-
1
-
-
32944479048
-
Host-microbe interactions: Shaping the evolution of the plant immune response
-
Chisholm ST, Coaker G, Day B, Staskawicz BJ, (2006) Host-microbe interactions: Shaping the evolution of the plant immune response. Cell 124: 803-814.
-
(2006)
Cell
, vol.124
, pp. 803-814
-
-
Chisholm, S.T.1
Coaker, G.2
Day, B.3
Staskawicz, B.J.4
-
2
-
-
33751100626
-
The plant immune system
-
Jones JDG, Dangl JL, (2006) The plant immune system. Nature 444: 323-329.
-
(2006)
Nature
, vol.444
, pp. 323-329
-
-
Jones, J.D.G.1
Dangl, J.L.2
-
3
-
-
77954763024
-
Plant immunity: towards an integrated view of plant-pathogen interactions
-
Dodds PN, Rathjen JP, (2010) Plant immunity: towards an integrated view of plant-pathogen interactions. Nature Reviews Genetics 11: 539-548.
-
(2010)
Nature Reviews Genetics
, vol.11
, pp. 539-548
-
-
Dodds, P.N.1
Rathjen, J.P.2
-
4
-
-
0037324536
-
Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae
-
Tao Y, Xie ZY, Chen WQ, Glazebrook J, Chang HS, et al. (2003) Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae. Plant Cell 15: 317-330.
-
(2003)
Plant Cell
, vol.15
, pp. 317-330
-
-
Tao, Y.1
Xie, Z.Y.2
Chen, W.Q.3
Glazebrook, J.4
Chang, H.S.5
-
5
-
-
0242693135
-
On the trail of a cereal killer: Exploring the biology of Magnaporthe grisea
-
Talbot NJ, (2003) On the trail of a cereal killer: Exploring the biology of Magnaporthe grisea. Annu Rev Microbiol 57: 177-202.
-
(2003)
Annu Rev Microbiol
, vol.57
, pp. 177-202
-
-
Talbot, N.J.1
-
6
-
-
60349107504
-
Against the grain: safeguarding rice from rice blast disease
-
Skamnioti P, Gurr SJ, (2009) Against the grain: safeguarding rice from rice blast disease. Trends Biotechnol 27: 141-150.
-
(2009)
Trends Biotechnol
, vol.27
, pp. 141-150
-
-
Skamnioti, P.1
Gurr, S.J.2
-
7
-
-
35148848640
-
Magnaporthe as a model for understanding host-pathogen interactions
-
Ebbole DJ, (2007) Magnaporthe as a model for understanding host-pathogen interactions. Annu Rev Phytopathol 45: 437-456.
-
(2007)
Annu Rev Phytopathol
, vol.45
, pp. 437-456
-
-
Ebbole, D.J.1
-
8
-
-
0001119910
-
Current status of gene-for-gene concept
-
Flor HH, (1971) Current status of gene-for-gene concept. Annu Rev Phytopathol 9: 275-296.
-
(1971)
Annu Rev Phytopathol
, vol.9
, pp. 275-296
-
-
Flor, H.H.1
-
9
-
-
33746582708
-
Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor
-
Kaku H, Nishizawa Y, Ishii-Minami N, Akimoto-Tomiyama C, Dohmae N, et al. (2006) Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor. Proc Natl Acad Sci USA 103: 11086-11091.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 11086-11091
-
-
Kaku, H.1
Nishizawa, Y.2
Ishii-Minami, N.3
Akimoto-Tomiyama, C.4
Dohmae, N.5
-
10
-
-
78649609189
-
Two LysM receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in rice
-
Shimizu T, Nakano T, Takamizawa D, Desaki Y, Ishii-Minami N, et al. (2010) Two LysM receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in rice. Plant J 64: 204-214.
-
(2010)
Plant J
, vol.64
, pp. 204-214
-
-
Shimizu, T.1
Nakano, T.2
Takamizawa, D.3
Desaki, Y.4
Ishii-Minami, N.5
-
11
-
-
34250630395
-
Roles for rice membrane dynamics and plasmodesmata during biotrophic invasion by the blast fungus
-
Kankanala P, Czymmek K, Valent B, (2007) Roles for rice membrane dynamics and plasmodesmata during biotrophic invasion by the blast fungus. Plant Cell 19: 706-724.
-
(2007)
Plant Cell
, vol.19
, pp. 706-724
-
-
Kankanala, P.1
Czymmek, K.2
Valent, B.3
-
12
-
-
77953072156
-
Recent progress and understanding of the molecular mechanisms of the rice-Magnaporthe oryzae interaction
-
Liu J, Wang X, Mitchell T, Hu Y, Liu X, et al. (2010) Recent progress and understanding of the molecular mechanisms of the rice-Magnaporthe oryzae interaction. Mol Plant Pathol 11: 419-427.
-
(2010)
Mol Plant Pathol
, vol.11
, pp. 419-427
-
-
Liu, J.1
Wang, X.2
Mitchell, T.3
Hu, Y.4
Liu, X.5
-
14
-
-
33847208886
-
Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility
-
Yuan Y, Zhong S, Li Q, Zhu Z, Lou Y, et al. (2007) Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility. Plant Biotechnol J 5: 313-324.
-
(2007)
Plant Biotechnol J
, vol.5
, pp. 313-324
-
-
Yuan, Y.1
Zhong, S.2
Li, Q.3
Zhu, Z.4
Lou, Y.5
-
15
-
-
78649904088
-
Role of OsNPR1 in rice defense program as revealed by genomewide expression analysis
-
Sugano S, Jiang CJ, Miyazawa SI, Masumoto C, Yazawa K, et al. (2010) Role of OsNPR1 in rice defense program as revealed by genomewide expression analysis. Plant Mol Biol 74: 549-562.
-
(2010)
Plant Mol Biol
, vol.74
, pp. 549-562
-
-
Sugano, S.1
Jiang, C.J.2
Miyazawa, S.I.3
Masumoto, C.4
Yazawa, K.5
-
16
-
-
80052064494
-
Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae
-
Feng J-X, Cao L, Li J, Duan C-J, Luo X-M, et al. (2011) Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae. Eur J Plant Pathol 131: 221-235.
-
(2011)
Eur J Plant Pathol
, vol.131
, pp. 221-235
-
-
Feng, J.-X.1
Cao, L.2
Li, J.3
Duan, C.-J.4
Luo, X.-M.5
-
17
-
-
34447538086
-
Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice
-
Chujo T, Takai R, Akimoto-Tomiyama C, Ando S, Minami E, et al. (2007) Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice. BBA-Gene Struct Expr 1769: 497-505.
-
(2007)
BBA-Gene Struct Expr
, vol.1769
, pp. 497-505
-
-
Chujo, T.1
Takai, R.2
Akimoto-Tomiyama, C.3
Ando, S.4
Minami, E.5
-
18
-
-
34247353776
-
OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling
-
Qiu DY, Xiao J, Ding XH, Xiong M, Cai M, et al. (2007) OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling. Mol Plant-Microbe Interact 20: 492-499.
-
(2007)
Mol Plant-Microbe Interact
, vol.20
, pp. 492-499
-
-
Qiu, D.Y.1
Xiao, J.2
Ding, X.H.3
Xiong, M.4
Cai, M.5
-
19
-
-
34547699898
-
Rice WRKY45 plays a crucial role in benzothiadiazole-inducible blast resistance
-
Shimono M, Sugano S, Nakayama A, Jiang CJ, Ono K, et al. (2007) Rice WRKY45 plays a crucial role in benzothiadiazole-inducible blast resistance. Plant Cell 19: 2064-2076.
-
(2007)
Plant Cell
, vol.19
, pp. 2064-2076
-
-
Shimono, M.1
Sugano, S.2
Nakayama, A.3
Jiang, C.J.4
Ono, K.5
-
20
-
-
41849106123
-
Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants
-
Zhang J, Peng YL, Guo ZJ, (2008) Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants. Cell Res 18: 508-521.
-
(2008)
Cell Res
, vol.18
, pp. 508-521
-
-
Zhang, J.1
Peng, Y.L.2
Guo, Z.J.3
-
21
-
-
70349647024
-
A pair of allelic WRKY genes play opposite roles in rice-bacteria Interactions
-
Tao Z, Liu HB, Qiu DY, Zhou Y, Li XH, et al. (2009) A pair of allelic WRKY genes play opposite roles in rice-bacteria Interactions. Plant Physiol 151: 936-948.
-
(2009)
Plant Physiol
, vol.151
, pp. 936-948
-
-
Tao, Z.1
Liu, H.B.2
Qiu, D.Y.3
Zhou, Y.4
Li, X.H.5
-
22
-
-
27244450357
-
Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction
-
Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu GD, et al. (2005) Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Plant Physiol 138: 105-115.
-
(2005)
Plant Physiol
, vol.138
, pp. 105-115
-
-
Jantasuriyarat, C.1
Gowda, M.2
Haller, K.3
Hatfield, J.4
Lu, G.D.5
-
23
-
-
34250625175
-
Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice
-
Gowda M, Venu RC, Li H, Jantasuriyarat C, Chen S, et al. (2007) Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice. Plant Physiol 144: 524-533.
-
(2007)
Plant Physiol
, vol.144
, pp. 524-533
-
-
Gowda, M.1
Venu, R.C.2
Li, H.3
Jantasuriyarat, C.4
Chen, S.5
-
24
-
-
8744262736
-
Proteomic analysis of pathogen-responsive proteins from rice leaves induced by rice blast fungus, Magnaporthe grisea
-
Kim ST, Kim SG, Hwang DH, Kang SY, Kim HJ, et al. (2004) Proteomic analysis of pathogen-responsive proteins from rice leaves induced by rice blast fungus, Magnaporthe grisea. Proteomics 4: 3569-3578.
-
(2004)
Proteomics
, vol.4
, pp. 3569-3578
-
-
Kim, S.T.1
Kim, S.G.2
Hwang, D.H.3
Kang, S.Y.4
Kim, H.J.5
-
25
-
-
64749090995
-
Proteomic analysis of rice mutants susceptible to Magnaporthe oryzae
-
Ryu HS, Song MY, Kim CY, Han MH, Lee SK, et al. (2009) Proteomic analysis of rice mutants susceptible to Magnaporthe oryzae. Plant Biotechnol Rep 3: 167-174.
-
(2009)
Plant Biotechnol Rep
, vol.3
, pp. 167-174
-
-
Ryu, H.S.1
Song, M.Y.2
Kim, C.Y.3
Han, M.H.4
Lee, S.K.5
-
26
-
-
33847345244
-
Early and specific gene expression triggered by rice resistance gene Pi33 in response to infection by ACE1 avirulent blast fungus
-
Vergne E, Ballini E, Marques S, Mammar BS, Droc G, et al. (2007) Early and specific gene expression triggered by rice resistance gene Pi33 in response to infection by ACE1 avirulent blast fungus. New Phytol 174: 159-171.
-
(2007)
New Phytol
, vol.174
, pp. 159-171
-
-
Vergne, E.1
Ballini, E.2
Marques, S.3
Mammar, B.S.4
Droc, G.5
-
27
-
-
0347416705
-
Recognition and response in the plant immune system
-
Nimchuk Z, Eulgem T, Holt BE, Dangl JL, (2003) Recognition and response in the plant immune system. Annu Rev Genet 37: 579-609.
-
(2003)
Annu Rev Genet
, vol.37
, pp. 579-609
-
-
Nimchuk, Z.1
Eulgem, T.2
Holt, B.E.3
Dangl, J.L.4
-
28
-
-
35148882499
-
Transcript profiling in host-pathogen interactions
-
Wise RP, Moscou MJ, Bogdanove AJ, Whitham SA, (2007) Transcript profiling in host-pathogen interactions. Annu Rev Phytopathol 45: 329-369.
-
(2007)
Annu Rev Phytopathol
, vol.45
, pp. 329-369
-
-
Wise, R.P.1
Moscou, M.J.2
Bogdanove, A.J.3
Whitham, S.A.4
-
29
-
-
58149217502
-
Evaluation of twenty-two blast resistance genes in Yunnan using monogenetic rice lines
-
Li JB, Li CY, Chen Y, Lei CL, Ling ZZ, (2005) Evaluation of twenty-two blast resistance genes in Yunnan using monogenetic rice lines. Acta Phytophylacica Sinica 32: 113-119.
-
(2005)
Acta Phytophylacica Sinica
, vol.32
, pp. 113-119
-
-
Li, J.B.1
Li, C.Y.2
Chen, Y.3
Lei, C.L.4
Ling, Z.Z.5
-
30
-
-
33645316491
-
The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice
-
Qu SH, Liu GF, Zhou B, Bellizzi M, Zeng LR, et al. (2006) The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice. Genetics 172: 1901-1914.
-
(2006)
Genetics
, vol.172
, pp. 1901-1914
-
-
Qu, S.H.1
Liu, G.F.2
Zhou, B.3
Bellizzi, M.4
Zeng, L.R.5
-
31
-
-
12144291195
-
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
-
Thimm O, Blasing O, Gibon Y, Nagel A, Meyer S, et al. (2004) MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J 37: 914-939.
-
(2004)
Plant J
, vol.37
, pp. 914-939
-
-
Thimm, O.1
Blasing, O.2
Gibon, Y.3
Nagel, A.4
Meyer, S.5
-
32
-
-
0037342492
-
Disease resistance and abiotic stress tolerance in rice are inversely modulated by an abscisic acid-inducible mitogen-activated protein kinase
-
Xiong LZ, Yang YN, (2003) Disease resistance and abiotic stress tolerance in rice are inversely modulated by an abscisic acid-inducible mitogen-activated protein kinase. Plant Cell 15: 745-759.
-
(2003)
Plant Cell
, vol.15
, pp. 745-759
-
-
Xiong, L.Z.1
Yang, Y.N.2
-
33
-
-
57149094101
-
Gene Set Enrichment Analysis
-
In: Hahne F, Huber W, Gentleman R, Falcon S, editors, New York: Springer
-
Gentleman R M M, Huber W (2008) Gene Set Enrichment Analysis. In: Hahne F, Huber W, Gentleman R, Falcon S, editors. Bioconductor Case Studies. New York: Springer. 193-195.
-
(2008)
Bioconductor Case Studies
, pp. 193-195
-
-
Gentleman, R.M.M.1
Huber, W.2
-
34
-
-
4544351273
-
Interaction-dependent gene expression in Mla-specified response to barley powdery mildew
-
Caldo RA, Nettleton D, Wise RP, (2004) Interaction-dependent gene expression in Mla-specified response to barley powdery mildew. Plant Cell 16: 2514-2528.
-
(2004)
Plant Cell
, vol.16
, pp. 2514-2528
-
-
Caldo, R.A.1
Nettleton, D.2
Wise, R.P.3
-
35
-
-
2442591728
-
Comparative analysis of the receptor-like kinase family in Arabidopsis and rice
-
Shiu SH, Karlowski WM, Pan RS, Tzeng YH, Mayer KFX, et al. (2004) Comparative analysis of the receptor-like kinase family in Arabidopsis and rice. Plant Cell 16: 1220-1234.
-
(2004)
Plant Cell
, vol.16
, pp. 1220-1234
-
-
Shiu, S.H.1
Karlowski, W.M.2
Pan, R.S.3
Tzeng, Y.H.4
Mayer, K.F.X.5
-
36
-
-
33747872039
-
Functional analysis of receptor-like kinases in monocots and dicots
-
Morillo SA, Tax FE, (2006) Functional analysis of receptor-like kinases in monocots and dicots. Curr Opin Plant Biol 9: 460-469.
-
(2006)
Curr Opin Plant Biol
, vol.9
, pp. 460-469
-
-
Morillo, S.A.1
Tax, F.E.2
-
37
-
-
34247234601
-
The rice kinase database. A phylogenomic database for the rice kinome
-
Dardick C, Chen J, Richter T, Ouyang S, Ronald P, (2007) The rice kinase database. A phylogenomic database for the rice kinome. Plant Physiol 143: 579-586.
-
(2007)
Plant Physiol
, vol.143
, pp. 579-586
-
-
Dardick, C.1
Chen, J.2
Richter, T.3
Ouyang, S.4
Ronald, P.5
-
38
-
-
0033634664
-
FLS2: An LRR receptor-like kinase involved in the perception of the bacterial elicitor flagellin in Arabidopsis
-
Gomez-Gomez L, Boller T, (2000) FLS2: An LRR receptor-like kinase involved in the perception of the bacterial elicitor flagellin in Arabidopsis. Mol Cell 5: 1003-1011.
-
(2000)
Mol Cell
, vol.5
, pp. 1003-1011
-
-
Gomez-Gomez, L.1
Boller, T.2
-
39
-
-
33644749576
-
The Arabidopsis receptor kinase FLS2 binds flg22 and determines the specificity of flagellin perception
-
Chinchilla D, Bauer Z, Regenass M, Boller T, Felix G, (2006) The Arabidopsis receptor kinase FLS2 binds flg22 and determines the specificity of flagellin perception. Plant Cell 18: 465-476.
-
(2006)
Plant Cell
, vol.18
, pp. 465-476
-
-
Chinchilla, D.1
Bauer, Z.2
Regenass, M.3
Boller, T.4
Felix, G.5
-
40
-
-
34547151023
-
A flagellin-induced complex of the receptor FLS2 and BAK1 initiates plant defence
-
Chinchilla D, Zipfel C, Robatzek S, Kemmerling B, Nurnberger T, et al. (2007) A flagellin-induced complex of the receptor FLS2 and BAK1 initiates plant defence. Nature 448: 497-U412.
-
(2007)
Nature
, vol.448
, pp. 412-497
-
-
Chinchilla, D.1
Zipfel, C.2
Robatzek, S.3
Kemmerling, B.4
Nurnberger, T.5
-
41
-
-
57149101893
-
Analysis of flagellin perception mediated by flg22 receptor OsFLS2 in rice
-
Takai R, Isogai A, Takayama S, Che FS, (2008) Analysis of flagellin perception mediated by flg22 receptor OsFLS2 in rice. Mol Plant-Microbe Interact 21: 1635-1642.
-
(2008)
Mol Plant-Microbe Interact
, vol.21
, pp. 1635-1642
-
-
Takai, R.1
Isogai, A.2
Takayama, S.3
Che, F.S.4
-
42
-
-
79955605835
-
Towards establishment of a rice stress response interactome
-
Seo YS, Chern M, Bartley LE, Han MH, Jung KH, et al. (2011) Towards establishment of a rice stress response interactome. PLoS Genet 7: e1002020.
-
(2011)
PLoS Genet
, vol.7
-
-
Seo, Y.S.1
Chern, M.2
Bartley, L.E.3
Han, M.H.4
Jung, K.H.5
-
43
-
-
83055194683
-
Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence
-
Delteil A, Blein M, Faivre-Rampant O, Guellim A, Estevan J, et al. (2012) Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence. Mol Plant Pathol 13: 72-82.
-
(2012)
Mol Plant Pathol
, vol.13
, pp. 72-82
-
-
Delteil, A.1
Blein, M.2
Faivre-Rampant, O.3
Guellim, A.4
Estevan, J.5
-
44
-
-
18744374630
-
Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells
-
Xie Z, Zhang ZL, Zou XL, Huang J, Ruas P, et al. (2005) Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells. Plant Physiol 137: 176-189.
-
(2005)
Plant Physiol
, vol.137
, pp. 176-189
-
-
Xie, Z.1
Zhang, Z.L.2
Zou, X.L.3
Huang, J.4
Ruas, P.5
-
45
-
-
34547219390
-
Networks of WRKY transcription factors in defense signaling
-
Eulgem T, Somssich IE, (2007) Networks of WRKY transcription factors in defense signaling. Curr Opin Plant Biol 10: 366-371.
-
(2007)
Curr Opin Plant Biol
, vol.10
, pp. 366-371
-
-
Eulgem, T.1
Somssich, I.E.2
-
46
-
-
77957322383
-
Genome-wide analysis of phenylpropanoid defence pathways
-
Naoumkina MA, Zhao QA, Gallego-Giraldo L, Dai XB, Zhao PX, et al. (2010) Genome-wide analysis of phenylpropanoid defence pathways. Mol Plant Pathol 11: 829-846.
-
(2010)
Mol Plant Pathol
, vol.11
, pp. 829-846
-
-
Naoumkina, M.A.1
Zhao, Q.A.2
Gallego-Giraldo, L.3
Dai, X.B.4
Zhao, P.X.5
-
47
-
-
0036733289
-
The phenylpropanoid pathway and plant defence - a genomics perspective
-
Dixon RA, Achnine L, Kota P, Liu CJ, Reddy MSS, et al. (2002) The phenylpropanoid pathway and plant defence- a genomics perspective. Mol Plant Pathol 3: 371-390.
-
(2002)
Mol Plant Pathol
, vol.3
, pp. 371-390
-
-
Dixon, R.A.1
Achnine, L.2
Kota, P.3
Liu, C.J.4
Reddy, M.S.S.5
-
48
-
-
0027994499
-
Increased disease susceptibility of transgenic tobacco plants with suppressed levels of preformed phenylpropanoid products
-
Maher EA, Bate NJ, Ni WT, Elkind Y, Dixon RA, et al. (1994) Increased disease susceptibility of transgenic tobacco plants with suppressed levels of preformed phenylpropanoid products. Proc Natl Acad Sci USA 91: 7802-7806.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 7802-7806
-
-
Maher, E.A.1
Bate, N.J.2
Ni, W.T.3
Elkind, Y.4
Dixon, R.A.5
-
49
-
-
0036417236
-
Effects of inhibiting phenolic biosynthesis on penetration resistance of barley isolines containing seven powdery mildew resistance genes or alleles
-
Kruger WM, Carver TLW, Zeyen RJ, (2002) Effects of inhibiting phenolic biosynthesis on penetration resistance of barley isolines containing seven powdery mildew resistance genes or alleles. Physiol Mol Plant Pathol 61: 41-51.
-
(2002)
Physiol Mol Plant Pathol
, vol.61
, pp. 41-51
-
-
Kruger, W.M.1
Carver, T.L.W.2
Zeyen, R.J.3
-
50
-
-
67650787446
-
Gene expression profiling and silencing reveal that monolignol biosynthesis plays a critical role in penetration defence in wheat against powdery mildew invasion
-
Bhuiyan NH, Selvaraj G, Wei YD, King J, (2009) Gene expression profiling and silencing reveal that monolignol biosynthesis plays a critical role in penetration defence in wheat against powdery mildew invasion. J Exp Bot 60: 509-521.
-
(2009)
J Exp Bot
, vol.60
, pp. 509-521
-
-
Bhuiyan, N.H.1
Selvaraj, G.2
Wei, Y.D.3
King, J.4
-
51
-
-
33748134793
-
Overexpression of the wounding-responsive gene AtMYB15 activates the shikimate pathway in Arabidopsis
-
Chen YH, Zhang XB, Wu W, Chen ZL, Gu HY, et al. (2006) Overexpression of the wounding-responsive gene AtMYB15 activates the shikimate pathway in Arabidopsis. Journal of Integrative Plant Biology 48: 1084-1095.
-
(2006)
Journal of Integrative Plant Biology
, vol.48
, pp. 1084-1095
-
-
Chen, Y.H.1
Zhang, X.B.2
Wu, W.3
Chen, Z.L.4
Gu, H.Y.5
-
52
-
-
62549142281
-
MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis
-
Zhou JL, Lee CH, Zhong RQ, Ye ZH, (2009) MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis. Plant Cell 21: 248-266.
-
(2009)
Plant Cell
, vol.21
, pp. 248-266
-
-
Zhou, J.L.1
Lee, C.H.2
Zhong, R.Q.3
Ye, Z.H.4
-
53
-
-
79954418957
-
Transcriptional networks for lignin biosynthesis: more complex than we thought?
-
Zhao Q, Dixon RA, (2010) Transcriptional networks for lignin biosynthesis: more complex than we thought? Trends Plant Sci 16: 227-233.
-
(2010)
Trends Plant Sci
, vol.16
, pp. 227-233
-
-
Zhao, Q.1
Dixon, R.A.2
-
54
-
-
69249147365
-
Metabolomic analysis reveals a common pattern of metabolic re-programming during invasion of three host plant species by Magnaporthe grisea
-
Parker D, Beckmann M, Zubair H, Enot DP, Caracuel-Rios Z, et al. (2009) Metabolomic analysis reveals a common pattern of metabolic re-programming during invasion of three host plant species by Magnaporthe grisea. Plant J 59: 723-737.
-
(2009)
Plant J
, vol.59
, pp. 723-737
-
-
Parker, D.1
Beckmann, M.2
Zubair, H.3
Enot, D.P.4
Caracuel-Rios, Z.5
-
55
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biology 5: R80.
-
(2004)
Genome Biology
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
-
56
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, et al. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
-
57
-
-
1342288026
-
affy - analysis of Affymetrix GeneChip data at the probe level
-
Gautier L, Cope L, Bolstad BM, Irizarry RA, (2004) affy- analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20: 307-315.
-
(2004)
Bioinformatics
, vol.20
, pp. 307-315
-
-
Gautier, L.1
Cope, L.2
Bolstad, B.M.3
Irizarry, R.A.4
-
58
-
-
33846101405
-
The TIGR Rice Genome Annotation Resource: Improvements and new features
-
Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, et al. (2007) The TIGR Rice Genome Annotation Resource: Improvements and new features. Nucleic Acids Res 35: D883-D887.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Ouyang, S.1
Zhu, W.2
Hamilton, J.3
Lin, H.4
Campbell, M.5
-
59
-
-
33644872577
-
Limma: linear models for microarray data
-
In: Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W, editors, New York: Springer
-
Smyth GK (2005) Limma: linear models for microarray data. In: Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W, editors. Bioinformatics and Computational Biology Solutions using R and Bioconductor. New York: Springer. 397-420.
-
(2005)
Bioinformatics and Computational Biology Solutions using R and Bioconductor
, pp. 397-420
-
-
Smyth, G.K.1
-
60
-
-
0001677717
-
Controlling the false discovery rate - a practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y, (1995) Controlling the false discovery rate- a practical and powerful approach to multiple testing. J R Stat Soc Ser B-Methodol 57: 289-300.
-
(1995)
J R Stat Soc Ser B-Methodol
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
61
-
-
9444225935
-
Java Treeview-extensible visualization of microarray data
-
Saldanha AJ, (2004) Java Treeview-extensible visualization of microarray data. Bioinformatics 20: 3246-3248.
-
(2004)
Bioinformatics
, vol.20
, pp. 3246-3248
-
-
Saldanha, A.J.1
-
62
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang JH, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.H.4
Zhang, Z.5
-
63
-
-
53749099905
-
Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy
-
Jung KH, Dardick C, Bartley LE, Cao PJ, Phetsom J, et al. (2008) Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy. PLoS One 3: e3337.
-
(2008)
PLoS One
, vol.3
-
-
Jung, K.H.1
Dardick, C.2
Bartley, L.E.3
Cao, P.J.4
Phetsom, J.5
-
64
-
-
78651337578
-
PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database
-
Zhang H, Jin JP, Tang LA, Zhao Y, Gu XC, et al. (2011) PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database. Nucleic Acids Res 39: D1114-D1117.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Zhang, H.1
Jin, J.P.2
Tang, L.A.3
Zhao, Y.4
Gu, X.C.5
-
65
-
-
75549087883
-
PInTFDB: updated content and new features of the plant transcription factor database
-
Perez-Rodriguez P, Riano-Pachon DM, Correa LGG, Rensing SA, Kersten B, et al. (2010) PInTFDB: updated content and new features of the plant transcription factor database. Nucleic Acids Res 38: D822-D827.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Perez-Rodriguez, P.1
Riano-Pachon, D.M.2
Correa, L.G.G.3
Rensing, S.A.4
Kersten, B.5
-
66
-
-
57749101302
-
Targeted degradation of the cyclin-dependent kinase inhibitor ICK4/KRP6 by RING-type E3 ligases is essential for mitotic cell cycle progression during Arabidopsis gametogenesis
-
Liu J, Zhang Y, Qin G, Tsuge T, Sakaguchi N, et al. (2008) Targeted degradation of the cyclin-dependent kinase inhibitor ICK4/KRP6 by RING-type E3 ligases is essential for mitotic cell cycle progression during Arabidopsis gametogenesis. Plant Cell 20: 1538-1554.
-
(2008)
Plant Cell
, vol.20
, pp. 1538-1554
-
-
Liu, J.1
Zhang, Y.2
Qin, G.3
Tsuge, T.4
Sakaguchi, N.5
-
67
-
-
84862561518
-
Arabidopsis RAP2.2 plays an important role in plant resistance to Botrytis cinerea and ethylene responses
-
Zhao Y, Wei T, Yin KQ, Chen ZL, Gu HY, et al. (2012) Arabidopsis RAP2.2 plays an important role in plant resistance to Botrytis cinerea and ethylene responses. New Phytol 195: 450-460.
-
(2012)
New Phytol
, vol.195
, pp. 450-460
-
-
Zhao, Y.1
Wei, T.2
Yin, K.Q.3
Chen, Z.L.4
Gu, H.Y.5
-
68
-
-
0037435395
-
Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data
-
Ramakers C, Ruijter JM, Deprez RHL, Moorman AFM, (2003) Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci Lett 339: 62-66.
-
(2003)
Neurosci Lett
, vol.339
, pp. 62-66
-
-
Ramakers, C.1
Ruijter, J.M.2
Deprez, R.H.L.3
Moorman, A.F.M.4
-
69
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method
-
Livak KJ, Schmittgen TD, (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method. Methods 25: 402-408.
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
70
-
-
0030138945
-
Ubiquitin promoter-based vectors for high-level expression of selectable and/or screenable marker genes in monocotyledonous plants
-
Christensen AH, Quail PH, (1996) Ubiquitin promoter-based vectors for high-level expression of selectable and/or screenable marker genes in monocotyledonous plants. Transgenic Res 5: 213-218.
-
(1996)
Transgenic Res
, vol.5
, pp. 213-218
-
-
Christensen, A.H.1
Quail, P.H.2
-
71
-
-
33748319354
-
Early infection of scutellum tissue with Agrobacterium allows high-speed transformation of rice
-
Toki S, Hara N, Ono K, Onodera H, Tagiri A, et al. (2006) Early infection of scutellum tissue with Agrobacterium allows high-speed transformation of rice. Plant J 47: 969-976.
-
(2006)
Plant J
, vol.47
, pp. 969-976
-
-
Toki, S.1
Hara, N.2
Ono, K.3
Onodera, H.4
Tagiri, A.5
-
72
-
-
33846636392
-
Over-expression of a flower-specific transcription factor gene AtMYB24 causes aberrant anther development
-
Yang XY, Li JG, Pei M, Gu H, Chen ZL, et al. (2007) Over-expression of a flower-specific transcription factor gene AtMYB24 causes aberrant anther development. Plant Cell Rep 26: 219-228.
-
(2007)
Plant Cell Rep
, vol.26
, pp. 219-228
-
-
Yang, X.Y.1
Li, J.G.2
Pei, M.3
Gu, H.4
Chen, Z.L.5
|