Genome-wide mapping of the ozone-responsive transcriptomes in rice panicle and seed tissues reveals novel insight into their regulatory events

Biotechnology Letters

Volumn 35, Issue 4, 2013, Pages 647-656

  Cho, Kyoungwon ^a,b   Shibato, Junko ^a,c   Kubo, Akihiro ^a   Kohno, Yoshihisa ^d   Satoh, Kouji ^e   Kikuchi, Shoshi ^e   Agrawal, Ganesh Kumar ^f   Sarkar, Abhijit ^f,g   Rakwal, Randeep ^c,f,h  

^a NATIONAL INSTITUTE FOR ENVIRONMENTAL STUDIES   (Japan)

^b Korea Basic Science Institute (KBSI)   (South Korea)

^c SHOWA UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^d CENTRAL RESEARCH INSTITUTE OF ELECTRIC POWER INDUSTRY   (Japan)

^e NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^f Research Laboratory for Biotechnology and Biochemistry   (Nepal)

^g BANARAS HINDU UNIVERSITY   (India)

^h UNIVERSITY OF TSUKUBA   (Japan)

Author keywords

DNA microarray; Grains; Oryza sativa L.; Ozone; Panicle

Indexed keywords

AGRICULTURAL ROBOTS; CELL SIGNALING; MAPPING; OZONE; TRANSCRIPTION;

AGRICULTURAL PRODUCTIONS; DIFFERENTIALLY EXPRESSED GENE; DNA MICRO-ARRAY; HIGH THROUGHPUT; ORYZA SATIVA L; PANICLE; REGULATORY PROCESS; TROPOSPHERIC OZONE;

GRAIN (AGRICULTURAL PRODUCT);

ORYZA SATIVA;

EID: 84874792541     PISSN: 01415492     EISSN: 15736776     Source Type: Journal    
DOI: 10.1007/s10529-012-1118-x     Document Type: Article

References (15)

1. Agrawal GK, Pedreschi R, Barkla BJ et al (2012) Translational plant proteomics: a perspective. J Proteomics 75(15): 4588-4601.
2. Altman N (2005) Replication, variation and normalisation in microarray experiments. Appl Bioinf 4: 33-44.
3. Cho K, Shibato J, Agrawal GK et al (2008) Integrated transcriptomics, proteomics, and metabolomics analyses to survey ozone responses in the leaves of rice seedling. J Proteome Res 7: 2980-2998.
4. Cho K, Tiwari S, Agrawal SB et al (2011) Troposphere ozone and plants: absorption, responses and consequences. Rev Environ Contam Toxicol 212: 61-111.
5. Das KC, Das CK (2000) Thioredoxin, a singlet oxygen quencher and hydroxyl radical scavenger: redox independent functions. Biochem Biophys Res Commun 277: 443-447.
6. Furutani I, Sukegawa S, Kyozuka J (2006) Genome-wide analysis of spatial and temporal gene expression in rice panicle development. Plant J 46: 503-511.
7. Kim TW, Wang ZY (2010) Brassinosteroid signal transduction from receptor kinases to transcription factors. Annu Rev Plant Biol 61: 681-704.
8. Martin-Magniette ML, Aubert J, Cabannes E, Daudin JJ (2005) Evaluation of the gene-specific dye bias in cDNA microarray experiments. Bioinformatics 21: 1995-2000.
9. Sarkar A, Agrawal SB (2012) Evaluating the response of two high-yielding Indian rice cultivars against ambient and elevated levels of ozone by using open top chambers. J Environ Manag 95: S19-S24.
10. Sarkar A, Rakwal R, Agrawal SB et al (2010) Investigating the impact of elevated levels of ozone on tropical wheat using integrated phenotypical, physiological, biochemical, and proteomics approaches. J Proteome Res 9: 4565-4584.
11. Simpson GG, Dean C (2002) Arabidopsis, the Rosetta stone of flowering time? Science 296: 285-289.
12. Suzuki Y, Mae T, Makino A (2008) RNA extraction from various recalcitrant plant tissues with a cetyltrimethylammonium bromide-containing buffer followed by an acid guanidium thiocyanate-phenol-chloroform treatment. Biosci Biotechnol Biochem 72: 1951-1953.
13. Wang D, Pan Y, Zhao X et al (2011) Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice. BMC Genomics 12: 149. doi: 10. 1186/1471-2164-12-149.
14. Zhou YL, Xu MR, Zhao MF et al (2010) Genome-wide gene responses in a transgenic rice line carrying the maize resistance gene Rxo1 to the rice bacterial streak pathogen Xanthomonas oryzae pv. oryzicola. BMC Genomics 11: 78.
15. Zhu X, Feng Z, Sun T et al (2011) Effects of elevated ozone concentration on yield of four Chinese cultivars of winter wheat under fully open-air field conditions. Global Change Biol 17: 2697-2706.