Large interrelated clusters of repetitive elements (REs) and RE arrays predominantly represent reference mouse chromosome y

Chromosome Research

Volumn 21, Issue 1, 2013, Pages 15-26

  Lee, Kang Hoon ^a   Kim, Woo Chan ^b   Shin, Kyung Seop ^b   Roh, Jeong Kyu ^b   Cho, Dong Ho ^b   Cho, Kiho ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b Korea Advanced Institute of Science and Technology (KAIST)   (South Korea)

Author keywords

Chromosome structure; Cluster of REs and RE arrays; Interrelated clusters; Mouse chromosome Y; Repetitive element array; Repetitive elements

Indexed keywords

ARTICLE; CHROMOSOME STRUCTURE; CONTROLLED STUDY; GENE LOCUS; GENE SEQUENCE; GENETIC IDENTIFICATION; HUMAN; HUMAN CHROMOSOME; INTRON; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; REPETITIVE ELEMENT; Y CHROMOSOME;

EID: 84875225975     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-012-9334-8     Document Type: Article

References (19)

1. Akeson EC and Davisson MT (2001) Mitotic chromosome preparations from mouse cells for karyotyping. Curr Protoc Hum Genet Chapter 4: Unit4 10.
2. CE Bishop MJ Mitchell 1999 Mouse Y chromosome Mamm Genome 10 10 962 10501963 10.1007/s003359901140 1:CAS:528:DyaK1MXmsFGmtb4%3D
3. FS Collins ES Lander J Rogers, et al. 2004 Finishing the euchromatic sequence of the human genome Nature 431 7011 931 945 10.1038/nature03001
4. HJ Cooke J Schmidtke JR Gosden 1982 Characterisation of a human Y chromosome repeated sequence and related sequences in higher primates Chromosoma 87 5 491 502 7182127 10.1007/BF00333470 1:CAS:528:DyaL3sXks1GhtLo%3D
5. CM Fraser JA Eisen SL Salzberg 2000 Microbial genome sequencing Nature 406 6797 799 803 10963611 10.1038/35021244 1:CAS:528:DC%2BD3cXmt1CntLg%3D
6. C Gilissen A Hoischen HG Brunner JA Veltmen 2012 Disease gene identification strategies for exome sequencing Eur J Hum Genet 20 5 490 497 22258526 10.1038/ejhg.2011.258 1:CAS:528:DC%2BC38XlvV2kur8%3D
7. C Gonzaga-Jauregui JR Lupski RA Gibbs 2012 Human genome sequencing in health and disease Annu Rev Med 63 35 61 22248320 10.1146/annurev-med-051010- 162644 1:CAS:528:DC%2BC38XisleksL8%3D
8. SG Gregory M Sekhon J Schein, et al. 2002 A physical map of the mouse genome Nature 418 6899 743 750 12181558 10.1038/nature00957 1:CAS:528: DC%2BD38XmtV2nsr8%3D
9. K Guda MB Upender G Belinsky, et al. 2004 Carcinogen-induced colon tumors in mice are chromosomally stable and are characterized by low-level microsatellite instability Oncogene 23 21 3813 3821 15021908 10.1038/sj.onc.1207489 1:CAS:528:DC%2BD2cXjs1ylt74%3D
10. MA Jobling C Tyler-Smith 2003 The human Y chromosome: an evolutionary marker comes of age Nat Rev Genet 4 8 598 612 12897772 10.1038/nrg1124 1:CAS:528:DC%2BD3sXlvFaqt74%3D
11. J Kaiser 2008 DNA sequencing. A plan to capture human diversity in 1000 genomes Science 319 5862 395 18218868 10.1126/science.319.5862.395 1:CAS:528:DC%2BD1cXhtl2qsbs%3D
12. WC Kim KH Lee KS Shin, et al. 2012 REMiner-II: a tool for rapid identification and configuration of repetitive element arrays from large mammalian chromosomes as a single query Genomics 100 3 131 140 22750555 10.1016/j.ygeno.2012.06.006 1:CAS:528:DC%2BC38XhtVakt77J
13. C Lee CC Morton 2008 Structural genomic variation and personalized medicine N Engl J Med 358 7 740 741 18272898 10.1056/NEJMcibr0708452 1:CAS:528:DC%2BD1cXhvVegtbs%3D
14. KH Lee YK Lee DN Kwon, et al. 2011 Identification of a unique library of complex, but ordered, arrays of repetitive elements in the human genome and implication of their potential involvement in pathobiology Exp Mol Pathol 90 3 300 311 21376035 10.1016/j.yexmp.2011.02.007 1:CAS:528:DC%2BC3MXlvVyht74%3D
15. YK Lee KH Lee SG Iim, et al. 2012 Unique profile of ordered arrangements of repetitive elements in the C57BL/6J mouse genome implicating their functional roles PLoS One 7 4 e35156 22529984 10.1371/journal.pone.0035156 1:CAS:528:DC%2BC38XmsVGgt7c%3D
16. H Skaletsky T Kuroda-Kawaguchi PJ Minx, et al. 2003 The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes Nature 423 6942 825 837 12815422 10.1038/nature01722 1:CAS:528:DC%2BD3sXks1Kmtbk%3D
17. L Skrisovska CF Bourgeois R Stefl, et al. 2007 The testis-specific human protein RBMY recognizes RNA through a novel mode of interaction EMBO Rep 8 4 372 379 17318228 10.1038/sj.embor.7400910 1:CAS:528:DC%2BD2sXjs1yqtLo%3D
18. RH Waterston K Lindblad-Toh E Birney, et al. 2002 Initial sequencing and comparative analysis of the mouse genome Nature 420 6915 520 562 12466850 10.1038/nature01262 1:CAS:528:DC%2BD38Xpt1WhsLw%3D
19. DA Wheeler M Srinivasan M Egholm, et al. 2008 The complete genome of an individual by massively parallel DNA sequencing Nature 452 7189 872 876 18421352 10.1038/nature06884 1:CAS:528:DC%2BD1cXkvVSisL0%3D