-
1
-
-
13144265766
-
Multidimensional separation of peptides for effective proteomic analysis
-
Issaq, H.J.; Chan, K.C.; Janini, G.M.; Conrads, T.P.; Veenstra, T.D. Multidimensional separation of peptides for effective proteomic analysis. J. Chromatogr. B. Analyt. Technol. Biomed. Life. Sci., 2005, 817(1),35-47.
-
(2005)
J. Chromatogr. B. Analyt. Technol. Biomed. Life. Sci
, vol.817
, Issue.1
, pp. 35-47
-
-
Issaq, H.J.1
Chan, K.C.2
Janini, G.M.3
Conrads, T.P.4
Veenstra, T.D.5
-
2
-
-
11244297888
-
MudPIT: A powerful proteomics tool for discovery
-
Schirmer, E.C.; Yates, J.R.; Gerace, L. MudPIT: A powerful proteomics tool for discovery. Discov. Med. 2003,3(18),38-39.
-
(2003)
Discov. Med
, vol.3
, Issue.18
, pp. 38-39
-
-
Schirmer, E.C.1
Yates, J.R.2
Gerace, L.3
-
3
-
-
0032079807
-
Comprehensive two-dimensional high-performance liquid chroma-tography for the isolation of overexpressed proteins and proteome mapping
-
Opiteck, G.J.; Ramirez, S.M.; Jorgenson, J.W.; Moseley, M.A. Comprehensive two-dimensional high-performance liquid chroma-tography for the isolation of overexpressed proteins and proteome mapping. Anal. Biochem. 1998,258(2),349-361.
-
(1998)
Anal. Biochem
, vol.258
, Issue.2
, pp. 349-361
-
-
Opiteck, G.J.1
Ramirez, S.M.2
Jorgenson, J.W.3
Moseley, M.A.4
-
4
-
-
0000928811
-
Two-dimensional capillary liquid chromatography based on mic-rofractionation
-
Vissers, J.P.C.; van Soest, R.E.J.; Chervet, J.P.; Cramers, C.A. Two-dimensional capillary liquid chromatography based on mic-rofractionation, J. Micro. Sep. 1999,11(4),277-286
-
(1999)
J. Micro. Sep
, vol.11
, Issue.4
, pp. 277-286
-
-
Vissers, J.P.C.1
van Soest, R.E.J.2
Chervet, J.P.3
Cramers, C.A.4
-
5
-
-
30344451098
-
Two-dimensional separation of peptides using RP-RP-HPLC system with different pH in first and second separation dimensions
-
Gilar, M.; Olivova, P.; Daly, A.E.; Gebler, J.C. Two-dimensional separation of peptides using RP-RP-HPLC system with different pH in first and second separation dimensions. J. Sep. Sci. 2005,28(14),1694-1703.
-
(2005)
J. Sep. Sci
, vol.28
, Issue.14
, pp. 1694-1703
-
-
Gilar, M.1
Olivova, P.2
Daly, A.E.3
Gebler, J.C.4
-
6
-
-
60549116161
-
Equation for peak capacity estimation in two-dimensional liquid chromatography
-
Li, X.; Stoll, D.R.; Carr, P.W. Equation for peak capacity estimation in two-dimensional liquid chromatography. Anal. Chem. 2009,81(2),845-850.
-
(2009)
Anal. Chem
, vol.81
, Issue.2
, pp. 845-850
-
-
Li, X.1
Stoll, D.R.2
Carr, P.W.3
-
7
-
-
41149121749
-
Comparison of the practical resolving power of one- and two-dimensional high-performance liquid chromatography analysis of metabolomic samples
-
Stoll, D.R.; Wang, X.; Carr, P.W. Comparison of the practical resolving power of one- and two-dimensional high-performance liquid chromatography analysis of metabolomic samples. Anal. Chem. 2008,80(1),268-278.
-
(2008)
Anal. Chem
, vol.80
, Issue.1
, pp. 268-278
-
-
Stoll, D.R.1
Wang, X.2
Carr, P.W.3
-
8
-
-
70349777613
-
Optimizing the peak capacity per unit time in one-dimensional and off-line two-dimensional liquid chromatography for the separation of complex peptide samples
-
Eeltink, S.; Dolman, S.; Swart, R.; Ursem, M.; Schoenmakers, P.J. Optimizing the peak capacity per unit time in one-dimensional and off-line two-dimensional liquid chromatography for the separation of complex peptide samples. J. Chromatogr. A. 2009,1216(44),7368-7374.
-
(2009)
J. Chromatogr. A
, vol.1216
, Issue.44
, pp. 7368-7374
-
-
Eeltink, S.1
Dolman, S.2
Swart, R.3
Ursem, M.4
Schoenmakers, P.J.5
-
9
-
-
33644867852
-
Multistep mass tagging coupled with 2D LC-MS--an approach to increasing the number of identified proteins
-
Shi, Y.; Hill, J.; Xiang, R.; Horváth, C.; Wilkins, J.A. Multistep mass tagging coupled with 2D LC-MS--an approach to increasing the number of identified proteins. J. Biomol. Tech. 2005,16(3),190-196.
-
(2005)
J. Biomol. Tech
, vol.16
, Issue.3
, pp. 190-196
-
-
Shi, Y.1
Hill, J.2
Xiang, R.3
Horváth, C.4
Wilkins, J.A.5
-
10
-
-
0029644596
-
Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database
-
Yates, J.R.; Eng, J.K.; McCormack, A.L.; Schieltz, D. Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database. Anal. Chem. 1995,67(8),1426-1436.
-
(1995)
Anal. Chem
, vol.67
, Issue.8
, pp. 1426-1436
-
-
Yates, J.R.1
Eng, J.K.2
McCormack, A.L.3
Schieltz, D.4
-
11
-
-
0029669683
-
Data-controlled automation of liquid chromatography/tandem mass spectrometry analysis of peptide mixtures
-
Stahl, D.; Swiderek, K.; Davis, M.; Lee, T. Data-controlled automation of liquid chromatography/tandem mass spectrometry analysis of peptide mixtures. J. Am. Soc. Mass Spectrom. 1996,7(6),532-549.
-
(1996)
J. Am. Soc. Mass Spectrom
, vol.7
, Issue.6
, pp. 532-549
-
-
Stahl, D.1
Swiderek, K.2
Davis, M.3
Lee, T.4
-
12
-
-
77955049296
-
Characterization of an Ion Mobility-Multiplexed Collision Induced Dissociation-Tandem Time-of-Flight Mass Spectrometry Approach
-
Ibrahim, Y.M.; Prior, D.C.; Baker, E.S.; Smith, R.D.; Belov, M.E. Characterization of an Ion Mobility-Multiplexed Collision Induced Dissociation-Tandem Time-of-Flight Mass Spectrometry Approach. Int. J. Mass Spectrom. 2010,293(1-3),34-44.
-
(2010)
Int. J. Mass Spectrom
, vol.293
, Issue.1-3
, pp. 34-44
-
-
Ibrahim, Y.M.1
Prior, D.C.2
Baker, E.S.3
Smith, R.D.4
Belov, M.E.5
-
13
-
-
0035237935
-
Towards defining the urinary proteome using liquid chromatography-tandem mass spectrometry. I. Profiling an unfractionated tryptic digest
-
Spahr, C.S.; Davis, M.T.; McGinley, M.D.; Robinson, J.H.; Bures, E.J.; Beierle, J.; Mort, J.; Courchesne, P.L.; Chen, K.; Wahl, R.C.; Yu, W.; Luethy, R.; Patterson, S.D. Towards defining the urinary proteome using liquid chromatography-tandem mass spectrometry. I. Profiling an unfractionated tryptic digest. Proteomics. 2001,1(1),93-107.
-
(2001)
Proteomics
, vol.1
, Issue.1
, pp. 93-107
-
-
Spahr, C.S.1
Davis, M.T.2
McGinley, M.D.3
Robinson, J.H.4
Bures, E.J.5
Beierle, J.6
Mort, J.7
Courchesne, P.L.8
Chen, K.9
Wahl, R.C.10
Yu, W.11
Luethy, R.12
Patterson, S.D.13
-
14
-
-
0036747350
-
Approaching complete peroxisome characterization by gas-phase fractionation
-
Yi, E.C.; Marelli, M.; Lee, H.; Purvine, S.O.; Aebersold, R.; Ait-chison, J.D.; Goodlett, D.R. Approaching complete peroxisome characterization by gas-phase fractionation. Electrophoresis. 2002,23(18),3205-3216.
-
(2002)
Electrophoresis
, vol.23
, Issue.18
, pp. 3205-3216
-
-
Yi, E.C.1
Marelli, M.2
Lee, H.3
Purvine, S.O.4
Aebersold, R.5
Ait-Chison, J.D.6
Goodlett, D.R.7
-
15
-
-
20144388265
-
Quantitative proteomic analysis by accurate mass retention time pairs
-
Silva, J.C.; Denny, R.; Dorschel, C.A.; Gorenstein, M.; Kass, I.J.; Li, G.Z.; McKenna, T.; Nold, M.J.; Richardson, K.; Young, P.; Ge-romanos, S. Quantitative proteomic analysis by accurate mass retention time pairs. Anal. Chem. 2005,77(7),2187-2200.
-
(2005)
Anal. Chem
, vol.77
, Issue.7
, pp. 2187-2200
-
-
Silva, J.C.1
Denny, R.2
Dorschel, C.A.3
Gorenstein, M.4
Kass, I.J.5
Li, G.Z.6
McKenna, T.7
Nold, M.J.8
Richardson, K.9
Young, P.10
Ge-Romanos, S.11
-
16
-
-
0034655385
-
Accurate Mass Multiplexed Tandem Mass Spectrometry for High-Throughput Polypeptide Identification from Mixtures
-
Masselon, C.; Anderson, G.A.; Harkewicz, R.; Bruce, J.E.; Pasa-Tolic, L.; Smith, R.D.; Accurate Mass Multiplexed Tandem Mass Spectrometry for High-Throughput Polypeptide Identification from Mixtures. Anal. Chem. 2000,72,1918-1924.
-
(2000)
Anal. Chem
, vol.72
, pp. 1918-1924
-
-
Masselon, C.1
Anderson, G.A.2
Harkewicz, R.3
Bruce, J.E.4
Pasa-Tolic, L.5
Smith, R.D.6
-
17
-
-
31344449923
-
A general precursor ion-like scanning mode on quadrupole-TOF instruments compatible with chromatographic separation
-
Niggeweg, R.; Köcher, T.; Gentzel, M.; Buscaino, A.; Taipale, M.; Akhtar, A.; Wilm, M. A general precursor ion-like scanning mode on quadrupole-TOF instruments compatible with chromatographic separation. Proteomics. 2006,6(1),41-53.
-
(2006)
Proteomics
, vol.6
, Issue.1
, pp. 41-53
-
-
Niggeweg, R.1
Köcher, T.2
Gentzel, M.3
Buscaino, A.4
Taipale, M.5
Akhtar, A.6
Wilm, M.7
-
18
-
-
63049084861
-
The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS
-
Geromanos, S.J.; Vissers, J.P.; Silva, J.C.; Dorschel, C.A.; Li, G.Z.; Gorenstein, M.V.; Bateman, R.H.; Langridge, J.I. The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS. Proteomics. 2009,9(6),1683-1695.
-
(2009)
Proteomics
, vol.9
, Issue.6
, pp. 1683-1695
-
-
Geromanos, S.J.1
Vissers, J.P.2
Silva, J.C.3
Dorschel, C.A.4
Li, G.Z.5
Gorenstein, M.V.6
Bateman, R.H.7
Langridge, J.I.8
-
19
-
-
77954365852
-
Improving protein and proteome coverage through data-independent multiplexed peptide fragmentation
-
Blackburn, K.; Mbeunkui, F.; Mitra, S.K.; Mentzel, T.; Goshe, M.B. Improving protein and proteome coverage through data-independent multiplexed peptide fragmentation. J. Proteome Res. 2010,9(7),3621-3637.
-
(2010)
J. Proteome Res
, vol.9
, Issue.7
, pp. 3621-3637
-
-
Blackburn, K.1
Mbeunkui, F.2
Mitra, S.K.3
Mentzel, T.4
Goshe, M.B.5
-
20
-
-
0348142994
-
Nanoflow LC/ion mobility/CID/TOF for proteomics, a- nalysis of a human urinary proteome
-
Moon, M.H.; Myung, S.; Plasencia, M.; Hilderbrand, A.E.; Clem-mer, D.E. Nanoflow LC/ion mobility/CID/TOF for proteomics, a- nalysis of a human urinary proteome. J. Proteome Res. 2003,2(6),589-597.
-
(2003)
J. Proteome Res
, vol.2
, Issue.6
, pp. 589-597
-
-
Moon, M.H.1
Myung, S.2
Plasencia, M.3
Hilderbrand, A.E.4
Clem-Mer, D.E.5
-
21
-
-
76149102921
-
An LC-IMS-MS platform providing increased dynamic range for high-throughput proteomic studies
-
Baker, E.S.; Livesay, E.A.; Orton, D.J.; Moore, R.J.; Danielson, W.F.; Prior, D.C.; Ibrahim, Y.M.; LaMarche, B.L.; Mayampu-rath, A.M.; Schepmoes, A.A.; Hopkins, D.F.; Tang, K.; Smith, R.D.; Belov, M.E. An LC-IMS-MS platform providing increased dynamic range for high-throughput proteomic studies. J. Proteome Res. 2010,9(2),997-1006.
-
(2010)
J. Proteome Res
, vol.9
, Issue.2
, pp. 997-1006
-
-
Baker, E.S.1
Livesay, E.A.2
Orton, D.J.3
Moore, R.J.4
Danielson, W.F.5
Prior, D.C.6
Ibrahim, Y.M.7
Lamarche, B.L.8
Mayampu-Rath, A.M.9
Schepmoes, A.A.10
Hopkins, D.F.11
Tang, K.12
Smith, R.D.13
Belov, M.E.14
-
22
-
-
0035891934
-
Multidimensional separations of complex peptide mixtures, a combined high-performance liquid chromatography/ion mobili-ty/time-of-flight mass spectrometry approach
-
Valentine, S.J.; Kulchania, M.; Srebalus Barnes, C.A.; Clemmer, D.E. Multidimensional separations of complex peptide mixtures, a combined high-performance liquid chromatography/ion mobili-ty/time-of-flight mass spectrometry approach, Int. J. Mass Spectrom., 2001,212(1-3),97-109.
-
(2001)
Int. J. Mass Spectrom
, vol.212
, Issue.1-3
, pp. 97-109
-
-
Valentine, S.J.1
Kulchania, M.2
Srebalus Barnes, C.A.3
Clemmer, D.E.4
-
23
-
-
34250713877
-
Ion mobility spectrometry-mass spectrometry performance using electrodynamic ion funnels and elevated drift gas pressures
-
Baker, E.S.; Clowers, B.H.; Li, F.; Tang, K.; Tolmachev, A.V.; Prior, D.C.; Belov, M.E.; Smith, R.D. Ion mobility spectrometry-mass spectrometry performance using electrodynamic ion funnels and elevated drift gas pressures. J. Am. Soc. Mass Spectrom. 2007,18(7),1176-1187.
-
(2007)
J. Am. Soc. Mass Spectrom
, vol.18
, Issue.7
, pp. 1176-1187
-
-
Baker, E.S.1
Clowers, B.H.2
Li, F.3
Tang, K.4
Tolmachev, A.V.5
Prior, D.C.6
Belov, M.E.7
Smith, R.D.8
-
24
-
-
33846811132
-
An investigation of the mobility separation of some peptide and protein ions using a new hybrid quadrupole/travelling wave IMS/oa-ToF instrument
-
Pringle, S.D.; Giles, K.; Wildgoose, J.L.; Williams, J.P.; Slade, S.E.; Thalassinos, K.; Bateman, R.H.; Bowers, M.T.; Scrivens, J.H. An investigation of the mobility separation of some peptide and protein ions using a new hybrid quadrupole/travelling wave IMS/oa-ToF instrument. Int. J. Mass Spectrom. 2007,261(1),1-12
-
(2007)
Int. J. Mass Spectrom
, vol.261
, Issue.1
, pp. 1-12
-
-
Pringle, S.D.1
Giles, K.2
Wildgoose, J.L.3
Williams, J.P.4
Slade, S.E.5
Thalassinos, K.6
Bateman, R.H.7
Bowers, M.T.8
Scrivens, J.H.9
-
25
-
-
79955870883
-
Using ion mobility data to improve peptide identification: Intrinsic amino acid size parameters
-
Valentine, S.J.; Ewing, M.A.; Dilger, J.M.; Glover, M.S.; Geroma-nos, S.; Hughes, C.; Clemmer, D.E. Using ion mobility data to improve peptide identification: intrinsic amino acid size parameters. J. Proteome Res. 2011,10(5),2318-2329.
-
(2011)
J. Proteome Res
, vol.10
, Issue.5
, pp. 2318-2329
-
-
Valentine, S.J.1
Ewing, M.A.2
Dilger, J.M.3
Glover, M.S.4
Geroma-Nos, S.5
Hughes, C.6
Clemmer, D.E.7
-
26
-
-
77955455399
-
Quantifying the impact of chimera MS/MS spectra on peptide identification in large scale proteomics studies
-
Houel, S.; Abernathy, R.; Renganathan, K.; Meyer-Arendt, K.; Ahn, N.; Old, W.M. Quantifying the impact of chimera MS/MS spectra on peptide identification in large scale proteomics studies. J. Proteome Res. 2010,9(8),4152-4160.
-
(2010)
J. Proteome Res
, vol.9
, Issue.8
, pp. 4152-4160
-
-
Houel, S.1
Abernathy, R.2
Renganathan, K.3
Meyer-Arendt, K.4
Ahn, N.5
Old, W.M.6
-
27
-
-
76149113930
-
Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry
-
Bern, M.; Finney, G.; Hoopmann, M.R.; Merrihew, G.; Toth, M.J.; MacCoss, M.J. Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry. Anal. Chem. 2010,82(3),833-841.
-
(2010)
Anal. Chem
, vol.82
, Issue.3
, pp. 833-841
-
-
Bern, M.1
Finney, G.2
Hoopmann, M.R.3
Merrihew, G.4
Toth, M.J.5
Maccoss, M.J.6
-
28
-
-
0035689313
-
A theoretical study of the optimization of gradients at elevated temperature
-
Neue, U.D.; Mazzeo, J.R. A theoretical study of the optimization of gradients at elevated temperature, J. Sep. Sci. 2001,24(12),921-929
-
(2001)
J. Sep. Sci
, vol.24
, Issue.12
, pp. 921-929
-
-
Neue, U.D.1
Mazzeo, J.R.2
-
29
-
-
0021508912
-
Two-dimensional separations: Concept and promise
-
Giddings, J.C. Two-dimensional separations: concept and promise. Anal. Chem. 1984,56(12),1258A-1260A, 1262A, 1264A
-
(1984)
Anal. Chem
, vol.56
, Issue.12
-
-
Giddings, J.C.1
-
31
-
-
33645526350
-
Accessible proteomics space and its implications for peak capacity for zero-, one- and two-dimensional separations coupled with FT-ICR and TOF mass spectrometry
-
Frahm, J.L.; Howard, B.E.; Heber, S.; Muddiman, D.C. Accessible proteomics space and its implications for peak capacity for zero-, one- and two-dimensional separations coupled with FT-ICR and TOF mass spectrometry. J. Mass Spectrom. 2006,41(3),281-288.
-
(2006)
J. Mass Spectrom
, vol.41
, Issue.3
, pp. 281-288
-
-
Frahm, J.L.1
Howard, B.E.2
Heber, S.3
Muddiman, D.C.4
-
32
-
-
5744223586
-
An improved model for prediction of retention times of tryptic peptides in ion pair reversed-phase HPLC: Its application to protein peptide mapping by off-line HPLC-MALDI MS
-
Krokhin, O.V.; Craig, R.; Spicer, V.; Ens, W.; Standing, K.G.; Beavis, R.C.; Wilkins, J.A. An improved model for prediction of retention times of tryptic peptides in ion pair reversed-phase HPLC: its application to protein peptide mapping by off-line HPLC-MALDI MS. Mol. Cell. Proteomics. 2004,3(9),908-919.
-
(2004)
Mol. Cell. Proteomics
, vol.3
, Issue.9
, pp. 908-919
-
-
Krokhin, O.V.1
Craig, R.2
Spicer, V.3
Ens, W.4
Standing, K.G.5
Beavis, R.C.6
Wilkins, J.A.7
-
33
-
-
4744364642
-
Physi-cochemical properties determining the detection probability of tryptic peptides in Fourier transform mass spectrometry. A correlation study
-
Nielsen, M.L.; Savitski, M.M.; Kjeldsen, F.; Zubarev, R.A. Physi-cochemical properties determining the detection probability of tryptic peptides in Fourier transform mass spectrometry. A correlation study. Anal. Chem. 2004,76(19),5872-5877.
-
(2004)
Anal. Chem
, vol.76
, Issue.19
, pp. 5872-5877
-
-
Nielsen, M.L.1
Savitski, M.M.2
Kjeldsen, F.3
Zubarev, R.A.4
-
34
-
-
79952285447
-
Simulating and validating proteomics data and search results
-
Geromanos, S.J.; Hughes, C.; Golick, D.; Ciavarini, S.; Gorenstein, M.V.; Richardson, K.; Hoyes, J.B.; Vissers, J.P.; Langridge, J.I. Simulating and validating proteomics data and search results. Pro-teomics. 2011,11(6),1189-1211.
-
(2011)
Pro-teomics
, vol.11
, Issue.6
, pp. 1189-1211
-
-
Geromanos, S.J.1
Hughes, C.2
Golick, D.3
Ciavarini, S.4
Gorenstein, M.V.5
Richardson, K.6
Hoyes, J.B.7
Vissers, J.P.8
Langridge, J.I.9
-
35
-
-
53549100731
-
Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations
-
Merrihew, G.E.; Davis, C.; Ewing, B.; Williams, G.; Käll, L.; Frewen, B.E.; Noble W.S.; Green P.; Thomas J.H.; MacCoss M.J. Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations. Genome Res. 2008,18(10),1660-1669.
-
(2008)
Genome Res
, vol.18
, Issue.10
, pp. 1660-1669
-
-
Merrihew, G.E.1
Davis, C.2
Ewing, B.3
Williams, G.4
Käll, L.5
Frewen, B.E.6
Noble, W.S.7
Green, P.8
Thomas, J.H.9
Maccoss, M.J.10
-
36
-
-
31144445302
-
Pregnancy-associated exosomes and their modulation of T cell signaling
-
Taylor, D.D.; Akyol, S.; Gercel-Taylor, C. Pregnancy-associated exosomes and their modulation of T cell signaling. J. Immunol. 2006,176(3),1534-1542.
-
(2006)
J. Immunol
, vol.176
, Issue.3
, pp. 1534-1542
-
-
Taylor, D.D.1
Akyol, S.2
Gercel-Taylor, C.3
-
37
-
-
0036636552
-
A novel precursor ion discovery method on a hybrid quadrupole orthogonal acceleration time-of-flight (Q-TOF) mass spectrometer for studying protein phosphorylation
-
Bateman, R.H.; Carruthers, R.; Hoyes, J.B.; Jones, C.; Langridge, J.I.; Millar, A.; Vissers J.P. A novel precursor ion discovery method on a hybrid quadrupole orthogonal acceleration time-of-flight (Q-TOF) mass spectrometer for studying protein phosphorylation. J. Am. Soc. Mass Spectrom. 2002,13(7),792-803.
-
(2002)
J. Am. Soc. Mass Spectrom
, vol.13
, Issue.7
, pp. 792-803
-
-
Bateman, R.H.1
Carruthers, R.2
Hoyes, J.B.3
Jones, C.4
Langridge, J.I.5
Millar, A.6
Vissers, J.P.7
-
38
-
-
5444250387
-
Applications of a travelling wave-based radio-frequency-only stacked ring ion guide
-
Giles, K.; Pringle, S.D.; Worthington, K.R.; Little, D.; Wildgoose, J.L.; Bateman, R.H. Applications of a travelling wave-based radio-frequency-only stacked ring ion guide. Rapid Commun. Mass Spectrom. 2004,18(20),2401-2414.
-
(2004)
Rapid Commun. Mass Spectrom
, vol.18
, Issue.20
, pp. 2401-2414
-
-
Giles, K.1
Pringle, S.D.2
Worthington, K.R.3
Little, D.4
Wildgoose, J.L.5
Bateman, R.H.6
-
39
-
-
79956299821
-
Enhancements in travelling wave ion mobility resolution
-
Jun, 15
-
Giles, K.; Williams, J.P.; Campuzano, I. Enhancements in travelling wave ion mobility resolution. Rapid Commun. Mass Spectrom. 2011 Jun 15;25(11),1559-1566.
-
(2011)
Rapid Commun. Mass Spectrom
, vol.25
, Issue.11
, pp. 1559-1566
-
-
Giles, K.1
Williams, J.P.2
Campuzano, I.3
-
40
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectro-metry
-
Elias, J.E.; Gygi, S.P. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectro-metry. Nat. Methods. 2007,4(3),207-214.
-
(2007)
Nat. Methods
, vol.4
, Issue.3
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
41
-
-
72149093828
-
Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry
-
Reiter, L.; Claassen, M.; Schrimpf, S.P.; Jovanovic, M.; Schmidt, A.; Buhmann, J.M.; Hengartner, M.O.; Aebersold, R. Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry. Mol. Cell. Proteomics. 2009,8(11),2405-2417.
-
(2009)
Mol. Cell. Proteomics
, vol.8
, Issue.11
, pp. 2405-2417
-
-
Reiter, L.1
Claassen, M.2
Schrimpf, S.P.3
Jovanovic, M.4
Schmidt, A.5
Buhmann, J.M.6
Hengartner, M.O.7
Aebersold, R.8
-
42
-
-
63049138916
-
Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures
-
Li, G.Z.; Vissers, J.P.; Silva, J.C.; Golick, D.; Gorenstein, M.V.; Geromanos, S.J. Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures. Proteomics. 2009,9(6),1696-1719.
-
(2009)
Proteomics
, vol.9
, Issue.6
, pp. 1696-1719
-
-
Li, G.Z.1
Vissers, J.P.2
Silva, J.C.3
Golick, D.4
Gorenstein, M.V.5
Geromanos, S.J.6
-
43
-
-
65949098656
-
Comparison of 1-D and 2-D LC MS/MS methods for proteomic analysis of human serum
-
Gilar, M.; Olivova, P.; Chakraborty, A.B.; Jaworski, A.; Geroma-nos, S.J.; Gebler, J.C. Comparison of 1-D and 2-D LC MS/MS methods for proteomic analysis of human serum. Electrophoresis. 2009,30(7),1157-1167.
-
(2009)
Electrophoresis
, vol.30
, Issue.7
, pp. 1157-1167
-
-
Gilar, M.1
Olivova, P.2
Chakraborty, A.B.3
Jaworski, A.4
Geroma-Nos, S.J.5
Gebler, J.C.6
-
44
-
-
77955918485
-
Assessment of resolution parameters for CID-based shotgun proteomic experiments on the LTQ-Orbitrap mass spectrometer
-
Kim, M.S.; Kandasamy, K.; Chaerkady, R.; Pandey, A. Assessment of resolution parameters for CID-based shotgun proteomic experiments on the LTQ-Orbitrap mass spectrometer. J. Am. Soc. Mass Spectrom. 2010,21(9),1606-1611.
-
(2010)
J. Am. Soc. Mass Spectrom
, vol.21
, Issue.9
, pp. 1606-1611
-
-
Kim, M.S.1
Kandasamy, K.2
Chaerkady, R.3
Pandey, A.4
-
45
-
-
0033473749
-
A database of 660 peptide ion cross sections: Use of intrinsic size parameters for bona fide predictions of cross sections
-
Valentine, S.J.; Counterman, A.E.; Clemmer, D.E. A database of 660 peptide ion cross sections: use of intrinsic size parameters for bona fide predictions of cross sections. J. Am. Soc. Mass Spectrom. 1999,10(11),1188-1211.
-
(1999)
J. Am. Soc. Mass Spectrom
, vol.10
, Issue.11
, pp. 1188-1211
-
-
Valentine, S.J.1
Counterman, A.E.2
Clemmer, D.E.3
-
46
-
-
0037176207
-
Peak capacity of ion mobility mass spectrometry: Separation of peptides in helium buffer gas
-
Ruotolo, B.T.; Gillig, K.J.; Stone, E.G.; Russell, D.H. Peak capacity of ion mobility mass spectrometry: separation of peptides in helium buffer gas. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2002,782(1-2),385-392.
-
(2002)
J. Chromatogr. B Analyt. Technol. Biomed. Life Sci
, vol.782
, Issue.1-2
, pp. 385-392
-
-
Ruotolo, B.T.1
Gillig, K.J.2
Stone, E.G.3
Russell, D.H.4
-
47
-
-
1942420732
-
Peak capacity of ion mobility mass spectrometry: The utility of varying drift gas polarizability for the separation of tryptic peptides
-
Ruotolo, B.T.; McLean, J.A.; Gillig, K.J.; Russell, D.H. Peak capacity of ion mobility mass spectrometry: the utility of varying drift gas polarizability for the separation of tryptic peptides. J. Mass Spectrom. 2004,39(4),361-367.
-
(2004)
J. Mass Spectrom
, vol.39
, Issue.4
, pp. 361-367
-
-
Ruotolo, B.T.1
McLean, J.A.2
Gillig, K.J.3
Russell, D.H.4
-
48
-
-
79960763879
-
Quantification of proteins using data independent analysis (MS(E)) in simple and complex samples: A systematic evaluation
-
Levin, Y.; Hradetzky, E.; Bahn, S. Quantification of proteins using data independent analysis (MS(E)) in simple and complex samples: a systematic evaluation. Proteomics. 2011,11(16),3273-3287.
-
(2011)
Proteomics
, vol.11
, Issue.16
, pp. 3273-3287
-
-
Levin, Y.1
Hradetzky, E.2
Bahn, S.3
-
49
-
-
84868261208
-
Design and Application of a Data-Independent Precursor and Product Ion Repository
-
Thalassinos K, Vissers JP, Tenzer S, Levin Y, Thompson JW, Daniel D, Mann D, Delong MR, Moseley MA, America AH, Ot-tens AK, Cavey GS, Efstathiou G, Scrivens JH, Langridge JI, Geromanos SJ. Design and Application of a Data-Independent Precursor and Product Ion Repository. J Am Soc Mass Spectrom. 2012; 23(10): 1808-1820.
-
(2012)
J Am Soc Mass Spectrom
, vol.23
, Issue.10
, pp. 1808-1820
-
-
Thalassinos, K.1
Vissers, J.P.2
Tenzer, S.3
Levin, Y.4
Thompson, J.W.5
Daniel, D.6
Mann, D.7
Delong, M.R.8
Moseley, M.A.9
America, A.H.10
Ot-Tens, A.K.11
Cavey, G.S.12
Efstathiou, G.13
Scrivens, J.H.14
Langridge, J.I.15
Geromanos, S.J.16
-
50
-
-
31644446949
-
Absolute quantification of proteins by LCMSE: A virtue of parallel MS acquisition
-
Silva JC, Gorenstein MV, Li GZ, Vissers JP, Geromanos SJ. Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition. Mol Cell Proteomics. 2006, 5(1), 144-156.
-
(2006)
Mol Cell Proteomics
, vol.5
, Issue.1
, pp. 144-156
-
-
Silva, J.C.1
Gorenstein, M.V.2
Li, G.Z.3
Vissers, J.P.4
Geromanos, S.J.5
-
51
-
-
51049110528
-
Efficacy of glyco-protein enrichment by microscale lectin affinity chromatography
-
Madera M, Mann B, Mechref Y, Novotny MV. Efficacy of glyco-protein enrichment by microscale lectin affinity chromatography. J Sep Sci. 2008, 31(14), 2722-2732.
-
(2008)
J Sep Sci
, vol.31
, Issue.14
, pp. 2722-2732
-
-
Madera, M.1
Mann, B.2
Mechref, Y.3
Novotny, M.V.4
-
52
-
-
79959270103
-
A proteomics platform combining depletion, multi-lectin affinity chromatography (M-LAC), and isoe-lectric focusing to study the beast cancer proteome
-
Zeng Z, Hincapie M, Pitteri SJ, Hanash S, Schalkwijk J, Hogan JM, Wang H, Hancock WS. A proteomics platform combining depletion, multi-lectin affinity chromatography (M-LAC), and isoe-lectric focusing to study the beast cancer proteome. Anal Chem. 2011, 83(12), 4845-4854.
-
(2011)
Anal Chem
, vol.83
, Issue.12
, pp. 4845-4854
-
-
Zeng, Z.1
Hincapie, M.2
Pitteri, S.J.3
Hanash, S.4
Schalkwijk, J.5
Hogan, J.M.6
Wang, H.7
Hancock, W.S.8
-
53
-
-
79960733735
-
Fractionation of the human plasma proteome for monoclonal antibody proteomics-based bio-marker discovery
-
Kovács A, Sperling E, Lázár J, Balogh A, Kádas J, Szekrényes A, Takács L, Kurucz I, Guttman A. Fractionation of the human plasma proteome for monoclonal antibody proteomics-based bio-marker discovery. Electrophoresis. 2011, 32(15), 1916-1925.
-
(2011)
Electrophoresis
, vol.32
, Issue.15
, pp. 1916-1925
-
-
Kovács, A.1
Sperling, E.2
Lázár, J.3
Balogh, A.4
Kádas, J.5
Szekrényes, A.6
Takács, L.7
Kurucz, I.8
Guttman, A.9
-
54
-
-
76149146038
-
Comparison of extensive protein fractionation and repetitive LC-MS/MS analyses on depth of analysis for complex proteomes
-
Wang H, Chang-Wong T, Tang HY, Speicher DW. Comparison of extensive protein fractionation and repetitive LC-MS/MS analyses on depth of analysis for complex proteomes. J Proteome Res. 2010, 9(2), 1032-1040.
-
(2010)
J Proteome Res
, vol.9
, Issue.2
, pp. 1032-1040
-
-
Wang, H.1
Chang-Wong, T.2
Tang, H.Y.3
Speicher, D.W.4
-
55
-
-
66149135226
-
Prefractionation using microscale solution IEF
-
Joo WA, Speicher D. Prefractionation using microscale solution IEF. Methods Mol Biol. 2009, 519, 291-304.
-
(2009)
Methods Mol Biol
, vol.519
, pp. 291-304
-
-
Joo, W.A.1
Speicher, D.2
-
56
-
-
24944519450
-
Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns
-
Larsen MR, Thingholm TE, Jensen ON, Roepstorff P, Jørgensen TJ. Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns. Mol Cell Proteomics. 2005, 4(7), 873-886.
-
(2005)
Mol Cell Proteomics
, vol.4
, Issue.7
, pp. 873-886
-
-
Larsen, M.R.1
Thingholm, T.E.2
Jensen, O.N.3
Roepstorff, P.4
Jørgensen, T.J.5
-
57
-
-
80052378239
-
Titanium dioxide enrichment of sialic acid-containing glycopeptides
-
Palmisano G, Lendal SE, Larsen MR. Titanium dioxide enrichment of sialic acid-containing glycopeptides. Methods Mol Biol. 2011, 753, 309-322.
-
(2011)
Methods Mol Biol
, vol.753
, pp. 309-322
-
-
Palmisano, G.1
Lendal, S.E.2
Larsen, M.R.3
-
58
-
-
34948841606
-
Combination of peptide OFFGEL fractionation and label-free quantitation facilitated proteomics profiling of extraocular muscle
-
Fraterman S, Zeiger U, Khurana TS, Rubinstein NA, Wilm M. Combination of peptide OFFGEL fractionation and label-free quantitation facilitated proteomics profiling of extraocular muscle. Proteomics. 2007, 7(18), 3404-3416.
-
(2007)
Proteomics
, vol.7
, Issue.18
, pp. 3404-3416
-
-
Fraterman, S.1
Zeiger, U.2
Khurana, T.S.3
Rubinstein, N.A.4
Wilm, M.5
-
59
-
-
64549128270
-
The use of proteome similarity for the qualitative and quantitative profiling of reperfused myocardium
-
Vissers JP, Pons S, Hulin A, Tissier R, Berdeaux A, Connolly JB, Langridge JI, Geromanos SJ, Ghaleh B. The use of proteome similarity for the qualitative and quantitative profiling of reperfused myocardium. J Chromatogr B Analyt Technol Biomed Life Sci. 2009, 877(13), 1317-1326.
-
(2009)
J Chromatogr B Analyt Technol Biomed Life Sci
, vol.877
, Issue.13
, pp. 1317-1326
-
-
Vissers, J.P.1
Pons, S.2
Hulin, A.3
Tissier, R.4
Berdeaux, A.5
Connolly, J.B.6
Langridge, J.I.7
Geromanos, S.J.8
Ghaleh, B.9
-
60
-
-
79953719716
-
More than 100,000 detectable pep-tide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS
-
Michalski A, Cox J, Mann M. More than 100,000 detectable pep-tide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS. J Proteome Res. 2011, 10(4): 1785-1793.
-
(2011)
J Proteome Res
, vol.10
, Issue.4
, pp. 1785-1793
-
-
Michalski, A.1
Cox, J.2
Mann, M.3
-
61
-
-
77954751922
-
Peptide identification from mixture tandem mass spectra
-
Wang J, Pérez-Santiago J, Katz JE, Mallick P, Bandeira N. Peptide identification from mixture tandem mass spectra. Mol Cell Pro-teomics. 2010, 9(7), 1476-1485.
-
(2010)
Mol Cell Pro-teomics
, vol.9
, Issue.7
, pp. 1476-1485
-
-
Wang, J.1
Pérez-Santiago, J.2
Katz, J.E.3
Mallick, P.4
Bandeira, N.5
-
62
-
-
77955455399
-
Quantifying the impact of chimera MS/MS spectra on peptide identification in large scale proteomics tudies
-
Houel S, Abernathy R, Renganathan K, Meyer-Arendt K, Ahn N, Old WM. Quantifying the impact of chimera MS/MS spectra on peptide identification in large scale proteomics tudies. J Proteome Res. 2010, 9(8), 4152-4160.
-
(2010)
J Proteome Res
, vol.9
, Issue.8
, pp. 4152-4160
-
-
Houel, S.1
Abernathy, R.2
Renganathan, K.3
Meyer-Arendt, K.4
Ahn, N.5
Old, W.M.6
-
63
-
-
76149113930
-
Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry
-
Bern M, Finney G, Hoopmann MR, Merrihew G, Toth MJ, Mac-Coss MJ. Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry. Anal Chem. 2010, 82(3), 833-841.
-
(2010)
Anal Chem
, vol.82
, Issue.3
, pp. 833-841
-
-
Bern, M.1
Finney, G.2
Hoopmann, M.R.3
Merrihew, G.4
Toth, M.J.5
Mac-Coss, M.J.6
-
64
-
-
4444276814
-
Nanoflow LC/IMS-MS and LC/IMS-CID/MS of protein mixtures
-
Sowell RA, Koeniger SL, Valentine SJ, Moon MH, Clemmer DE. Nanoflow LC/IMS-MS and LC/IMS-CID/MS of protein mixtures. J Am Soc Mass Spectrom. 2004, 15(9), 1341-1353.
-
(2004)
J Am Soc Mass Spectrom
, vol.15
, Issue.9
, pp. 1341-1353
-
-
Sowell, R.A.1
Koeniger, S.L.2
Valentine, S.J.3
Moon, M.H.4
Clemmer, D.E.5
-
65
-
-
58149139271
-
Fundamentals of traveling wave ion mobility spectrometry
-
Shvartsburg AA, Smith RD. Fundamentals of traveling wave ion mobility spectrometry. Anal Chem. 2008, 80(24), 9689-9699.
-
(2008)
Anal Chem
, vol.80
, Issue.24
, pp. 9689-9699
-
-
Shvartsburg, A.A.1
Smith, R.D.2
|