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Volumn 22, Issue 1, 2004, Pages 51-64

The Transcriptome Profile of Human Embryonic Stem Cells as Defined by SAGE

Author keywords

Human embryonic stem cells; NANOG; POU5FI; REXI; SAGE; SOX2; Transcriptome

Indexed keywords

DNA METHYLTRANSFERASE 3B; GENE PRODUCT; LEUKEMIA INHIBITORY FACTOR;

EID: 0346250854     PISSN: 10665099     EISSN: None     Source Type: Journal    
DOI: 10.1634/stemcells.22-1-51     Document Type: Article
Times cited : (391)

References (51)
  • 1
    • 0005302510 scopus 로고
    • The growth of inner cell mass cells from human blastocysts
    • Bongso A, Fong CY, Ng SC et al. The growth of inner cell mass cells from human blastocysts (Abstract). Theriogenology 1994;41:161.
    • (1994) Theriogenology , vol.41 , pp. 161
    • Bongso, A.1    Fong, C.Y.2    Ng, S.C.3
  • 2
    • 0028077574 scopus 로고
    • Isolation and culture of inner cell mass cells from human blastocysts
    • Bongso A, Fong CY, Ng SC et al. Isolation and culture of inner cell mass cells from human blastocysts. Hum Reprod 1994;9:2110-2117.
    • (1994) Hum Reprod , vol.9 , pp. 2110-2117
    • Bongso, A.1    Fong, C.Y.2    Ng, S.C.3
  • 3
    • 0032491416 scopus 로고    scopus 로고
    • Embryonic stem cell lines derived from human blastocysts
    • Thompson JA, Itskovitz-Eldor J, Shapiro SS et al. Embryonic stem cell lines derived from human blastocysts. Science 1998;282:1145-1147.
    • (1998) Science , vol.282 , pp. 1145-1147
    • Thompson, J.A.1    Itskovitz-Eldor, J.2    Shapiro, S.S.3
  • 4
    • 0035793104 scopus 로고    scopus 로고
    • Human embryonic germ cell derivatives express a broad range of developmentally distinct markers and proliferate extensively in vitro
    • Shamblott MJ, Axelman J, Wang S et al. Human embryonic germ cell derivatives express a broad range of developmentally distinct markers and proliferate extensively in vitro. Proc Natl Acad Sci USA 2001;98:113-118.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 113-118
    • Shamblott, M.J.1    Axelman, J.2    Wang, S.3
  • 5
    • 0034101804 scopus 로고    scopus 로고
    • Embryonic stem cell lines from human blastocysts: Somatic differentiation in vitro
    • Reubinoff BE, Pera MF, Fong CY et al. Embryonic stem cell lines from human blastocysts: somatic differentiation in vitro. Nat Biotechnol 2000;18:399-404.
    • (2000) Nat Biotechnol , vol.18 , pp. 399-404
    • Reubinoff, B.E.1    Pera, M.F.2    Fong, C.Y.3
  • 6
    • 0035522757 scopus 로고    scopus 로고
    • Human embryonic stem cells: Culture, differentiation, and genetic modification for regenerative medicine applications
    • Lebkowski JS, Gold J, Xu C et al. Human embryonic stem cells: culture, differentiation, and genetic modification for regenerative medicine applications. Cancer J Suppl 2001;2:S83-S93.
    • (2001) Cancer J Suppl , vol.2
    • Lebkowski, J.S.1    Gold, J.2    Xu, C.3
  • 7
    • 0035200623 scopus 로고    scopus 로고
    • In vitro differentiation of transplantable neural precursors from human embryonic stem cells
    • Zhang SC, Wernig M, Duncan ID et al. In vitro differentiation of transplantable neural precursors from human embryonic stem cells. Nat Biotechnol 2001;19:1129-1133.
    • (2001) Nat Biotechnol , vol.19 , pp. 1129-1133
    • Zhang, S.C.1    Wernig, M.2    Duncan, I.D.3
  • 8
    • 0035434048 scopus 로고    scopus 로고
    • Insulin production by human embryonic stem cells
    • Assady S, Maor G, Amit M et al. Insulin production by human embryonic stem cells. Diabetes 2001;50:1691-1697.
    • (2001) Diabetes , vol.50 , pp. 1691-1697
    • Assady, S.1    Maor, G.2    Amit, M.3
  • 9
    • 0037007042 scopus 로고    scopus 로고
    • Endothelial cells derived from human embryonic stem cells
    • Levenberg S, Golub JS, Amit M et al. Endothelial cells derived from human embryonic stem cells. Proc Natl Acad Sci USA 2002;99:4391-4396.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 4391-4396
    • Levenberg, S.1    Golub, J.S.2    Amit, M.3
  • 10
    • 0036358974 scopus 로고    scopus 로고
    • Embryonic stem cells provide a powerful and versatile model system
    • Rizzino A. Embryonic stem cells provide a powerful and versatile model system. Vitam Horm 2002;64:1-42.
    • (2002) Vitam Horm , vol.64 , pp. 1-42
    • Rizzino, A.1
  • 11
    • 0035991647 scopus 로고    scopus 로고
    • Preimplantation human embryos and embryonic stem cells show comparable expression of stage-specific embryonic antigens
    • Henderson JK, Draper JS, Baillie HS et al. Preimplantation human embryos and embryonic stem cells show comparable expression of stage-specific embryonic antigens. STEM CELLS 2002;20:329-337.
    • (2002) STEM CELLS , vol.20 , pp. 329-337
    • Henderson, J.K.1    Draper, J.S.2    Baillie, H.S.3
  • 12
    • 19044399171 scopus 로고    scopus 로고
    • Stem cells. Are any two cell lines the same?
    • Vogel G. Stem cells. Are any two cell lines the same? Science 2002;295:1820.
    • (2002) Science , vol.295 , pp. 1820
    • Vogel, G.1
  • 13
    • 0036714330 scopus 로고    scopus 로고
    • Human feeders support prolonged undifferentiated growth of human inner cell masses and embryonic stem cells
    • Richards M, Fong CY, Chan WK et al. Human feeders support prolonged undifferentiated growth of human inner cell masses and embryonic stem cells. Nat Biotechnol 2002;20:933-936.
    • (2002) Nat Biotechnol , vol.20 , pp. 933-936
    • Richards, M.1    Fong, C.Y.2    Chan, W.K.3
  • 14
    • 0034070944 scopus 로고    scopus 로고
    • DNA microarray analyses of genes regulated during the differentiation of embryonic stem cells
    • Kelly DL, Rizzino A. DNA microarray analyses of genes regulated during the differentiation of embryonic stem cells. Mol Reprod Dev 2000;56:113-123.
    • (2000) Mol Reprod Dev , vol.56 , pp. 113-123
    • Kelly, D.L.1    Rizzino, A.2
  • 15
    • 0037131389 scopus 로고    scopus 로고
    • "Stemness": Transcriptional profiling of embryonic and adult stem cells
    • Ramalho-Santos M, Yoon S, Matsuzaki Y et al. "Stemness": transcriptional profiling of embryonic and adult stem cells. Science 2002;298:597-600.
    • (2002) Science , vol.298 , pp. 597-600
    • Ramalho-Santos, M.1    Yoon, S.2    Matsuzaki, Y.3
  • 16
    • 0037130961 scopus 로고    scopus 로고
    • A stem cell molecular signature
    • Ivanova NB, Dimos JT, Schaniel C et al. A stem cell molecular signature. Science 2002;298:601-604.
    • (2002) Science , vol.298 , pp. 601-604
    • Ivanova, N.B.1    Dimos, J.T.2    Schaniel, C.3
  • 17
    • 0034028901 scopus 로고    scopus 로고
    • Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells
    • Niwa H, Miyazaki J, Smith AG. Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells. Nat Genet 2000;24:372-376.
    • (2000) Nat Genet , vol.24 , pp. 372-376
    • Niwa, H.1    Miyazaki, J.2    Smith, A.G.3
  • 18
    • 0037227099 scopus 로고    scopus 로고
    • Multipotent cell lineages in early mouse development depend on SOX2 function
    • Avilion AA, Nicolis SK, Pevny LH et al. Multipotent cell lineages in early mouse development depend on SOX2 function. Genes Dev 2003;17:126-140.
    • (2003) Genes Dev , vol.17 , pp. 126-140
    • Avilion, A.A.1    Nicolis, S.K.2    Pevny, L.H.3
  • 19
    • 0032582513 scopus 로고    scopus 로고
    • Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4
    • Nichols J, Zevnik B, Anastassiadis K et al. Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4. Cell 1998;95:379-391.
    • (1998) Cell , vol.95 , pp. 379-391
    • Nichols, J.1    Zevnik, B.2    Anastassiadis, K.3
  • 20
    • 0038143611 scopus 로고    scopus 로고
    • Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells
    • Chambers I, Colby D, Robertson M et al. Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells. Cell 2003;113:643-655.
    • (2003) Cell , vol.113 , pp. 643-655
    • Chambers, I.1    Colby, D.2    Robertson, M.3
  • 21
    • 0037806031 scopus 로고    scopus 로고
    • The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells
    • Mitsui K, Tokuzawa Y, Itoh H et al. The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells. Cell 2003;113:631-642.
    • (2003) Cell , vol.113 , pp. 631-642
    • Mitsui, K.1    Tokuzawa, Y.2    Itoh, H.3
  • 22
  • 23
    • 0034641730 scopus 로고    scopus 로고
    • Identification of diverse nerve growth factor-regulated genes by serial analysis of gene expression (SAGE) profiling
    • Angelastro JM, Klimaschewski L, Tang S et al. Identification of diverse nerve growth factor-regulated genes by serial analysis of gene expression (SAGE) profiling. Proc Natl Acad Sci USA 2000;97:10424-10429.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 10424-10429
    • Angelastro, J.M.1    Klimaschewski, L.2    Tang, S.3
  • 24
    • 0037143731 scopus 로고    scopus 로고
    • An anatomy of normal and malignant gene expression
    • Boon K, Osorio EC, Greenhut SF et al. An anatomy of normal and malignant gene expression. Proc Natl Acad Sci USA 2002;99:11287-11292.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 11287-11292
    • Boon, K.1    Osorio, E.C.2    Greenhut, S.F.3
  • 25
    • 0037195213 scopus 로고    scopus 로고
    • Statistical evaluation of SAGE libraries: Consequences for experimental design
    • Ruijter JM, Van Kampen VHC, Baas F. Statistical evaluation of SAGE libraries: consequences for experimental design. Physiol Genomics 2002;11:37-44.
    • (2002) Physiol Genomics , vol.11 , pp. 37-44
    • Ruijter, J.M.1    Van Kampen, V.H.C.2    Baas, F.3
  • 26
    • 0035704880 scopus 로고    scopus 로고
    • SAGE identification of gene transcripts with profiles unique to pluripotent mouse R1 embryonic stem cells
    • Anisimov SV, Tarasov KV, Tweedie D et al. SAGE identification of gene transcripts with profiles unique to pluripotent mouse R1 embryonic stem cells. Genomics 2002;79:170-176.
    • (2002) Genomics , vol.79 , pp. 170-176
    • Anisimov, S.V.1    Tarasov, K.V.2    Tweedie, D.3
  • 27
    • 0345688742 scopus 로고    scopus 로고
    • Comparative evaluation of various human feeders for prolonged undifferentiated growth of human embryonic stem cells
    • Richards M, Tan S, Fong CY et al. Comparative evaluation of various human feeders for prolonged undifferentiated growth of human embryonic stem cells. STEM CELLS 2003;21:546-556.
    • (2003) STEM CELLS , vol.21 , pp. 546-556
    • Richards, M.1    Tan, S.2    Fong, C.Y.3
  • 28
    • 0023884684 scopus 로고
    • Biochemical and genetic analysis of the OKa blood group antigen
    • Williams BP, Daniels GL, Pym B et al. Biochemical and genetic analysis of the OKa blood group antigen. Immunogenetics 1988;27:322-329.
    • (1988) Immunogenetics , vol.27 , pp. 322-329
    • Williams, B.P.1    Daniels, G.L.2    Pym, B.3
  • 29
    • 0036186555 scopus 로고    scopus 로고
    • Blue-white selection step enhances the yield of SAGE concatemers
    • Angelastro MM, Ryu EJ, Torocsik B et al. Blue-white selection step enhances the yield of SAGE concatemers. Biotechniques 2002;32:484, 486.
    • (2002) Biotechniques , vol.32 , pp. 484
    • Angelastro, M.M.1    Ryu, E.J.2    Torocsik, B.3
  • 30
    • 0037126025 scopus 로고    scopus 로고
    • Identifying novel transcripts and novel genes in the human genome by using novel SAGE tags
    • Chen J, Sun M, Lee S et al. Identifying novel transcripts and novel genes in the human genome by using novel SAGE tags. Proc Natl Acad Sci USA 2002;99:12257-12262.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 12257-12262
    • Chen, J.1    Sun, M.2    Lee, S.3
  • 31
    • 0033853089 scopus 로고    scopus 로고
    • SAGEmap: A public gene expression resource
    • Lash AE, Tolstoshev CM, Wagner L et al. SAGEmap: a public gene expression resource. Genome Res 2000;10:1051-1060.
    • (2000) Genome Res , vol.10 , pp. 1051-1060
    • Lash, A.E.1    Tolstoshev, C.M.2    Wagner, L.3
  • 32
    • 0033231026 scopus 로고    scopus 로고
    • A public database for gene expression in human cancers
    • Lal A, Lash AE, Altschul SF et al. A public database for gene expression in human cancers. Cancer Res 1999;59:5403-5407.
    • (1999) Cancer Res , vol.59 , pp. 5403-5407
    • Lal, A.1    Lash, A.E.2    Altschul, S.F.3
  • 33
    • 0032979731 scopus 로고    scopus 로고
    • Dynamics of gene expression revealed by comparison of serial analysis of gene expression transcript profiles from yeast grown on two different carbon sources
    • Kal AJ, van Zonneveld AJ, Benes V et al. Dynamics of gene expression revealed by comparison of serial analysis of gene expression transcript profiles from yeast grown on two different carbon sources. Mol Biol Cell 1999;10:1859-1872.
    • (1999) Mol Biol Cell , vol.10 , pp. 1859-1872
    • Kal, A.J.1    Van Zonneveld, A.J.2    Benes, V.3
  • 34
    • 0037340843 scopus 로고    scopus 로고
    • Can transcriptome size be estimated from SAGE catalogs?
    • Stem MD, Anisimov SV, Boheler KR. Can transcriptome size be estimated from SAGE catalogs? Bioinformatics 2003;19:443-448.
    • (2003) Bioinformatics , vol.19 , pp. 443-448
    • Stem, M.D.1    Anisimov, S.V.2    Boheler, K.R.3
  • 35
    • 0032582513 scopus 로고    scopus 로고
    • Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4
    • Nichols J, Zevnik B, Anastassiadis K et al. Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4. Cell 1998;95:379-391.
    • (1998) Cell , vol.95 , pp. 379-391
    • Nichols, J.1    Zevnik, B.2    Anastassiadis, K.3
  • 36
    • 0033679346 scopus 로고    scopus 로고
    • Oct-4 expression in inner cell mass and trophectoderm of human blastocysts
    • Hansis C, Grifo JA, Krey LC. Oct-4 expression in inner cell mass and trophectoderm of human blastocysts. Mol Hum Reprod 2000;6:999-1004.
    • (2000) Mol Hum Reprod , vol.6 , pp. 999-1004
    • Hansis, C.1    Grifo, J.A.2    Krey, L.C.3
  • 37
    • 0031860739 scopus 로고    scopus 로고
    • Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases
    • Okano M, Xie S, Li E. Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases. Nat Genet 1998;19:219-220.
    • (1998) Nat Genet , vol.19 , pp. 219-220
    • Okano, M.1    Xie, S.2    Li, E.3
  • 39
    • 0030459140 scopus 로고    scopus 로고
    • The role of DNA methylation in cancer genetic and epigenetics
    • Laird PW, Jaenisch R. The role of DNA methylation in cancer genetic and epigenetics. Annu Rev Genet 1996;30:441-464.
    • (1996) Annu Rev Genet , vol.30 , pp. 441-464
    • Laird, P.W.1    Jaenisch, R.2
  • 40
    • 0037783427 scopus 로고    scopus 로고
    • Conservation of the heterochronic regulator Lin-28, its developmental expression and microRNA complementary sites
    • Moss EG, Tang L. Conservation of the heterochronic regulator Lin-28, its developmental expression and microRNA complementary sites. Dev Biol 2003;258:432-442.
    • (2003) Dev Biol , vol.258 , pp. 432-442
    • Moss, E.G.1    Tang, L.2
  • 41
    • 0027273372 scopus 로고
    • An octamer motif contributes to the expression of the retinoic acid-regulated zinc finger gene Rex-1 (Zfp-42) in F9 teratocarcinoma cells
    • Hosler BA, Rogers MB, Kozak CA et al. An octamer motif contributes to the expression of the retinoic acid-regulated zinc finger gene Rex-1 (Zfp-42) in F9 teratocarcinoma cells. Mol Cell Biol 1993;13:2919-2928.
    • (1993) Mol Cell Biol , vol.13 , pp. 2919-2928
    • Hosler, B.A.1    Rogers, M.B.2    Kozak, C.A.3
  • 42
    • 0035799309 scopus 로고    scopus 로고
    • Establishment of human embryonic stem cell-transfected clones carrying a marker for undifferentiated cells
    • Eiges R, Schuldiner M, Drukker M et al. Establishment of human embryonic stem cell-transfected clones carrying a marker for undifferentiated cells. Curr Biol 2001;11:514-518.
    • (2001) Curr Biol , vol.11 , pp. 514-518
    • Eiges, R.1    Schuldiner, M.2    Drukker, M.3
  • 43
    • 0037201565 scopus 로고    scopus 로고
    • Retinoic acid induces parietal endoderm but not primitive endoderm and visceral endoderm differentiation in F9 teratocarcinoma stem cells with a targeted deletion of the Rex-1 (Zfp-42) gene
    • Thompson JR, Gudas LJ. Retinoic acid induces parietal endoderm but not primitive endoderm and visceral endoderm differentiation in F9 teratocarcinoma stem cells with a targeted deletion of the Rex-1 (Zfp-42) gene. Mol Cell Endocrinol 2002;195:119-133.
    • (2002) Mol Cell Endocrinol , vol.195 , pp. 119-133
    • Thompson, J.R.1    Gudas, L.J.2
  • 44
    • 0028908976 scopus 로고
    • Sequence, genomic organization, and expression of the novel homeobox gene Hesxl
    • Thomas PQ, Johnson BV, Rathjen J et al. Sequence, genomic organization, and expression of the novel homeobox gene Hesxl. J Biol Chem 1995;270:3869-3875.
    • (1995) J Biol Chem , vol.270 , pp. 3869-3875
    • Thomas, P.Q.1    Johnson, B.V.2    Rathjen, J.3
  • 45
    • 0032055125 scopus 로고    scopus 로고
    • UTF1, a novel transcriptional coactivator expressed in pluripotent embryonic stem cells and extra-embryonic cells
    • Okuda A, Fukushima A, Nishimoto M et al. UTF1, a novel transcriptional coactivator expressed in pluripotent embryonic stem cells and extra-embryonic cells. EMBO J 1998;17:2019-2032.
    • (1998) EMBO J , vol.17 , pp. 2019-2032
    • Okuda, A.1    Fukushima, A.2    Nishimoto, M.3
  • 46
    • 0034805378 scopus 로고    scopus 로고
    • Identification of putative downstream genes of Oct-4 by suppression-subtractive hybridization
    • Du Z, Cong H, Yao Z. Identification of putative downstream genes of Oct-4 by suppression-subtractive hybridization. Biochem Biophys Res Commun 2001;282:701-706.
    • (2001) Biochem Biophys Res Commun , vol.282 , pp. 701-706
    • Du, Z.1    Cong, H.2    Yao, Z.3
  • 47
    • 0041560908 scopus 로고    scopus 로고
    • Molecular signature of human embryonic stem cells and its comparison with the mouse
    • Sato N, Sanjuan IM, Heke M et al. Molecular signature of human embryonic stem cells and its comparison with the mouse. Dev Biol 2003;260:404-413.
    • (2003) Dev Biol , vol.260 , pp. 404-413
    • Sato, N.1    Sanjuan, I.M.2    Heke, M.3
  • 48
    • 0037130207 scopus 로고    scopus 로고
    • A molecular programme for the specification of germ cell fate in mice
    • Saitou M, Barton SC, Surani MA. A molecular programme for the specification of germ cell fate in mice. Nature 2002;418:293-300.
    • (2002) Nature , vol.418 , pp. 293-300
    • Saitou, M.1    Barton, S.C.2    Surani, M.A.3
  • 49
    • 0037343917 scopus 로고    scopus 로고
    • Single-cell transcript analysis of pancreas development
    • Chiang MK, Melton DA. Single-cell transcript analysis of pancreas development. Dev Cell 2003;4:383-393.
    • (2003) Dev Cell , vol.4 , pp. 383-393
    • Chiang, M.K.1    Melton, D.A.2
  • 50
    • 0037417893 scopus 로고    scopus 로고
    • Molecular features of adult mouse small intestinal epithelial progenitors
    • Stappenbeck TS, Mills JC, Gordon JI. Molecular features of adult mouse small intestinal epithelial progenitors. Proc Natl Acad Sci USA 2003;100:1004-1009.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 1004-1009
    • Stappenbeck, T.S.1    Mills, J.C.2    Gordon, J.I.3
  • 51
    • 0037008488 scopus 로고    scopus 로고
    • Single-cell gene expression profiling
    • Levsky JM, Shenoy SM, Pezo RC et al. Single-cell gene expression profiling. Science 2002;297:836-840.
    • (2002) Science , vol.297 , pp. 836-840
    • Levsky, J.M.1    Shenoy, S.M.2    Pezo, R.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.