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Volumn 5, Issue 3, 2012, Pages 266-273

The computational analysis of human testis transcriptome reveals closer ties to pluripotency

Author keywords

ESC; microarray; pluripotency; spermatogenesis; testis

Indexed keywords

TRANSCRIPTOME; UBIQUITIN;

EID: 84874859452     PISSN: 09741208     EISSN: 19984766     Source Type: Journal    
DOI: 10.4103/0974-1208.106339     Document Type: Article
Times cited : (7)

References (33)
  • 2
    • 34249676293 scopus 로고    scopus 로고
    • Analysis of gene expression in bovine testis tissue prior to ectopic testis tissue xenografting and during the grafting period
    • DOI 10.1095/biolreprod.106.058222
    • Schmidt JA, de Avila JM, McLean DJ. Analysis of gene expression in bovine testis tissue prior to ectopic testis tissue xenografting and during the grafting period. Biol Reprod 2007;76:1071-80. (Pubitemid 46835016)
    • (2007) Biology of Reproduction , vol.76 , Issue.6 , pp. 1071-1080
    • Schmidt, J.A.1    De Avila, J.M.2    McLean, D.J.3
  • 3
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena M, Shalon D, Davis RW, Brown PO. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995;270:467-70.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 4
    • 33746683125 scopus 로고    scopus 로고
    • Analysis of microarray experiments of gene expression profiling
    • Adi L, Tarca RR, Sorin Draghici. Analysis of microarray experiments of gene expression profiling. Am J Obstet Gynecol 2006;195:16.
    • (2006) Am J Obstet Gynecol , vol.195 , pp. 16
    • Adi, L.1    Tarca, R.R.2    Draghici, S.3
  • 6
    • 70249138369 scopus 로고    scopus 로고
    • Interesting times for microarray expression profiling
    • Hey Y, Pepper SD. Interesting times for microarray expression profiling. Brief Funct Genomic Proteomic 2009;8:170-3.
    • (2009) Brief Funct Genomic Proteomic , vol.8 , pp. 170-173
    • Hey, Y.1    Pepper, S.D.2
  • 7
    • 25444465171 scopus 로고    scopus 로고
    • Global transcriptome analysis of the C57BL/6J mouse testis by SAGE evidence for nonrandom gene order
    • Divina P, Vlcek C, Strnad P, Paces V, Forejt J. Global transcriptome analysis of the C57BL/6J mouse testis by SAGE: evidence for nonrandom gene order. BMC Genomics 2005;6:29.
    • (2005) BMC Genomics , vol.6 , pp. 29
    • Divina, P.1    Vlcek, C.2    Strnad, P.3    Paces, V.4    Forejt, J.5
  • 9
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R, Domrachev M, Lash AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 2002;30:207-10. (Pubitemid 34679544)
    • (2002) Nucleic Acids Research , vol.30 , Issue.1 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 11
    • 77956387042 scopus 로고    scopus 로고
    • Mapping the first stages of mesoderm commitment during differentiation of human embryonic stem cells
    • Evseenko D, Zhu Y, Schenke-Layland K, Kuo J, Latour B, Ge S, et al. Mapping the first stages of mesoderm commitment during differentiation of human embryonic stem cells. Proc Natl Acad Sci USA 2010;107:13742-7.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 13742-13747
    • Evseenko, D.1    Zhu, Y.2    Schenke-Layland, K.3    Kuo, J.4    Latour, B.5    Ge, S.6
  • 13
    • 77954825618 scopus 로고    scopus 로고
    • Decoded calreticulin-deficient embryonic stem cell transcriptome resolves latent cardiophenotype
    • Faustino RS, Chiriac A, Niederlander NJ, Nelson TJ, Behfar A, Mishra PK, et al. Decoded calreticulin-deficient embryonic stem cell transcriptome resolves latent cardiophenotype. Stem Cells 2010;28:1281-91.
    • (2010) Stem Cells , vol.28 , pp. 1281-1291
    • Faustino, R.S.1    Chiriac, A.2    Niederlander, N.J.3    Nelson, T.J.4    Behfar, A.5    Mishra, P.K.6
  • 18
    • 36549052737 scopus 로고    scopus 로고
    • A microarray analysis for differential gene expression in the soybean genome using Bioconductor and R
    • DOI 10.1093/bib/bbm043
    • Gregory Alvord W, Roayaei JA, Quinones OA, Schneider KT. A microarray analysis for differential gene expression in the soybean genome using Bioconductor and R. Brief Bioinform 2007;8:415-31. (Pubitemid 350186921)
    • (2007) Briefings in Bioinformatics , vol.8 , Issue.6 , pp. 415-431
    • Gregory Alvord, W.1    Roayaei, J.A.2    Quinones, O.A.3    Schneider, K.T.4
  • 20
    • 34547830867 scopus 로고    scopus 로고
    • Comparative analysis of microarray normalization procedures: Effects on reverse engineering gene networks
    • DOI 10.1093/bioinformatics/btm201
    • Lim WK, Wang K, Lefebvre C, Califano A. Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks. Bioinformatics 2007;23:i282-8. (Pubitemid 47244411)
    • (2007) Bioinformatics , vol.23 , Issue.13
    • Lim, W.K.1    Wang, K.2    Lefebvre, C.3    Califano, A.4
  • 21
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Article3
    • Smyth GK. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 2004;3:Article3.
    • (2004) Stat Appl Genet Mol Biol , vol.3
    • Smyth, G.K.1
  • 22
    • 77953916879 scopus 로고
    • Controlling the false discovery rate: A practical and powerful appraoch to multiple testing
    • Benjamini Y. H.Y. Controlling the false discovery rate: A practical and powerful appraoch to multiple testing. J R Statis Soc 1995;57:12.
    • (1995) J R Statis Soc , vol.57 , pp. 12
    • Benjamini, Y.H.Y.1
  • 23
  • 24
    • 66349132579 scopus 로고    scopus 로고
    • From disease ontology to disease-ontology lite: Statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations
    • Du P, Feng G, Flatow J, Song J, Holko M, Kibbe WA, et al. From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations. Bioinformatics 2009;25:163-8.
    • (2009) Bioinformatics , vol.25 , pp. 163-168
    • Du, P.1    Feng, G.2    Flatow, J.3    Song, J.4    Holko, M.5    Kibbe, W.A.6
  • 25
    • 63449111012 scopus 로고    scopus 로고
    • Assessing the quality of hybridized RNA in Affymetrix GeneChips using linear regression
    • Li M, Reilly C. Assessing the quality of hybridized RNA in Affymetrix GeneChips using linear regression. J Biomol Tech 2008;19:122-8.
    • (2008) J Biomol Tech , vol.19 , pp. 122-128
    • Li, M.1    Reilly, C.2
  • 26
    • 39049174827 scopus 로고    scopus 로고
    • Induction of pluripotent stem cells from mouse fibroblast cultures
    • Yamanaka S, Takahashi K. Induction of pluripotent stem cells from mouse fibroblast cultures. Tanpakushitsu Kakusan Koso 2006;51:2346-51.
    • (2006) Tanpakushitsu Kakusan Koso , vol.51 , pp. 2346-2351
    • Yamanaka, S.1    Takahashi, K.2
  • 27
    • 0346250854 scopus 로고    scopus 로고
    • The Transcriptome Profile of Human Embryonic Stem Cells as Defined by SAGE
    • Richards M, Tan SP, Tan JH, Chan WK, Bongso A. The transcriptome profile of human embryonic stem cells as defined by SAGE. Stem Cells 2004;22:51-64. (Pubitemid 38018781)
    • (2004) Stem Cells , vol.22 , Issue.1 , pp. 51-64
    • Richards, M.1    Tan, S.-P.2    Tan, J.-H.3    Chan, W.-K.4    Bongso, A.5
  • 29
    • 9244232788 scopus 로고    scopus 로고
    • Testis-specific transcriptional control
    • DOI 10.1016/j.gene.2004.08.021, PII S0378111904005189
    • Grimes SR. Testis-specific transcriptional control. Gene 2004;343:11-22. (Pubitemid 39551026)
    • (2004) Gene , vol.343 , Issue.1 , pp. 11-22
    • Grimes, S.R.1
  • 30
    • 68649118090 scopus 로고    scopus 로고
    • A critical evaluation of the ubiquitin-proteasome system in Parkinson's disease
    • Cook C, Petrucelli L. A critical evaluation of the ubiquitin-proteasome system in Parkinson's disease. Biochim Biophys Acta 2009;1792:664-75.
    • (2009) Biochim Biophys Acta , vol.1792 , pp. 664-675
    • Cook, C.1    Petrucelli, L.2
  • 31
    • 0037405064 scopus 로고    scopus 로고
    • Ubiquitin-dependent proteolysis in mammalian spermatogenesis, fertilization, and sperm quality control: Killing three birds with one stone
    • Sutovsky P. Ubiquitin-dependent proteolysis in mammalian spermatogenesis, fertilization, and sperm quality control: Killing three birds with one stone. Microsc Res Tech 2003;61:15.
    • (2003) Microsc Res Tech , vol.61 , pp. 15
    • Sutovsky, P.1
  • 32
    • 65249132308 scopus 로고    scopus 로고
    • The molecular signature of spermatogonial stem/progenitor cells in the 6-day-old mouse testis
    • Kokkinaki M, Lee TL, He Z, Jiang J, Golestaneh N, Hofmann MC, et al. The molecular signature of spermatogonial stem/progenitor cells in the 6-day-old mouse testis. Biol Reprod 2009;80:11.
    • (2009) Biol Reprod , vol.80 , pp. 11
    • Kokkinaki, M.1    Lee, T.L.2    He, Z.3    Jiang, J.4    Golestaneh, N.5    Hofmann, M.C.6
  • 33
    • 77949334637 scopus 로고    scopus 로고
    • ATP dependent chromatin remodeling enzymes in embryonic stem cells
    • Saladi SV, de la Serna IL. ATP dependent chromatin remodeling enzymes in embryonic stem cells. Stem Cell Rev 2010;6:62-73.
    • (2010) Stem Cell Rev , vol.6 , pp. 62-73
    • Saladi, S.V.1    De La Serna, I.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.