-
1
-
-
1542513548
-
Force-Clamp Spectroscopy Monitors the Folding Trajectory of a Single Protein
-
DOI 10.1126/science.1092497
-
J. Fernandez and H. Li, Science 303, 1674 (2004). SCIEAS 0036-8075 10.1126/science.1092497 (Pubitemid 38338326)
-
(2004)
Science
, vol.303
, Issue.5664
, pp. 1674-1678
-
-
Fernandez, J.M.1
Li, H.2
-
2
-
-
0028071373
-
-
SCIEAS 0036-8075 10.1126/science.8079175
-
C. Bustamante, J. Marko, E. Siggia, and S. Smith, Science 265, 1599 (1994). SCIEAS 0036-8075 10.1126/science.8079175
-
(1994)
Science
, vol.265
, pp. 1599
-
-
Bustamante, C.1
Marko, J.2
Siggia, E.3
Smith, S.4
-
3
-
-
33750970551
-
Direct measurement of the full, sequence-dependent folding landscape of a nucleic acid
-
DOI 10.1126/science.1133601
-
M. Woodside, P. Anthony, W. Behnke-Parks, K. Larizadeh, D. Herschlag, and S. Block, Science 314, 1001 (2006). SCIEAS 0036-8075 10.1126/science.1133601 (Pubitemid 44749947)
-
(2006)
Science
, vol.314
, Issue.5801
, pp. 1001-1004
-
-
Woodside, M.T.1
Anthony, P.C.2
Behnke-Parks, W.M.3
Larizadeh, K.4
Herschlag, D.5
Block, S.M.6
-
4
-
-
34848909232
-
Force-clamp spectroscopy of single-protein monomers reveals the individual unfolding and folding pathways of i27 and ubiquitin
-
DOI 10.1529/biophysj.107.104422
-
S. Garcia-Manyes, J. Brujić, C. Badilla, and J. Fernandez, Biophys. J. 93, 2436 (2007). BIOJAU 0006-3495 10.1529/biophysj.107.104422 (Pubitemid 47511144)
-
(2007)
Biophysical Journal
, vol.93
, Issue.7
, pp. 2436-2446
-
-
Garcia-Manyes, S.1
Brujic, J.2
Badilla, C.L.3
Fernandez, J.M.4
-
5
-
-
77953013756
-
-
BIOJAU 0006-3495 10.1016/j.bpj.2010.02.053
-
R. Berkovich, S. Garcia-Manyes, M. Urbakh, J. Klafter, and J. Fernandez, Biophys. J. 98, 2692 (2010). BIOJAU 0006-3495 10.1016/j.bpj.2010.02.053
-
(2010)
Biophys. J.
, vol.98
, pp. 2692
-
-
Berkovich, R.1
Garcia-Manyes, S.2
Urbakh, M.3
Klafter, J.4
Fernandez, J.5
-
6
-
-
73949127174
-
-
PNASA6 0027-8424 10.1073/pnas.0905764106 288
-
C. Hyeon, G. Morrison, D. Pincus, and D. Thirumalai, Proc. Natl. Acad. Sci. U. S. A. 106, 20 288 (2009). PNASA6 0027-8424 10.1073/pnas.0905764106
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 20
-
-
Hyeon, C.1
Morrison, G.2
Pincus, D.3
Thirumalai, D.4
-
7
-
-
34249940831
-
Signatures of hydrophobic collapse in extended proteins captured with force spectroscopy
-
DOI 10.1073/pnas.0702179104
-
K. Walther, F. Gräiter, L. Dougan, C. Badilla, B. Berne, and J. Fernandez, Proc. Natl. Acad. Sci. U. S. A. 104, 7916 (2007). PNASA6 0027-8424 10.1073/pnas.0702179104 (Pubitemid 47185851)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.19
, pp. 7916-7921
-
-
Walther, K.A.1
Grater, F.2
Dougan, L.3
Badilla, C.L.4
Berne, B.J.5
Fernandez, J.M.6
-
8
-
-
4243754128
-
-
PRLTAO 0031-9007 10.1103/PhysRevLett.78.2690
-
C. Jarzynski, Phys. Rev. Lett. 78, 2690 (1997). PRLTAO 0031-9007 10.1103/PhysRevLett.78.2690
-
(1997)
Phys. Rev. Lett.
, vol.78
, pp. 2690
-
-
Jarzynski, C.1
-
9
-
-
0032023968
-
-
JSTPBS 0022-4715 10.1023/A:1023208217925
-
G. Crooks, J. Stat. Phys. 90, 1481 (1998). JSTPBS 0022-4715 10.1023/A:1023208217925
-
(1998)
J. Stat. Phys.
, vol.90
, pp. 1481
-
-
Crooks, G.1
-
10
-
-
0035333627
-
Fast-growth thermodynamic integration: Error and efficiency analysis
-
DOI 10.1063/1.1363668
-
G. Hummer, J. Chem. Phys. 114, 7330 (2001). JCPSA6 0021-9606 10.1063/1.1363668 (Pubitemid 32508743)
-
(2001)
Journal of Chemical Physics
, vol.114
, Issue.17
, pp. 7330-7337
-
-
Hummer, G.1
-
11
-
-
17444372741
-
Biased sampling of nonequilibrium trajectories: Can fast switching simulations outperform conventional free energy calculation methods?
-
DOI 10.1021/jp044556a
-
H. Oberhofer, C. Dellago, and P. Geissler, J. Phys. Chem. B 109, 6902 (2005). JPCBFK 1520-6106 10.1021/jp044556a (Pubitemid 40538460)
-
(2005)
Journal of Physical Chemistry B
, vol.109
, Issue.14
, pp. 6902-6915
-
-
Oberhofer, H.1
Dellago, C.2
Geissler, P.L.3
-
12
-
-
67650482788
-
-
JCCHDD 0192-8651 10.1002/jcc.21290
-
H. Oberhofer and C. Dellago, J. Comput. Chem. 30, 1726 (2009). JCCHDD 0192-8651 10.1002/jcc.21290
-
(2009)
J. Comput. Chem.
, vol.30
, pp. 1726
-
-
Oberhofer, H.1
Dellago, C.2
-
13
-
-
70350482335
-
-
JCPSA6 0021-9606 10.1063/1.3242285
-
D. Minh and J. Chodera, J. Chem. Phys. 131, 134110 (2009). JCPSA6 0021-9606 10.1063/1.3242285
-
(2009)
J. Chem. Phys.
, vol.131
, pp. 134110
-
-
Minh, D.1
Chodera, J.2
-
15
-
-
33750305197
-
Diffusion of a single semiflexible charged polymer
-
DOI 10.1209/epl/i2006-10254-x
-
X. Schlagberger, J. Bayer, J. Rädler, and R. Netz, Europhys. Lett. 76, 346 (2006). EULEEJ 0295-5075 10.1209/epl/i2006-10254-x (Pubitemid 44620866)
-
(2006)
Europhysics Letters
, vol.76
, Issue.2
, pp. 346-352
-
-
Schlagberger, X.1
Bayer, J.2
Radler, J.O.3
Netz, R.R.4
-
17
-
-
22444431830
-
-
SCIEAS 0036-8075 10.1126/science.1102236
-
J. M. Fernandez, H. Li, and J. Brujić, Science 306, 411 (2004). SCIEAS 0036-8075 10.1126/science.1102236
-
(2004)
Science
, vol.306
, pp. 411
-
-
Fernandez, J.M.1
Li, H.2
Brujić, J.3
-
18
-
-
67649774600
-
-
PNASA6 0027-8424 10.1073/pnas.0901213106 534
-
S. Garcia-Maynes, L. Dougan, C. Badilla, J. Brujić, and J. Fernandez, Proc. Natl. Acad. Sci. U. S. A. 106, 10 534 (2009). PNASA6 0027-8424 10.1073/pnas.0901213106
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 10
-
-
Garcia-Maynes, S.1
Dougan, L.2
Badilla, C.3
Brujić, J.4
Fernandez, J.5
-
19
-
-
84875419881
-
-
See Supplemental Material at http://link.aps.org/supplemental/10.1103/ PhysRevLett.110.128301 for experimental protocol, ubiquitin polypeptide preparation, derivation of Eq., estimating the influence of fluctuations in the applied force, and a diagram of de Gennes' "expanding sausage" model.
-
-
-
-
20
-
-
17844377025
-
-
SCIEAS 0036-8075 10.1126/science.1106969
-
R. B. Best and G. Hummer, Science 308, 498 (2005). SCIEAS 0036-8075 10.1126/science.1106969
-
(2005)
Science
, vol.308
, pp. 498
-
-
Best, R.B.1
Hummer, G.2
-
21
-
-
28644437048
-
The importance of sequence diversity in the aggregation and evolution of proteins
-
DOI 10.1038/nature04195
-
C. Wright, S. Teichmann, J. Clarke, and C. Dobson, Nature (London) 438, 878 (2005). NATUAS 0028-0836 10.1038/nature04195 (Pubitemid 41753072)
-
(2005)
Nature
, vol.438
, Issue.7069
, pp. 878-881
-
-
Wright, C.F.1
Teichmann, S.A.2
Clarke, J.3
Dobson, C.M.4
-
22
-
-
0018101150
-
-
SCIEAS 0036-8075 10.1126/science.347575
-
G. Bell, Science 200, 618 (1978). SCIEAS 0036-8075 10.1126/science.347575
-
(1978)
Science
, vol.200
, pp. 618
-
-
Bell, G.1
-
23
-
-
15544363835
-
-
MAMOBX 0024-9297 10.1021/ma00130a008
-
J. Marko and E. Siggia, Macromolecules 28, 8759 (1995). MAMOBX 0024-9297 10.1021/ma00130a008
-
(1995)
Macromolecules
, vol.28
, pp. 8759
-
-
Marko, J.1
Siggia, E.2
-
24
-
-
0022098302
-
-
JPSLBO 0302-072X 10.1051/jphyslet:019850046014063900
-
P. de Gennes, J. Phys. Lett. 46, 639 (1985). JPSLBO 0302-072X 10.1051/jphyslet:019850046014063900
-
(1985)
J. Phys. Lett.
, vol.46
, pp. 639
-
-
De Gennes, P.1
-
25
-
-
0031285905
-
Kinetic partitioning mechanism as a unifying theme in the folding of biomolecules
-
DOI 10.1007/s002140050198, Theory, Computation, and Modeling
-
D. Thirumalai, D. Klimov, and S. Woodson, Theor. Chem. Acc. 96, 14 (1997). TCACFW 1432-881X 10.1007/s002140050198 (Pubitemid 127092553)
-
(1997)
Theoretical Chemistry Accounts
, vol.96
, Issue.1
, pp. 14-22
-
-
Thirumalai, D.1
Klimov, D.K.2
Woodson, S.A.3
-
26
-
-
84865975569
-
-
PNASA6 0027-8424 10.1073/pnas.1212167109 416
-
R. Berkovich, R. I. Hermans, I. Popa, G. Stirnemann, S. Garcia-Manyes, B. Berne, and J. Fernandez, Proc. Natl. Acad. Sci. U. S. A. 109, 14 416 (2012). PNASA6 0027-8424 10.1073/pnas.1212167109
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 14
-
-
Berkovich, R.1
Hermans, R.I.2
Popa, I.3
Stirnemann, G.4
Garcia-Manyes, S.5
Berne, B.6
Fernandez, J.7
-
27
-
-
84862076708
-
-
PNASA6 0027-8424 10.1073/pnas.1117368109 800
-
A. Soranno, B. Buchli, D. Nettels, R. Cheng, S. Müller-Späth, S. Pfeil, A. Hoffman, E. Lipman, D. Makarov, and B. Schuler, Proc. Natl. Acad. Sci. U. S. A. 109, 17 800 (2012). PNASA6 0027-8424 10.1073/pnas.1117368109
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 17
-
-
Soranno, A.1
Buchli, B.2
Nettels, D.3
Cheng, R.4
Müller-Späth, S.5
Pfeil, S.6
Hoffman, A.7
Lipman, E.8
Makarov, D.9
Schuler, B.10
-
28
-
-
57449090161
-
-
PNASA6 0027-8424 10.1073/pnas.0806154105 320
-
T. Cellmer, E. Henry, J. Hofrichter, and W. Eaton, Proc. Natl. Acad. Sci. U. S. A. 105, 18 320 (2008). PNASA6 0027-8424 10.1073/pnas.0806154105
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 18
-
-
Cellmer, T.1
Henry, E.2
Hofrichter, J.3
Eaton, W.4
|