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Volumn 29, Issue 6, 2013, Pages 790-791

Fragment recruitment on metabolic pathways: Comparative metabolic profiling of metagenomes and metatranscriptomes

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; GENE EXPRESSION PROFILING; GENETICS; METABOLISM; METABOLOME; METAGENOME; METAGENOMICS; METHODOLOGY;

EID: 84875123582     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts721     Document Type: Article
Times cited : (6)

References (14)
  • 1
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul,S.F. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
    • (1990) J. Mol. Biol. , vol.215 , pp. 403-410
    • Altschul, S.F.1
  • 2
    • 78449297680 scopus 로고    scopus 로고
    • SmashCommunity: A metagenomic annotation and analysis tool
    • Arumugam,M. et al. (2010) SmashCommunity: a metagenomic annotation and analysis tool. Bioinformatics, 26, 2977-2978.
    • (2010) Bioinformatics , vol.26 , pp. 2977-2978
    • Arumugam, M.1
  • 3
    • 0034069495 scopus 로고    scopus 로고
    • Gene Ontology: Tool for the unification of biology
    • Ashburner,M. et al. (2000) Gene Ontology: tool for the unification of biology. Nat. Genet., 25, 25-29.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 4
    • 79959216386 scopus 로고    scopus 로고
    • ModEnzA: Accurate identification of metabolic enzymes using function specific profile HMMs with optimized discrimination threshold and modified emission probabilities
    • Article ID 743782
    • Desai,D.K. et al. (2011) ModEnzA: accurate identification of metabolic enzymes using function specific profile HMMs with optimized discrimination threshold and modified emission probabilities. Adv. Bioinformatics, 2011, Article ID 743782.
    • (2011) Adv. Bioinformatics, 2011
    • Desai, D.K.1
  • 6
    • 33744804299 scopus 로고    scopus 로고
    • Metagenomic analysis of the human distal gut microbiome
    • Gill,S.R. et al. (2006) Metagenomic analysis of the human distal gut microbiome. Science, 312, 1355-1359.
    • (2006) Science , vol.312 , pp. 1355-1359
    • Gill, S.R.1
  • 7
    • 33847702910 scopus 로고    scopus 로고
    • MEGAN analysis of metagenomic data
    • Huson,D.H. et al. (2007) MEGAN analysis of metagenomic data. Genome Res., 17, 377-386.
    • (2007) Genome Res. , vol.17 , pp. 377-386
    • Huson, D.H.1
  • 8
    • 78149423315 scopus 로고    scopus 로고
    • Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function
    • Inskeep,W.P. et al. (2010) Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function. Plos One, 5, e9773.
    • (2010) Plos One , vol.5
    • Inskeep, W.P.1
  • 9
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of large-scale molecular data sets
    • Kanehisa,M. et al. (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res., 40, D109-D114.
    • (2012) Nucleic Acids Res. , vol.40
    • Kanehisa, M.1
  • 10
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics RAST server-A public resource for the automatic phylogenetic and functional analysis of metagenomes
    • Meyer,F. et al. (2008) The metagenomics RAST server-a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics, 9, 386.
    • (2008) BMC Bioinformatics , vol.9 , pp. 386
    • Meyer, F.1
  • 11
    • 77951945504 scopus 로고    scopus 로고
    • Identifying biologically relevant differences between metagenomic communities
    • Parks,D.H. and Beiko,R.G. (2010) Identifying biologically relevant differences between metagenomic communities. Bioinformatics, 26, 715-721.
    • (2010) Bioinformatics , vol.26 , pp. 715-721
    • Parks, D.H.1    Beiko, R.G.2
  • 12
    • 84858077472 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Punta,M. et al. (2012) The Pfam protein families database. Nucleic Acids Res., 40, D290-D301.
    • (2012) Nucleic Acids Res. , vol.40
    • Punta, M.1
  • 13
    • 78651266825 scopus 로고    scopus 로고
    • Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: The CAMERA resource
    • Sun,S. et al. (2011) Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource. Nucleic Acids Res., 39, D546-D551.
    • (2011) Nucleic Acids Res. , vol.39
    • Sun, S.1
  • 14
    • 79959954965 scopus 로고    scopus 로고
    • IPath2.0: Interactive pathway explorer
    • Yamada,T. et al. (2011) iPath2.0: interactive pathway explorer. Nucleic Acids Res, 39, W412-W415.
    • (2011) Nucleic Acids Res , vol.39
    • Yamada, T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.