Molecular analyses of the functional microbial community in composting by PCR-DGGE targeting the genes of the β-glucosidase

Bioresource Technology

Volumn 134, Issue , 2013, Pages 51-58

  Li, Hongtao ^a   Xu, Xiuhong ^a   Chen, Huihai ^a   Zhang, Ying ^a   Xu, Jie ^a   Wang, Jing ^a   Lu, Xinying ^a  

^a NORTHEAST AGRICULTURAL UNIVERSITY   (China)

Author keywords

Cellulase; Compost; DGGE; Microbial community; glucosidase

Indexed keywords

BACTERIA; COMPOSTING; ELECTROPHORESIS; FUNGI; MANURES; POLYMERASE CHAIN REACTION;

CELLULASE; COMPOST; DGGE; GLUCOSIDASE; MICROBIAL COMMUNITIES;

GENES;

BETA GLUCOSIDASE; CELLOBIOSE; CELLULASE; COPPER; ENZYME; EXOGLUCANASE; GLUCAN SYNTHASE; GLUCOSE; UNCLASSIFIED DRUG;

BACTERIUM; COMPOSTING; ENZYME ACTIVITY; FUNCTIONAL GROUP; FUNGUS; GENE EXPRESSION; MANURE; MICROBIAL COMMUNITY; MICROBIAL ECOLOGY; MOLECULAR ANALYSIS; POLYMERASE CHAIN REACTION; STRAW; SUCCESSION;

AMINO ACID SEQUENCE; ARTICLE; ASPERGILLUS; ASPERGILLUS NIGER; BACILLUS; BACTERIUM; BACTEROIDES FRAGILIS; CLOSTRIDIUM THERMOCELLUM; DENATURING GRADIENT GEL ELECTROPHORESIS; ENZYME ACTIVITY; FUNGUS; GENE SEQUENCE; MICROBIAL COMMUNITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PAENIBACILLUS; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; TEMPERATURE; THERMOBISPORA BISPORA;

EID: 84875243137     PISSN: 09608524     EISSN: 18732976     Source Type: Journal    
DOI: 10.1016/j.biortech.2013.01.077     Document Type: Article

References (35)

1. Alef K., Nannipieri P. Methods in Applied Soil Microbiology and Biochemistry: Enzyme Activities 1995, Academic Press, London.
2. Bao L., Huang Q., Chang L., Sun Q., Zhou J., Lu H. Cloning and characterization of two beta-glucosidase/xylosidase enzymes from yak rumen metagenome. Appl. Biochem. Biotechnol. 2012, 166:72-86.
3. Cañizares R., Benitez E., Ogunseitan O.A. Molecular analyses of beta-glucosidase diversity and function in soil. Eur. J. Soil Biol. 2011, 47:1-8.
4. Cantarel B.L., Coutinho P.M., Rancurel C., Bernard T., Lombard V., Henrissat B. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for glycogenomics. Nucleic Acids Res. 2009, 37:233-238.
5. Castaldi Paola, Garau Giovanni, Melis Pietro Maturity assessment of compost from municipal solid waste through the study of enzyme activities and water-soluble fractions. Waste Management. 2008, 28:534-540.
6. Cristóbal H.A., Schmidt A., Kothe E., Breccia J., Abate C.M. Characterization of inducible cold-active β-glucosidases from the psychrotolerant bacterium Shewanella sp. G5 isolated from a sub-Antarctic ecosystem. Enzym. Microb. Technol. 2009, 45:498-506.
7. Cunha-Queda A.C., Ribeiro H.M., Ramos A., Cabral F. Study of biochemical and microbiological parameters during composting of pine and eucalyptus bark. Biores. Technol. 2007, 98:3213-3220.
8. de Vries R.P., Visser J. Aspergillus enzymes involved in degradation of plant cell wall polysaccharides. Microbiol. Mol. Biol. Rev. 2001, 65:497-522.
9. Fonseca G.G., Heinzle E., Wittmann C., Gombert A.K. The yeast Kluyveromyces marxianus and its biotechnological potential. Appl. Microbiol. Biotechnol. 2008, 79:339-354.
10. Ganju, R.K., 1986. Isolation and characterization of polysaccharide degrading enzymes of Chaetomium thermophile var. coprophile. Ph. D. Thesis. Indian Institute of Science, Bangalore.
11. Geiger G., Furrer G., Funk F., Brandl H., Schulin R. Heavy metal effects on beta-glucosidase activity influenced by pH and buffer systems. J. Enzyme Inhib. 1999, 14:365-379.
12. Goyal S., Dhull S.K., Kapoor K.K. Chemical and biological changes during composting of different organic wastes and assessment of compost maturity. Biores. Technol. 2005, 96:1584-1591.
13. Guo X.L., Gu J., Gao H., Qin Q.J., Chen Z.X., Shao L., Chen L., Li H.L., Zhang W.J., Chen.S.N., Liu J. Effects of Cu on metabolisms and enzyme activities of microbial communities in the process of composting. Biores. Technol. 2012, 108:140-148.
14. Hayano K., Tubaki K. Origin and properties of β-glucosidase activity of tomato-field soil. Soil Biol. Biochem. 1985, 17:553-557.
15. Hayes M.B.H. Soil organic matter extraction, fractionation, and effects on soil structure. The Role of Organic Matter in Modern Agriculture 1986, 183-208. Martinus Nijhoff, Boston, MA. Y. Chen, Y. Avnimelech (Eds.).
16. Henrissat B. A classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem. J. 1991, 280:309-316.
17. Herr T. Secretion of cellulases and β-glucosides by Trichoderma viridae TTCC 1433 in submerged cultures on different substrates. Biotechnol. Bioeng. 1979, 21:1361-1363.
18. Insam H., de Bertoldi M. Microbiology of the composting process. Compost Science and Technology 2007, 26-48. Elsevier, Amsterdam, The Netherlands. L.F. Diaz, M. de Bertoldi, W. Bidlingmaier, E. Stentiford (Eds.).
19. Ishii K., Fukui M., Takii S. Microbial succession during a composting process as evaluated by denaturing gradient gel electrophoresis analysis. J. Appl. Microbiol. 2000, 89:768-777.
20. Krogh K.B.R.M., Harris P.V., Olsen C.L., Johansen K.S., Hojer-Pedersen J., Borjesson J., Olsson L. Characterization and kinetic analysis of a thermostable GH3 β-glucosidase from Penicillium brasilianum. Appl. Microbiol. Biotechnol. 2010, 86:143-154.
21. Lammirato C., Miltner A., Wick L.Y., Kästner M. Hydrolysis of cellobiose by beta-glucosidase in the presence of soil minerals - interactions at solid-liquid interfaces and effects on enzyme activity levels. Soil Biol. Biochem. 2010, 42:2203-2210.
22. Liu J., Xu X.H., Li H.T., Xu Y. Effect of microbiological inocula on chemical and physical properties and microbial community of cow manure compost. Biomass Bioenergy 2011, 35:3433-3439.
23. Lynd L.R., Weimer P.J., Van Z.W.H., Pretorius I.S. Microbial cellulose utilization: fundamentals and biotechnology. Microbiol. Mol. Biol. Rev. 2002, 66:506-577.
24. Maeda Koki, Hanajima Dai, Morioka Riki, Osada Takashi Characterization and spatial distribution of bacterial communities within passively aerated cattle manure composting piles. Biores. Technol. 2010, 101:9631-9637.
25. Maheshwari R., Bharadwaj G., Bhat M.K. Thermophilic fungi: their physiology and enzymes. Microbiol. Mol. Biol. Rev. 2000, 64:461-488.
26. Opassiri R., Pomthong B., Akiyama T., Nakphaichit M., Onkoksoong T., Ketudat-Cairns M., Ketudat C.J.R. A stress-induced rice beta-glucosidase represents a new subfamily of glycosyl hydrolase family 5 containing a fascin-like domain. Biochem. J. 2007, 408:241-249.
27. Pandey A.K., Gaind S., Ali A., Nain L. Effect of bioaugmentation and nitrogen supplementation on composting of paddy straw. Biodegradation 2009, 20:293-306.
28. Ros M., Garcia C., Hernández T. A full-scale study of treatment of pig slurry by composting: kinetic changes in chemical and microbial properties. Waste Manag. 2006, 26:1108-1118.
29. Singhania R.R., Patel A.K., Sukumaran R.K., Larroche C., Pandey A. Role and significance of beta-glucosidases in the hydrolysis of cellulose for bioethanol production. Biores. Technol. 2013, 127:500-508.
30. Tiquia S.M., Wan J.H.C., Tam N.F.Y. Extracellular enzyme profiles during co-composting of poultry manure and yard trimmings. Process Biochem. 2001, 36:813-820.
31. Tiquia S.M. Evolution of extracellular enzyme activities during manure composting. J. Appl. Microbiol. 2002, 92:764-775.
32. Vargas-García M.C., Suárez-Estrella F., López M.J., Moreno J. Microbial population dynamics and enzyme activities in composting processes with different starting materials. Waste Manag. 2010, 30:771-778.
33. Yu H., Zeng G., Huang H., Xi X., Wang R., Huang D., Huang G., Li J. Microbial community succession and lignocellulose degradation during agricultural waste composting. Biodegradation 2007, 18:793-802.
34. Zeng G., Yu M., Chen Y., Huang D., Zhang J., Huang H., Jiang R., Yu Z. Effects of inoculation with Phanerochaete chrysosporium at various time points on enzyme activities during agricultural waste composting. Bioresour. Technol. 2010, 101:222-227.
35. Zeng G.M., Huang D.L., Huang G.H., Hu T.J., Jiang X.Y., Feng C.L., Chen Y.N., Tang L., Liu H.L. Composting of lead-contaminated solid waste with inocula of white-rot fungus. Bioresour. Technol. 2007, 98:320-326.