834, 261-281.
    • (2012) Methods Mol Biol , vol.834 , pp. 261-281
    • de Las Heras, A.1    de Lorenzo, V.2
  • 43
    • 0142136152 scopus 로고    scopus 로고
    • Bacterial chemotaxis to naphthalene desorbing from a nonaqueous liquid
    • Law, A.M. and Aitken, M.D. (2003) Bacterial chemotaxis to naphthalene desorbing from a nonaqueous liquid. Appl Environ Microbiol 69, 5968-5973.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5968-5973
    • Law, A.M.1    Aitken, M.D.2
  • 44
    • 29544445345 scopus 로고    scopus 로고
    • TNT and nitroaromatic compounds are chemoattractants for Burkholderia cepacia R34 and Burkholderia sp. strain DNT
    • Leungsakul, T., Keenan, B.G., Smets, B.F. and Wood, T.K. (2005) TNT and nitroaromatic compounds are chemoattractants for Burkholderia cepacia R34 and Burkholderia sp. strain DNT. Appl Microbiol Biotechnol 69, 321-325.
    • (2005) Appl Microbiol Biotechnol , vol.69 , pp. 321-325
    • Leungsakul, T.1    Keenan, B.G.2    Smets, B.F.3    Wood, T.K.4
  • 45
    • 39749198436 scopus 로고    scopus 로고
    • Construction and comparison of fluorescence and bioluminescence bacterial biosensors for the detection of bioavailable toluene and related compounds
    • Li, Y.F., Li, F.Y., Ho, C.L. and Liao, V.H. (2008) Construction and comparison of fluorescence and bioluminescence bacterial biosensors for the detection of bioavailable toluene and related compounds. Environ Pollut 152, 123-129.
    • (2008) Environ Pollut , vol.152 , pp. 123-129
    • Li, Y.F.1    Li, F.Y.2    Ho, C.L.3    Liao, V.H.4
  • 46
    • 38649104821 scopus 로고    scopus 로고
    • Chemotaxis of Escherichia coli to pyrimidines: a new role for the signal transducer tap
    • Liu, X. and Parales, R.E. (2008) Chemotaxis of Escherichia coli to pyrimidines: a new role for the signal transducer tap. J Bacteriol 190, 972-979.
    • (2008) J Bacteriol , vol.190 , pp. 972-979
    • Liu, X.1    Parales, R.E.2
  • 47
    • 69449089854 scopus 로고    scopus 로고
    • Bacterial chemotaxis to atrazine and related s-triazines
    • Liu, X. and Parales, R.E. (2009) Bacterial chemotaxis to atrazine and related s-triazines. Appl Environ Microbiol 75, 5481-5488.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5481-5488
    • Liu, X.1    Parales, R.E.2
  • 48
    • 0034663380 scopus 로고    scopus 로고
    • Bacterial chemotaxis enhances naphthalene degradation in a heterogeneous system
    • Marx, R.B. and Aitken, M.D. (2000a) Bacterial chemotaxis enhances naphthalene degradation in a heterogeneous system. Environ Sci Technol 34, 3379-3383.
    • (2000) Environ Sci Technol , vol.34 , pp. 3379-3383
    • Marx, R.B.1    Aitken, M.D.2
  • 49
    • 0034608067 scopus 로고    scopus 로고
    • A material-balance approach for modeling bacterial chemotaxis to a consumable substrate in the capillary assay
    • Marx, R.B. and Aitken, M.D. (2000b) A material-balance approach for modeling bacterial chemotaxis to a consumable substrate in the capillary assay. Biotechnol Bioeng 68, 308-315.
    • (2000) Biotechnol Bioeng , vol.68 , pp. 308-315
    • Marx, R.B.1    Aitken, M.D.2
  • 50
    • 0026315513 scopus 로고
    • Three-dimensional structures of the ligand-binding domain of the bacterial aspartate receptor with and without a ligand
    • Milburn, M.V., Prive, G.G., Milligan, D.L., Scott, W.G., Yeh, J., Jancarik, J., Koshland, D.E. Jr and Kim, S. H. (1991) Three-dimensional structures of the ligand-binding domain of the bacterial aspartate receptor with and without a ligand. Science 254, 1342-1347.
    • (1991) Science , vol.254 , pp. 1342-1347
    • Milburn, M.V.1    Prive, G.G.2    Milligan, D.L.3    Scott, W.G.4    Yeh, J.5    Jancarik, J.6    Koshland Jr., D.E.7    Kim, S.H.8
  • 51
    • 19944390242 scopus 로고    scopus 로고
    • Construction and evaluation of nagR-nagAa:lux fusion strains in biosensing for salicylic acid derivatives
    • Mitchell, R.J. and Gu, M.B. (2005) Construction and evaluation of nagR-nagAa:lux fusion strains in biosensing for salicylic acid derivatives. Appl Biochem Biotechnol 120, 183-198.
    • (2005) Appl Biochem Biotechnol , vol.120 , pp. 183-198
    • Mitchell, R.J.1    Gu, M.B.2
  • 52
    • 34948813038 scopus 로고    scopus 로고
    • Transcriptome analysis of Pseudomonas putida KT2440 harboring the completely sequenced IncP-7 plasmid pCAR1
    • Miyakoshi, M., Shintani, M., Terabayashi, T., Kai, S., Yamane, H. and Nojiri, H. (2007) Transcriptome analysis of Pseudomonas putida KT2440 harboring the completely sequenced IncP-7 plasmid pCAR1. J Bacteriol 189, 6849-6860.
    • (2007) J Bacteriol , vol.189 , pp. 6849-6860
    • Miyakoshi, M.1    Shintani, M.2    Terabayashi, T.3    Kai, S.4    Yamane, H.5    Nojiri, H.6
  • 53
    • 79959857770 scopus 로고    scopus 로고
    • The pGRT1 plasmid of Pseudomonas putida DOT-T1E encodes functions relevant for survival under harsh conditions in the environment
    • Molina, L., Duque, E., Gomez, M.J., Krell, T., Lacal, J., Garcia-Puente, A., Garcia, V., Matilla, M.A. et al. (2011) The pGRT1 plasmid of Pseudomonas putida DOT-T1E encodes functions relevant for survival under harsh conditions in the environment. Environ Microbiol 13, 2315-2327.
    • (2011) Environ Microbiol , vol.13 , pp. 2315-2327
    • Molina, L.1    Duque, E.2    Gomez, M.J.3    Krell, T.4    Lacal, J.5    Garcia-Puente, A.6    Garcia, V.7    Matilla, M.A.8
  • 54
    • 0344731433 scopus 로고    scopus 로고
    • Toluene metabolism by the solvent-tolerant Pseudomonas putida DOT-T1 strain, and its role in solvent impermeabilization
    • Mosqueda, G., Ramos-Gonzalez, M.I. and Ramos, J.L. (1999) Toluene metabolism by the solvent-tolerant Pseudomonas putida DOT-T1 strain, and its role in solvent impermeabilization. Gene 232, 69-76.
    • (1999) Gene , vol.232 , pp. 69-76
    • Mosqueda, G.1    Ramos-Gonzalez, M.I.2    Ramos, J.L.3
  • 55
    • 0023658327 scopus 로고
    • Additive and independent responses in a single receptor: aspartate and maltose stimuli on the tar protein
    • Mowbray, S.L. and Koshland, D.E. Jr (1987) Additive and independent responses in a single receptor: aspartate and maltose stimuli on the tar protein. Cell 50, 171-180.
    • (1987) Cell , vol.50 , pp. 171-180
    • Mowbray, S.L.1    Koshland Jr., D.E.2
  • 56
    • 0034883169 scopus 로고    scopus 로고
    • Contribution of environmental factors to the risk of male infertility
    • Oliva, A., Spira, A. and Multigner, L. (2001) Contribution of environmental factors to the risk of male infertility. Hum Reprod 16, 1768-1776.
    • (2001) Hum Reprod , vol.16 , pp. 1768-1776
    • Oliva, A.1    Spira, A.2    Multigner, L.3
  • 57
    • 0037721423 scopus 로고    scopus 로고
    • Chemotaxis in polycyclic aromatic hydrocarbon-degrading bacteria isolated from coal-tar- and oil-polluted rhizospheres
    • Ortega-Calvo, J.J., Marchenko, A.I., Vorobyov, A.V. and Borovick, R.V. (2003) Chemotaxis in polycyclic aromatic hydrocarbon-degrading bacteria isolated from coal-tar- and oil-polluted rhizospheres. FEMS Microbiol Ecol 44, 373-381.
    • (2003) FEMS Microbiol Ecol , vol.44 , pp. 373-381
    • Ortega-Calvo, J.J.1    Marchenko, A.I.2    Vorobyov, A.V.3    Borovick, R.V.4
  • 58
    • 60149096935 scopus 로고    scopus 로고
    • Integrative approaches for assessing the ecological sustainability of in situ bioremediation
    • Pandey, J., Chauhan, A. and Jain, R.K. (2009) Integrative approaches for assessing the ecological sustainability of in situ bioremediation. FEMS Microbiol Rev 33, 324-375.
    • (2009) FEMS Microbiol Rev , vol.33 , pp. 324-375
    • Pandey, J.1    Chauhan, A.2    Jain, R.K.3
  • 59
    • 84856402991 scopus 로고    scopus 로고
    • Chemotaxis of Burkholderia sp. strain SJ98 towards chloronitroaromatic compounds that it can metabolise
    • Pandey, J., Sharma, N.K., Khan, F., Ghosh, A., Oakeshott, J.G., Jain, R.K. and Pandey, G. (2012) Chemotaxis of Burkholderia sp. strain SJ98 towards chloronitroaromatic compounds that it can metabolise. BMC Microbiol 12, 19.
    • (2012) BMC Microbiol , vol.12 , pp. 19
    • Pandey, J.1    Sharma, N.K.2    Khan, F.3    Ghosh, A.4    Oakeshott, J.G.5    Jain, R.K.6    Pandey, G.7
  • 60
    • 0346500428 scopus 로고    scopus 로고
    • Nitrobenzoates and aminobenzoates are chemoattractants for Pseudomonas strains
    • Parales, R.E. (2004) Nitrobenzoates and aminobenzoates are chemoattractants for Pseudomonas strains. Appl Environ Microbiol 70, 285-292.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 285-292
    • Parales, R.E.1
  • 61
    • 0033823554 scopus 로고    scopus 로고
    • Toluene-degrading bacteria are chemotactic towards the environmental pollutants benzene, toluene, and trichloroethylene
    • Parales, R.E., Ditty, J.L. and Harwood, C.S. (2000) Toluene-degrading bacteria are chemotactic towards the environmental pollutants benzene, toluene, and trichloroethylene. Appl Environ Microbiol 66, 4098-4104.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4098-4104
    • Parales, R.E.1    Ditty, J.L.2    Harwood, C.S.3
  • 63
    • 33748311918 scopus 로고    scopus 로고
    • Chemotaxis of Ralstonia sp. SJ98 towards p-nitrophenol in soil
    • Paul, D., Singh, R. and Jain, R.K. (2006) Chemotaxis of Ralstonia sp. SJ98 towards p-nitrophenol in soil. Environ Microbiol 8, 1797-1804.
    • (2006) Environ Microbiol , vol.8 , pp. 1797-1804
    • Paul, D.1    Singh, R.2    Jain, R.K.3
  • 64
    • 0037142393 scopus 로고    scopus 로고
    • Quantitative analysis of experiments on bacterial chemotaxis to naphthalene
    • Pedit, J.A., Marx, R.B., Miller, C.T. and Aitken, M.D. (2002) Quantitative analysis of experiments on bacterial chemotaxis to naphthalene. Biotechnol Bioeng 78, 626-634.
    • (2002) Biotechnol Bioeng , vol.78 , pp. 626-634
    • Pedit, J.A.1    Marx, R.B.2    Miller, C.T.3    Aitken, M.D.4
  • 65
    • 77953580341 scopus 로고    scopus 로고
    • Cyclopropane fatty acids are involved in organic solvent tolerance but not in acid stress resistance in Pseudomonas putida DOT-T1E
    • Pini, C.V., Bernal, P., Godoy, P., Ramos, J.L. and Segura, A. (2009) Cyclopropane fatty acids are involved in organic solvent tolerance but not in acid stress resistance in Pseudomonas putida DOT-T1E. Microb Biotechnol 2, 253-261.
    • (2009) Microb Biotechnol , vol.2 , pp. 253-261
    • Pini, C.V.1    Bernal, P.2    Godoy, P.3    Ramos, J.L.4    Segura, A.5
  • 67
    • 34248577225 scopus 로고    scopus 로고
    • The ttgGHI solvent efflux pump operon of Pseudomonas putida DOT-T1E is located on a large self-transmissible plasmid
    • Rodriguez-Herva, J.J., Garcia, V., Hurtado, A., Segura, A. and Ramos, J.L. (2007) The ttgGHI solvent efflux pump operon of Pseudomonas putida DOT-T1E is located on a large self-transmissible plasmid. Environ Microbiol 9, 1550-1561.
    • (2007) Environ Microbiol , vol.9 , pp. 1550-1561
    • Rodriguez-Herva, J.J.1    Garcia, V.2    Hurtado, A.3    Segura, A.4    Ramos, J.L.5
  • 68
    • 0034976599 scopus 로고    scopus 로고
    • Three efflux pumps are required to provide efficient tolerance to toluene in Pseudomonas putida DOT-T1E
    • Rojas, A., Duque, E., Mosqueda, G., Golden, G., Hurtado, A., Ramos, J.L. and Segura, A. (2001) Three efflux pumps are required to provide efficient tolerance to toluene in Pseudomonas putida DOT-T1E. J Bacteriol 183, 3967-3973.
    • (2001) J Bacteriol , vol.183 , pp. 3967-3973
    • Rojas, A.1    Duque, E.2    Mosqueda, G.3    Golden, G.4    Hurtado, A.5    Ramos, J.L.6    Segura, A.7
  • 69
    • 34249942470 scopus 로고    scopus 로고
    • Biosensing environmental pollution
    • Ron, E.Z. (2007) Biosensing environmental pollution. Curr Opin Biotechnol 18, 252-256.
    • (2007) Curr Opin Biotechnol , vol.18 , pp. 252-256
    • Ron, E.Z.1
  • 70
    • 0034607110 scopus 로고    scopus 로고
    • Chemotaxis of a Ralstonia sp. SJ98 toward different nitroaromatic compounds and their degradation
    • Samanta, S.K., Bhushan, B., Chauhan, A. and Jain, R.K. (2000) Chemotaxis of a Ralstonia sp. SJ98 toward different nitroaromatic compounds and their degradation. Biochem Biophys Res Commun 269, 117-123.
    • (2000) Biochem Biophys Res Commun , vol.269 , pp. 117-123
    • Samanta, S.K.1    Bhushan, B.2    Chauhan, A.3    Jain, R.K.4
  • 71
    • 77954691487 scopus 로고    scopus 로고
    • Bacterial energy taxis: a global strategy?
    • Schweinitzer, T. and Josenhans, C. (2010) Bacterial energy taxis: a global strategy? Arch Microbiol 192, 507-520.
    • (2010) Arch Microbiol , vol.192 , pp. 507-520
    • Schweinitzer, T.1    Josenhans, C.2
  • 72
    • 23444445194 scopus 로고    scopus 로고
    • Freeze-dried recombinant bacteria for on-site detection of phenolic compounds by color change
    • Shin, H.J., Park, H.H. and Lim, W.K. (2005) Freeze-dried recombinant bacteria for on-site detection of phenolic compounds by color change. J Biotechnol 119, 36-43.
    • (2005) J Biotechnol , vol.119 , pp. 36-43
    • Shin, H.J.1    Park, H.H.2    Lim, W.K.3
  • 74
    • 84862023815 scopus 로고    scopus 로고
    • Study of the TmoS/TmoT two-component system: towards the functional characterization of the family of TodS/TodT like systems
    • Silva-Jimenez, H., Garcia-Fontana, C., Cadirci, B.H., Ramos-Gonzalez, M.I., Ramos, J.L. and Krell, T. (2012) Study of the TmoS/TmoT two-component system: towards the functional characterization of the family of TodS/TodT like systems. Microb Biotechnol 5, 489-500.
    • (2012) Microb Biotechnol , vol.5 , pp. 489-500
    • Silva-Jimenez, H.1    Garcia-Fontana, C.2    Cadirci, B.H.3    Ramos-Gonzalez, M.I.4    Ramos, J.L.5    Krell, T.6
  • 75
    • 12344264558 scopus 로고    scopus 로고
    • Perspectives and vision for strain selection in bioaugmentation
    • Singer, A.C., van der Gast, C.J. and Thompson, I.P. (2005) Perspectives and vision for strain selection in bioaugmentation. Trends Biotechnol 23, 74-77.
    • (2005) Trends Biotechnol , vol.23 , pp. 74-77
    • Singer, A.C.1    van der Gast, C.J.2    Thompson, I.P.3
  • 76
    • 33744718828 scopus 로고    scopus 로고
    • Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase
    • Sota, M., Yano, H., Ono, A., Miyazaki, R., Ishii, H., Genka, H., Top, E.M. and Tsuda, M. (2006) Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase. J Bacteriol 188, 4057-4067.
    • (2006) J Bacteriol , vol.188 , pp. 4057-4067
    • Sota, M.1    Yano, H.2    Ono, A.3    Miyazaki, R.4    Ishii, H.5    Genka, H.6    Top, E.M.7    Tsuda, M.8
  • 77
    • 0030840353 scopus 로고    scopus 로고
    • Genetic identification of chemotactic transducers for amino acids in Pseudomonas aeruginosa
    • Taguchi, K., Fukutomi, H., Kuroda, A., Kato, J. and Ohtake, H. (1997) Genetic identification of chemotactic transducers for amino acids in Pseudomonas aeruginosa. Microbiology 143(Pt 10), 3223-3229.
    • (1997) Microbiology , vol.143 , Issue.PART 10 , pp. 3223-3229
    • Taguchi, K.1    Fukutomi, H.2    Kuroda, A.3    Kato, J.4    Ohtake, H.5
  • 78
    • 34548356914 scopus 로고    scopus 로고
    • Aer on the inside looking out: paradigm for a PAS-HAMP role in sensing oxygen, redox and energy
    • Taylor, B.L. (2007) Aer on the inside looking out: paradigm for a PAS-HAMP role in sensing oxygen, redox and energy. Mol Microbiol 65, 1415-1424.
    • (2007) Mol Microbiol , vol.65 , pp. 1415-1424
    • Taylor, B.L.1
  • 79
    • 33644841410 scopus 로고    scopus 로고
    • A new green fluorescent protein-based bacterial biosensor for analysing phenanthrene fluxes
    • Tecon, R., Wells, M. and van der Meer, J.R. (2006) A new green fluorescent protein-based bacterial biosensor for analysing phenanthrene fluxes. Environ Microbiol 8, 697-708.
    • (2006) Environ Microbiol , vol.8 , pp. 697-708
    • Tecon, R.1    Wells, M.2    van der Meer, J.R.3
  • 80
    • 0036937672 scopus 로고    scopus 로고
    • Pseudomonas putida: a cosmopolitan opportunist par excellence
    • Timmis, K.N. (2002) Pseudomonas putida: a cosmopolitan opportunist par excellence. Environ Microbiol 4, 779-781.
    • (2002) Environ Microbiol , vol.4 , pp. 779-781
    • Timmis, K.N.1
  • 81
    • 78649369728 scopus 로고    scopus 로고
    • Tolerance of Pseudomonas pseudoalcaligenes KF707 to metals, polychlorobiphenyls and chlorobenzoates: effects on chemotaxis-, biofilm- and planktonic-grown cells
    • Tremaroli, V., Vacchi Suzzi, C., Fedi, S., Ceri, H., Zannoni, D. and Turner, R.J. (2010) Tolerance of Pseudomonas pseudoalcaligenes KF707 to metals, polychlorobiphenyls and chlorobenzoates: effects on chemotaxis-, biofilm- and planktonic-grown cells. FEMS Microbiol Ecol 74, 291-301.
    • (2010) FEMS Microbiol Ecol , vol.74 , pp. 291-301
    • Tremaroli, V.1    Vacchi Suzzi, C.2    Fedi, S.3    Ceri, H.4    Zannoni, D.5    Turner, R.J.6
  • 82
    • 0016258213 scopus 로고
    • Negative chemotaxis in Escherichia coli
    • Tso, W.-W. and Adler, J. (1974) Negative chemotaxis in Escherichia coli. J Bacteriol 118, 560-576.
    • (1974) J Bacteriol , vol.118 , pp. 560-576
    • Tso, W.-W.1    Adler, J.2
  • 83
    • 0025073507 scopus 로고
    • Naphthalene degrading genes on plasmid NAH7 are on a defective transposon
    • Tsuda, M. and Iino, T. (1990) Naphthalene degrading genes on plasmid NAH7 are on a defective transposon. Mol Gen Genet 223, 33-39.
    • (1990) Mol Gen Genet , vol.223 , pp. 33-39
    • Tsuda, M.1    Iino, T.2
  • 84
    • 15244348157 scopus 로고    scopus 로고
    • Chemotaxis of Pseudomonas stutzeri OX1 and Burkholderia cepacia G4 toward chlorinated ethenes
    • Vardar, G., Barbieri, P. and Wood, T.K. (2005) Chemotaxis of Pseudomonas stutzeri OX1 and Burkholderia cepacia G4 toward chlorinated ethenes. Appl Microbiol Biotechnol 66, 696-701.
    • (2005) Appl Microbiol Biotechnol , vol.66 , pp. 696-701
    • Vardar, G.1    Barbieri, P.2    Wood, T.K.3
  • 85
    • 39649099967 scopus 로고    scopus 로고
    • Chemoeffectors decrease the deposition of chemotactic bacteria during transport in porous media
    • Velasco-Casal, P., Wick, L.Y. and Ortega-Calvo, J.J. (2008) Chemoeffectors decrease the deposition of chemotactic bacteria during transport in porous media. Environ Sci Technol 42, 1131-1137.
    • (2008) Environ Sci Technol , vol.42 , pp. 1131-1137
    • Velasco-Casal, P.1    Wick, L.Y.2    Ortega-Calvo, J.J.3
  • 86
    • 0024237631 scopus 로고
    • Sugar and signal-transducer binding sites of the Escherichia coli galactose chemoreceptor protein
    • Vyas, N.K., Vyas, M.N. and Quiocho, F.A. (1988) Sugar and signal-transducer binding sites of the Escherichia coli galactose chemoreceptor protein. Science 242, 1290-1295.
    • (1988) Science , vol.242 , pp. 1290-1295
    • Vyas, N.K.1    Vyas, M.N.2    Quiocho, F.A.3
  • 87
    • 10044252242 scopus 로고    scopus 로고
    • Making sense of it all: bacterial chemotaxis
    • Wadhams, G.H. and Armitage, J.P. (2004) Making sense of it all: bacterial chemotaxis. Nat Rev Mol Cell Biol 5, 1024-1037.
    • (2004) Nat Rev Mol Cell Biol , vol.5 , pp. 1024-1037
    • Wadhams, G.H.1    Armitage, J.P.2
  • 88
    • 68049131607 scopus 로고    scopus 로고
    • Transverse bacterial migration induced by chemotaxis in a packed column with structured physical heterogeneity
    • Wang, M. and Ford, R.M. (2009) Transverse bacterial migration induced by chemotaxis in a packed column with structured physical heterogeneity. Environ Sci Technol 43, 5921-5927.
    • (2009) Environ Sci Technol , vol.43 , pp. 5921-5927
    • Wang, M.1    Ford, R.M.2
  • 89
    • 77956634301 scopus 로고    scopus 로고
    • Origins and diversification of a complex signal transduction system in prokaryotes
    • Wuichet, K. and Zhulin, I.B. (2010) Origins and diversification of a complex signal transduction system in prokaryotes. Sci Signal 3, ra50.
    • (2010) Sci Signal , vol.3
    • Wuichet, K.1    Zhulin, I.B.2
  • 90
    • 34247358195 scopus 로고    scopus 로고
    • Complete sequence determination combined with analysis of transposition/site-specific recombination events to explain genetic organization of IncP-7 TOL plasmid pWW53 and related mobile genetic elements
    • Yano, H., Garruto, C.E., Sota, M., Ohtsubo, Y., Nagata, Y., Zylstra, G.J., Williams, P.A. and Tsuda, M. (2007) Complete sequence determination combined with analysis of transposition/site-specific recombination events to explain genetic organization of IncP-7 TOL plasmid pWW53 and related mobile genetic elements. J Mol Biol 369, 11-26.
    • (2007) J Mol Biol , vol.369 , pp. 11-26
    • Yano, H.1    Garruto, C.E.2    Sota, M.3    Ohtsubo, Y.4    Nagata, Y.5    Zylstra, G.J.6    Williams, P.A.7    Tsuda, M.8
  • 91
    • 34250857579 scopus 로고    scopus 로고
    • The design and development of Tar-EnvZ chimeric receptors
    • Yoshida, T., Phadtare, S. and Inouye, M. (2007) The design and development of Tar-EnvZ chimeric receptors. Methods Enzymol 423, 166-183.
    • (2007) Methods Enzymol , vol.423 , pp. 166-183
    • Yoshida, T.1    Phadtare, S.2    Inouye, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.