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Volumn 110, Issue 12, 2013, Pages

Force-clamp experiments reveal the free-energy profile and diffusion coefficient of the collapse of protein molecules

Author keywords

[No Author keywords available]

Indexed keywords

ALL-AT-ONCE; INTERNAL DEGREES OF FREEDOM; NON EQUILIBRIUM TRAJECTORIES; PHYSICAL MODEL; POLYPROTEINS; PROTEIN DOMAINS; PROTEIN MOLECULES; VISCOUS EFFECT;

EID: 84875438723     PISSN: 00319007     EISSN: 10797114     Source Type: Journal    
DOI: 10.1103/PhysRevLett.110.128301     Document Type: Article
Times cited : (35)

References (28)
  • 1
    • 1542513548 scopus 로고    scopus 로고
    • Force-Clamp Spectroscopy Monitors the Folding Trajectory of a Single Protein
    • DOI 10.1126/science.1092497
    • J. Fernandez and H. Li, Science 303, 1674 (2004). SCIEAS 0036-8075 10.1126/science.1092497 (Pubitemid 38338326)
    • (2004) Science , vol.303 , Issue.5664 , pp. 1674-1678
    • Fernandez, J.M.1    Li, H.2
  • 2
    • 0028071373 scopus 로고
    • SCIEAS 0036-8075 10.1126/science.8079175
    • C. Bustamante, J. Marko, E. Siggia, and S. Smith, Science 265, 1599 (1994). SCIEAS 0036-8075 10.1126/science.8079175
    • (1994) Science , vol.265 , pp. 1599
    • Bustamante, C.1    Marko, J.2    Siggia, E.3    Smith, S.4
  • 4
    • 34848909232 scopus 로고    scopus 로고
    • Force-clamp spectroscopy of single-protein monomers reveals the individual unfolding and folding pathways of i27 and ubiquitin
    • DOI 10.1529/biophysj.107.104422
    • S. Garcia-Manyes, J. Brujić, C. Badilla, and J. Fernandez, Biophys. J. 93, 2436 (2007). BIOJAU 0006-3495 10.1529/biophysj.107.104422 (Pubitemid 47511144)
    • (2007) Biophysical Journal , vol.93 , Issue.7 , pp. 2436-2446
    • Garcia-Manyes, S.1    Brujic, J.2    Badilla, C.L.3    Fernandez, J.M.4
  • 8
    • 4243754128 scopus 로고    scopus 로고
    • PRLTAO 0031-9007 10.1103/PhysRevLett.78.2690
    • C. Jarzynski, Phys. Rev. Lett. 78, 2690 (1997). PRLTAO 0031-9007 10.1103/PhysRevLett.78.2690
    • (1997) Phys. Rev. Lett. , vol.78 , pp. 2690
    • Jarzynski, C.1
  • 9
    • 0032023968 scopus 로고    scopus 로고
    • JSTPBS 0022-4715 10.1023/A:1023208217925
    • G. Crooks, J. Stat. Phys. 90, 1481 (1998). JSTPBS 0022-4715 10.1023/A:1023208217925
    • (1998) J. Stat. Phys. , vol.90 , pp. 1481
    • Crooks, G.1
  • 10
    • 0035333627 scopus 로고    scopus 로고
    • Fast-growth thermodynamic integration: Error and efficiency analysis
    • DOI 10.1063/1.1363668
    • G. Hummer, J. Chem. Phys. 114, 7330 (2001). JCPSA6 0021-9606 10.1063/1.1363668 (Pubitemid 32508743)
    • (2001) Journal of Chemical Physics , vol.114 , Issue.17 , pp. 7330-7337
    • Hummer, G.1
  • 11
    • 17444372741 scopus 로고    scopus 로고
    • Biased sampling of nonequilibrium trajectories: Can fast switching simulations outperform conventional free energy calculation methods?
    • DOI 10.1021/jp044556a
    • H. Oberhofer, C. Dellago, and P. Geissler, J. Phys. Chem. B 109, 6902 (2005). JPCBFK 1520-6106 10.1021/jp044556a (Pubitemid 40538460)
    • (2005) Journal of Physical Chemistry B , vol.109 , Issue.14 , pp. 6902-6915
    • Oberhofer, H.1    Dellago, C.2    Geissler, P.L.3
  • 12
    • 67650482788 scopus 로고    scopus 로고
    • JCCHDD 0192-8651 10.1002/jcc.21290
    • H. Oberhofer and C. Dellago, J. Comput. Chem. 30, 1726 (2009). JCCHDD 0192-8651 10.1002/jcc.21290
    • (2009) J. Comput. Chem. , vol.30 , pp. 1726
    • Oberhofer, H.1    Dellago, C.2
  • 13
    • 70350482335 scopus 로고    scopus 로고
    • JCPSA6 0021-9606 10.1063/1.3242285
    • D. Minh and J. Chodera, J. Chem. Phys. 131, 134110 (2009). JCPSA6 0021-9606 10.1063/1.3242285
    • (2009) J. Chem. Phys. , vol.131 , pp. 134110
    • Minh, D.1    Chodera, J.2
  • 15
    • 33750305197 scopus 로고    scopus 로고
    • Diffusion of a single semiflexible charged polymer
    • DOI 10.1209/epl/i2006-10254-x
    • X. Schlagberger, J. Bayer, J. Rädler, and R. Netz, Europhys. Lett. 76, 346 (2006). EULEEJ 0295-5075 10.1209/epl/i2006-10254-x (Pubitemid 44620866)
    • (2006) Europhysics Letters , vol.76 , Issue.2 , pp. 346-352
    • Schlagberger, X.1    Bayer, J.2    Radler, J.O.3    Netz, R.R.4
  • 17
    • 22444431830 scopus 로고    scopus 로고
    • SCIEAS 0036-8075 10.1126/science.1102236
    • J. M. Fernandez, H. Li, and J. Brujić, Science 306, 411 (2004). SCIEAS 0036-8075 10.1126/science.1102236
    • (2004) Science , vol.306 , pp. 411
    • Fernandez, J.M.1    Li, H.2    Brujić, J.3
  • 19
    • 84875419881 scopus 로고    scopus 로고
    • See Supplemental Material at http://link.aps.org/supplemental/10.1103/ PhysRevLett.110.128301 for experimental protocol, ubiquitin polypeptide preparation, derivation of Eq., estimating the influence of fluctuations in the applied force, and a diagram of de Gennes' "expanding sausage" model.
  • 20
    • 17844377025 scopus 로고    scopus 로고
    • SCIEAS 0036-8075 10.1126/science.1106969
    • R. B. Best and G. Hummer, Science 308, 498 (2005). SCIEAS 0036-8075 10.1126/science.1106969
    • (2005) Science , vol.308 , pp. 498
    • Best, R.B.1    Hummer, G.2
  • 21
    • 28644437048 scopus 로고    scopus 로고
    • The importance of sequence diversity in the aggregation and evolution of proteins
    • DOI 10.1038/nature04195
    • C. Wright, S. Teichmann, J. Clarke, and C. Dobson, Nature (London) 438, 878 (2005). NATUAS 0028-0836 10.1038/nature04195 (Pubitemid 41753072)
    • (2005) Nature , vol.438 , Issue.7069 , pp. 878-881
    • Wright, C.F.1    Teichmann, S.A.2    Clarke, J.3    Dobson, C.M.4
  • 22
    • 0018101150 scopus 로고
    • SCIEAS 0036-8075 10.1126/science.347575
    • G. Bell, Science 200, 618 (1978). SCIEAS 0036-8075 10.1126/science.347575
    • (1978) Science , vol.200 , pp. 618
    • Bell, G.1
  • 23
    • 15544363835 scopus 로고
    • MAMOBX 0024-9297 10.1021/ma00130a008
    • J. Marko and E. Siggia, Macromolecules 28, 8759 (1995). MAMOBX 0024-9297 10.1021/ma00130a008
    • (1995) Macromolecules , vol.28 , pp. 8759
    • Marko, J.1    Siggia, E.2
  • 24
    • 0022098302 scopus 로고
    • JPSLBO 0302-072X 10.1051/jphyslet:019850046014063900
    • P. de Gennes, J. Phys. Lett. 46, 639 (1985). JPSLBO 0302-072X 10.1051/jphyslet:019850046014063900
    • (1985) J. Phys. Lett. , vol.46 , pp. 639
    • De Gennes, P.1
  • 25
    • 0031285905 scopus 로고    scopus 로고
    • Kinetic partitioning mechanism as a unifying theme in the folding of biomolecules
    • DOI 10.1007/s002140050198, Theory, Computation, and Modeling
    • D. Thirumalai, D. Klimov, and S. Woodson, Theor. Chem. Acc. 96, 14 (1997). TCACFW 1432-881X 10.1007/s002140050198 (Pubitemid 127092553)
    • (1997) Theoretical Chemistry Accounts , vol.96 , Issue.1 , pp. 14-22
    • Thirumalai, D.1    Klimov, D.K.2    Woodson, S.A.3


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