Pituitary adenoma nitroproteomics: Current status and perspectives

Oxidative Medicine and Cellular Longevity

Volumn , Issue , 2013, Pages

  Zhan, Xianquan ^a   Wang, Xiaowei ^a   Desiderio, Dominic M ^b  

^a CENTRAL SOUTH UNIVERSITY   (China)

^b UNIVERSITY OF TENNESSEE COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; BIOINFORMATICS ANALYSIS; BIOLOGICAL FUNCTIONS; FUTURE PERSPECTIVES; PITUITARY ADENOMA; SIGNALING PATHWAYS; STRUCTURAL BIOLOGY; TYROSINE NITRATION;

AMINO ACIDS; BIOINFORMATICS; BIOPHYSICS; DRUG THERAPY; MASS SPECTROMETRY; NITRATION; PROTEINS; X RAY CRYSTALLOGRAPHY;

TUMORS;

3 NITROTYROSINE; ENDOTHELIAL NITRIC OXIDE SYNTHASE; INDUCIBLE NITRIC OXIDE SYNTHASE; 3-NITROTYROSINE; DRUG DERIVATIVE; NITRITE; REACTIVE NITROGEN SPECIES; TYROSINE;

AMINO ACID SEQUENCE; BIOINFORMATICS; CARCINOGENESIS; HUMAN; HYPOPHYSIS ADENOMA; MASS SPECTROMETRY; NITRATION; NITRATIVE STRESS; OXIDATIVE STRESS; PATHOPHYSIOLOGY; PROTEIN ANALYSIS; PROTEIN STRUCTURE; PROTEOMICS; QUANTITATIVE ANALYSIS; REVIEW; SIGNAL TRANSDUCTION; X RAY CRYSTALLOGRAPHY; BIOLOGY; CHEMISTRY; HYPOPHYSIS TUMOR; METABOLISM; PATHOLOGY;

COMPUTATIONAL BIOLOGY; HUMANS; METABOLIC NETWORKS AND PATHWAYS; NITRITES; OXIDATIVE STRESS; PITUITARY NEOPLASMS; PROTEOMICS; REACTIVE NITROGEN SPECIES; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TYROSINE;

EID: 84875484278     PISSN: 19420900     EISSN: 19420994     Source Type: Journal    
DOI: 10.1155/2013/580710     Document Type: Review

References (74)

1. Scaloni A., Dalle-Donne I., Scaloni A., Butterfield D. A., Mass spectrometry approaches for the molecular characterization of oxidatively/ nitrosatively modified proteins. Redox Proteomics: From Protein Modification to Cellular Dysfunction and Diseases 2006 Hoboken, NJ, USA John Wiley & Sons 59 100
2. Khan J., Brennan D. M., Bradley N., Gao B., Bruckdorfer R., Jacobs M., 3-nitrotyrosine in the proteins of human plasma determined by an ELISA method. Biochemical Journal 1998 330 part 2 795 801 2-s2.0-0032030763 (Pubitemid 28111980)
3. Zhan X., Desiderio D. M., The human pituitary nitroproteome: detection of nitrotyrosyl-proteins with two-dimensional Western blotting, and amino acid sequence determination with mass spectrometry. Biochemical and Biophysical Research Communications 2004 325 4 1180 1186 2-s2.0-8844244036 10.1016/j.bbrc.2004.10.169 (Pubitemid 39535887)
4. Zhan X., Desiderio D. M., Nitroproteins from a human pituitary adenoma tissue discovered with a nitrotyrosine affinity column and tandem mass spectrometry. Analytical Biochemistry 2006 354 2 279 289 2-s2.0-33745218278 10.1016/j.ab.2006.05.024
5. Lloyd R. V., Jin L., Qian X., Zhang S., Scheithauer B. W., Nitric oxide synthase in the human pituitary gland. The American Journal of Pathology 1995 146 1 86 94
6. Ueta Y., Levy A., Powell M. P., Lightman S. L., Kinoshita Y., Yokota A., Shibuya I., Yamashita H., Neuronal nitric oxide synthase gene expression in human pituitary tumours: a possible association with somatotroph adenomas and growth hormone-releasing hormone gene expression. Clinical Endocrinology 1998 49 1 29 38 2-s2.0-0031819640 10.1046/j.1365-2265.1998.00399.x (Pubitemid 28338040)
7. Ceccatelli S., Hulting A. L., Zhang X., Gustafsson L., Villar M., Hokfelt T., Nitric oxide synthase in the rat anterior pituitary gland and the role of nitric oxide in regulation of luteinizing hormone secretion. Proceedings of the National Academy of Sciences of the United States of America 1993 90 23 11292 11296 2-s2.0-0027504107 10.1073/pnas.90.23.11292 (Pubitemid 23354415)
8. Bocca L., Valenti S., Cuttica C. M., Spaziante R., Giordano G., Giusti M., Nitric oxide biphasically modulates GH secretion in cultured cells of GH-secreting human pituitary adenomas. Minerva Endocrinologica 2000 25 3-4 55 59 2-s2.0-0034278874
9. Cuttica C. M., Giusti M., Bocca L., Sessarego P., de Martini D., Valenti S., Spaziante R., Giordano G., Nitric oxide modulates in vivo and in vitro growth hormone release in acromegaly. Neuroendocrinology 1997 66 6 426 431 2-s2.0-0030828108 (Pubitemid 27500902)
10. Pinilla L., Tena-Sempere M., Aguilar E., Nitric oxide stimulates growth hormone secretion in vitro through a calcium- and cyclic guanosine monophosptrate-independent mechanism. Hormone Research 1999 51 5 242 247 2-s2.0-0032698396 10.1159/000023378 (Pubitemid 29515742)
11. Duvilanski B. H., Zambruno C., Seilicovich A., Pisera D., Lasaga M., Diaz M. D. C., Belova N., Rettori V., Mccann S. M., Role of nitric oxide in control of prolactin release by the adenohypophysis. Proceedings of the National Academy of Sciences of the United States of America 1995 92 1 170 174 2-s2.0-0028898439 10.1073/pnas.92.1.170
12. Riedel W., Role of nitric oxide in the control of the hypothalamic-pituitary-adrenocortical axis. Zeitschrift für Rheumatologie 2000 59 supplement 2 36 42
13. McCann S. M., Karanth S., Mastronardi C. A., Dees W. L., Childs G., Miller B., Sower S., Yu W. H., Control of gonadotropin secretion by follicle-stimulating hormone-releasing factor, luteinizing hormone-releasing hormone, and leptin. Archives of Medical Research 2001 32 6 476 485 2-s2.0-0035671781 10.1016/S0188-4409(01)00343-5 (Pubitemid 34031740)
14. McCann S. M., Mastronardi C., Walczewska A., Karanth S., Rettori V., Yu W. H., The role of nitric oxide (NO) in control of LHRH release that mediates gonadotropin release and sexual behavior. Current Pharmaceutical Design 2003 9 5 381 390 2-s2.0-0037239602 10.2174/1381612033391766 (Pubitemid 36131730)
15. Pinilla L., González L. C., Tena-Sempere M., Bellido C., Aguilar E., Effects of systemic blockade of nitric oxide synthases on pulsatile LH, prolactin, and GH secretion in adult male rats. Hormone Research 2001 55 5 229 235 2-s2.0-0035217087 10.1159/000050001 (Pubitemid 33153191)
16. Zhan X., Desiderio D. M., Linear ion-trap mass spectrometric characterization of human pituitary nitrotyrosine-containing proteins. International Journal of Mass Spectrometry 2007 259 1-3 96 104 2-s2.0-33750631763 10.1016/j.ijms.2006.06.009
17. Haddad I. Y., Pataki G., Hu P., Galliani C., Beckman J. S., Matalon S., Quantitation of nitrotyrosine levels in lung sections of patients and animals with acute lung injury. Journal of Clinical Investigation 1994 94 6 2407 2413 2-s2.0-0028007172 (Pubitemid 24379615)
18. Shigenaga M. K., Lee H. H., Blount B. C., Christen S., Shigeno E. T., Yip H., Ames B. N., Inflammation and NOx-induced nitration: assay for 3-nitrotyrosine by HPLC with electrochemical detection. Proceedings of the National Academy of Sciences of the United States of America 1997 94 7 3211 3216 2-s2.0-0030905171
19. Torreilles J., Romestand B., In vitro production of peroxynitrite by haemocytes from marine bivalves: C-ELISA determination of 3-nitrotyrosine level in plasma proteins from Mytilus galloprovincialis and Crassostrea gigas. BMC Immunology 2001 2 1, article 1 2-s2.0-0642369792
20. Aulak K. S., Miyagi M., Yan L., West K. A., Massillon D., Crabb J. W., Stuehr D. J., Proteomic method identifies proteins nitrated in vivo during inflammatory challenge. Proceedings of the National Academy of Sciences of the United States of America 2001 98 21 12056 12061 2-s2.0-0035834101 10.1073/pnas.221269198 (Pubitemid 32959825)
21. Miyagi M., Sakaguchi H., Darrow R. M., Yan L., West K. A., Aulak K. S., Stuehr D. J., Hollyfield J. G., Organisciak D. T., Crabb J. W., Evidence that light modulates protein nitration in rat retina. Molecular & Cellular Proteomics 2002 1 4 293 303 2-s2.0-0036549782
22. Zhan X., Desiderio D. M., Mass spectrometric identification of in vivo nitrotyrosine sites in the human pituitary tumor proteome. Methods in Molecular Biology 2009 566 137 163 2-s2.0-77449083738 10.1007/978-1-59745-562-6-10
23. Zhan X., Desiderio D. M., Signaling pathway networks mined from human pituitary adenoma proteomics data. BMC Medical Genomics 2010 3 article 13 2-s2.0-77951557934 10.1186/1755-8794-3-13
24. Zhan X., Desiderio D. M., MALDI-induced fragmentation of leucine enkephalin, nitro-Tyr-leucine enkaphalin, and d5-Phe-nitro-Tyr-leucine enkephalin. International Journal of Mass Spectrometry 2009 287 1-3 77 86 2-s2.0-70349747174 10.1016/j.ijms.2008.08.020
25. Dalle-Donne I., Scaloni A., Giustarini D., Cavarra E., Tell G., Lungarella G., Colombo R., Rossi R., Milzani A., Proteins as biomarkers of oxidattiv/e/nitrosative stress in diseases: the contribution of redox proteomics. Mass Spectrometry Reviews 2005 24 1 55 99 2-s2.0-12444296480 10.1002/mas.20006 (Pubitemid 40146422)
26. Dalle-Donne I., Scaloni A., Butterfield D. A., Redox Proteomics: From Protein Modifications to Cellular Dysfunction and Diseases 2006 Hobokin, NJ, USA John Wiley & Sons
27. Yeo W. S., Lee S. J., Lee J. R., Kim K. P., Nitrosative protein tyrosine modifications: biochemistry and functional significance. BMB Reports 2008 41 3 194 203
28. Kuncewicz T., Sheta E. A., Goldknopf I. L., Kone B. C., Proteomic analysis of S-nitrosylated proteins in mesangial cells. Molecular & Cellular Proteomics 2003 2 3 156 163 2-s2.0-1042275741
29. Zhan X., Desiderio D. M., Walkers J. M., Detection of nitrotyrosine-containing proteins. The Protein Protocols Handbook 2009 3rd New York, NY, USA Humana Press 1467 1490
30. Martínez-Ruiz A., Lamas S., S-nitrosylation: a potential new paradigm in signal transduction. Cardiovascular Research 2004 62 1 43 52 (Pubitemid 38326810)
31. Halliwell B., Zhao K., Whiteman M., Nitric oxide and peroxynitrite. The ugly, the uglier and the not so good: a personal view of recent controversies. Free Radical Research 1999 31 6 651 669 2-s2.0-0032715834
32. Yee C. S., Seyedsayamdost M. R., Chang M. C. Y., Nocera D. G., Stubbe J., Generation of the R2 subunit of ribonucleotide reductase by intein chemistry: insertion of 3-nitrotyrosine at residue 356 as a probe of the radical initiation process. Biochemistry 2003 42 49 14541 14552 2-s2.0-0348111211 10.1021/bi0352365 (Pubitemid 37532001)
33. Irie Y., Saeki M., Kamisaki Y., Martin E., Murad F., Histone H1.2 is a substrate for denitrase, an activity that reduces nitrotyrosine immunoreactivity in proteins. Proceedings of the National Academy of Sciences of the United States of America 2003 100 10 5634 5639 2-s2.0-0037948843 10.1073/pnas. 1131756100 (Pubitemid 36576860)
34. Aulak K. S., Koeck T., Crabb J. W., Stuehr D. J., Dynamics of protein nitration in cells and mitochondria. The American Journal of Physiology 2004 286 1 H30 H38 2-s2.0-0346487262 (Pubitemid 38049459)
35. Koeck T., Fu X., Hazen S. L., Crabb J. W., Stuehr D. J., Aulak K. S., Rapid and selective oxygen-regulated protein tyrosine denitration and nitration in mitochondria. The Journal of Biological Chemistry 2004 279 26 27257 27262 2-s2.0-3042646339 10.1074/jbc.M401586200 (Pubitemid 38812564)
36. Zhan X., Desiderio D. M., Nitroproteins identified in human ex-smoker bronchoalveolar lavage fluid. Aging and Disease 2011 2 2 100 115
37. Zhan X., Du Y., Crabb J. S., Kern T. S., Crabb J. W., Identification of nitrated proteins in diabetic rat retina. Investigative Ophthalmology and Visual Science 2007 48 E-abstract 4962
38. Mallozzi C., D'Amore C., Camerini S., Macchia G., Crescenzi M., Petrucci T. C., Di Stasi A. M., Phosphorylation and nitration of tyrosine residues affect functional properties of synaptophysin and dynamin I, two proteins involved in exo-endocytosis of synaptic vesicles. Biochimica Et Biophysica Acta 2012 1833 1 110 121
39. Pawlikowski M., Winczyk K., Jaranowska M., Immunohistochemical demonstration of nitric oxide synthase (NOS) in the normal rat pituitary gland, estrogen-induced rat pituitary tumor and human pituitary adenomas. Folia Histochemica et Cytobiologica 2003 41 2 87 90 2-s2.0-0037247094 (Pubitemid 36401718)
40. Kruse A., Broholm H., Rubin I., Schmidt K., Lauritzen M., Nitric oxide synthase activity in human pituitary adenomas. Acta Neurologica Scandinavica 2002 106 6 361 366 2-s2.0-0036918501 10.1034/j.1600-0404.2002.01138.x (Pubitemid 36020744)
41. Vankelecom H., Matthys P., Denef C., Inducible nitric oxide synthase in the anterior pituitary gland: induction by interferon- γ in a subpopulation of folliculostellate cells and in an unidentifiable population of non-hormone-secreting cells. Journal of Histochemistry and Cytochemistry 1997 45 6 847 857 2-s2.0-0030922273 (Pubitemid 27248800)
42. McCann S. M., Kimura M., Karanth S., Yu W. H., Mastronardi C. A., Rettori V., The mechanism of action of cytokines to control the release of hypothalamic and pituitary hormones in infection. Annals of the New York Academy of Sciences 2000 917 4 18 2-s2.0-0033665304
43. Brunetti L., Ragazzoni E., Preziosi P., Vacca M., A possible role for nitric oxide but not for prostaglandin E2 in basal and interleukin-1- β -induced PRL release in vitro. Life Sciences 1995 56 15 L-277 L-283 2-s2.0-0028928460
44. Schwartz J., Intercellular communication in the anterior pituitary. Endocrine Reviews 2000 21 5 488 513
45. Giusti M., Fazzuoli L., Cavallero D., Valenti S., Circulating nitric oxide changes throughout the menstrual cycle in healthy women and women affected by pathological hyperprolactinemia on dopamine agonist therapy. Gynecological Endocrinology 2002 16 5 407 412 2-s2.0-0036813302 (Pubitemid 35398656)
46. Tamura T., Lee D. H., Osaka F., Fujiwara T., Shin S., Chung C. H., Tanaka K., Ichihara A., Molecular cloning and sequence analysis of cDNAs for five major subunits of human proteasomes (multi-catalytic proteinase complexes). Biochimica et Biophysica Acta 1991 1089 1 95 102 2-s2.0-0025756923 10.1016/0167-4781(91)90090-9
47. Kristensen P., Johnsen A. H., Uerkvitz W., Tanaka K., Hendil K. B., Human proteasome subunits from 2-dimensional gels identiWed by partial sequencing. Biochemical and Biophysical Research Communications 1994 205 3 1785 1789
48. Solberg R., Tasken K., Keiserud A., Jahnsen T., Molecular cloning, cDNA structure and tissue-specific expression of the human regulatory subunit RI β of cAMP-dependent protein kinases. Biochemical and Biophysical Research Communications 1991 176 1 166 172 2-s2.0-0025915104
49. Petersson A. S., Steen H., Kalume D. E., Caidahl K., Roepstorff P., Investigation of tyrosine nitration in proteins by mass spectrometry. Journal of Mass Spectrometry 2001 36 6 616 625 2-s2.0-0034942993 10.1002/jms.161 (Pubitemid 32624621)
50. Sarver A., Scheffler N. K., Shetlar M. D., Gibson B. W., Analysis of peptides and proteins containing nitrotyrosine by matrix-assisted laser desorption/ionization mass spectrometry. Journal of the American Society for Mass Spectrometry 2001 12 4 439 448 2-s2.0-0035566429 10.1016/S1044-0305(01) 00213-6 (Pubitemid 34546613)
51. Lee S. J., Lee J. R., Kim Y. H., Park Y. S., Park S. I., Park H. S., Kim K. P., Investigation of tyrosine nitration and nitrosylation of angiotensin II and bovine serum albumin with electrospray ionization mass spectrometry. Rapid Communications in Mass Spectrometry 2007 21 17 2797 2804 2-s2.0-34548180606 10.1002/rcm.3145 (Pubitemid 47310532)
52. Kim J. K., Lee J. R., Kang J. W., Lee S. J., Shin G. C., Yeo W. S., Kim K. H., Park H. S., Kim K. P., Selective enrichment and mass spectrometric identification of nitrated peptides using fluorinated carbon tags. Analytical Chemistry 2011 83 1 157 163 2-s2.0-78650791510 10.1021/ac102080d
53. Lee J. R., Lee S. J., Kim T. W., Kim J. K., Park H. S., Kim D. E., Kim K. P., Yeo W. S., Chemical approach for specific enrichment and mass analysis of nitrated peptides. Analytical Chemistry 2009 81 16 6620 6626 2-s2.0-68849131219 10.1021/ac9005099
54. Squadrito G. L., Pryor W. A., Oxidative chemistry of nitric oxide: the roles of superoxide, peroxynitrite, and carbon dioxide. Free Radical Biology and Medicine 1998 25 4-5 392 403 2-s2.0-0032171410 10.1016/S0891-5849(98)00095-1 (Pubitemid 28390297)
55. Beckman J. S., Oxidative damage and tyrosine nitration from peroxynitrite. Chemical Research in Toxicology 1996 9 5 836 844
56. Maceyka M., Payne S. G., Milstien S., Spiegel S., Sphingosine kinase, sphingosine-1-phosphate, and apoptosis. Biochimica et Biophysica Acta 2002 1585 2-3 193 201 2-s2.0-0037203305 10.1016/S1388-1981(02)00341-4 (Pubitemid 36096858)
57. Schwab S. R., Pereira J. P., Matloubian M., Xu Y., Huang Y., Cyster J. G., Immunology: lymphocyte sequestration through S1P lyase inhibition and disruption of S1P gradients. Science 2005 309 5741 1735 1739 2-s2.0-24644469502 10.1126/science.1113640 (Pubitemid 41285945)
58. Hla T., Dietary factors and immunological consequences. Science 2005 309 5741 1682 1683 10.1126/science.1118340 (Pubitemid 41285926)
59. Bedford M. T., Leder P., The FF domain: a novel motif that often accompanies WW domains. Trends in Biochemical Sciences 1999 24 7 264 265 2-s2.0-0033168375 10.1016/S0968-0004(99)01417-6 (Pubitemid 29301689)
60. Payre F., Vincent A., Finger proteins and DNA-specific recognition: distinct patterns of conserved amino acids suggest different evolutionary modes. The FEBS Letters 1988 234 2 245 250 2-s2.0-0024291196
61. Witzgall R., O'Leary E., Leaf A., Oenaldi D., Bonventre J. V., The Kruppel-associated box-A (KRAB-A) domain of zinc Wnger proteins mediates transcriptional repression. Proceedings of the National Academy of Science of the United States of America 1994 91 10 4514 4518 10.1073/pnas.91.10.4514
62. Margolin J. F., Friedman J. R., Meyer W. K. H., Vissing H., Thiesen H. J., Rauscher F. J. III, Kruppel-associated boxes are potent transcriptional repression domains. Proceedings of the National Academy of Sciences of the United States of America 1994 91 10 4509 4513 2-s2.0-0028183182
63. Hood L., Systems biology: integrating technology, biology, and computation. Mechanisms of Ageing and Development 2003 124 1 9 16 2-s2.0-0037288767 10.1016/S0047-6374(02)00164-1 (Pubitemid 36262894)
64. Aderem A., Systems biology: its practice and challenges. Cell 2005 121 4 511 513 10.1016/j.cell.2005.04.020 (Pubitemid 40720005)
65. Hood L., Tian Q., Systems approaches to biology and disease enable translational systems medicine. Genomics Proteomics Bioinformatics 2012 10 4 181 185 10.1016/j.gpb.2012.08.004
66. Zhan X., Desiderio D. M., Comparative proteomics analysis of human pituitary adenomas: current status and future perspectives. Mass Spectrometry Reviews 2005 24 6 783 813 2-s2.0-27844547685 10.1002/mas.20039 (Pubitemid 41641698)
67. Emmert-Buck M. R., Bonner R. F., Smith P. D., Chuaqui R. F., Zhuang Z., Goldstein S. R., Weiss R. A., Liotta L. A., Laser capture microdissection. Science 1996 274 5289 998 1001 2-s2.0-0030575911 10.1126/science.274.5289.998 (Pubitemid 26398425)
68. Zhou G., Li H., DeCamp D., Chen S., Shu H., Gong Y., Flaig M., Gillespie J. W., Hu N., Taylor P. R., Emmert-Buck M. R., Liotta L. A., Petricoin E. F. III, Zhao Y., 2D differential in-gel electrophoresis for the identification of esophageal scans cell cancer-specific protein markers. Molecular & Cellular Proteomics 2002 1 2 117 124 2-s2.0-0036463563
69. Liu Y., Wu J., Liu S., Zhuang D., Wang Y., Shou X., Zhu J., Immuno-laser capture microdissection of frozen prolactioma sections to prepare proteomic samples. Colloids and Surfaces B 2009 71 2 187 193 2-s2.0-67349191158 10.1016/j.colsurfb.2009.02.005
70. Liu Y., Zhuang D., Hou R., Li J., Xu G., Song T., Chen L., Yan G., Pang Q., Zhu J., Shotgun proteomic analysis of microdissected postmortem human pituitary using complementary two-dimensional liquid chromatography coupled with tandem mass spectrometer. Analytica Chimica Acta 2011 688 2 183 190 2-s2.0-79951675374 10.1016/j.aca.2010.12.032
71. Liu Y., Wu J., Yan G., Hou R., Zhuang D., Chen L., Pang Q., Zhu J., Proteomic analysis of prolactinoma cells by immuno-laser capture microdissection combined with online two-dimensional nano-scale liquid chromatography/mass spectrometry. Proteome Science 2010 8 article 2 2-s2.0-77349116857 10.1186/1477-5956-8-2
72. Ünlü M., Morgan M. E., Minden J. S., Difference gel electrophoresis: a single gel method for detecting changes in protein extracts. Electrophoresis 1997 18 11 2071 2077 2-s2.0-0343376097 (Pubitemid 27501267)
73. Lopez M. F., Berggren K., Chernokalskaya E., Lazarev A., Robinson M., Patton W. F., A comparison of silver stain and SYPRO ruby protein gel stain with respect to protein detection in two-dimensional gels and identification by peptide mass profiling. Electrophoresis 2000 21 17 3673 3683
74. Zhan X., Desiderio D. M., The use of variations in proteomes to predict, prevent, and personalize treatment for clinically nonfunctional pituitary adenomas. EPMA Journal 2010 1 3 439 459 2-s2.0-79953032955 10.1007/s13167-010- 0028-z