-
1
-
-
0346243805
-
Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios
-
Clark AG, Glanowski S, Nielsen R, Thomas PD, Kejariwal A, et al. (2003) Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios. Science 302: 1960-1963.
-
(2003)
Science
, vol.302
, pp. 1960-1963
-
-
Clark, A.G.1
Glanowski, S.2
Nielsen, R.3
Thomas, P.D.4
Kejariwal, A.5
-
2
-
-
20444430245
-
A scan for positively selected genes in the genomes of humans and chimpanzees
-
doi: 10.1371/journal.pbio.0030170
-
Nielsen R, Bustamante C, Clark AG, Glanowski S, Sackton TB, et al. (2005) A scan for positively selected genes in the genomes of humans and chimpanzees. PLoS Biol 3: e170 doi:10.1371/journal.pbio.0030170.
-
(2005)
PLoS Biol
, vol.3
-
-
Nielsen, R.1
Bustamante, C.2
Clark, A.G.3
Glanowski, S.4
Sackton, T.B.5
-
3
-
-
80053543434
-
Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection
-
George RD, McVicker G, Diederich R, Ng SB, MacKenzie AP, et al. (2011) Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection. Genome Res 21: 1686-1694.
-
(2011)
Genome Res
, vol.21
, pp. 1686-1694
-
-
George, R.D.1
McVicker, G.2
Diederich, R.3
Ng, S.B.4
MacKenzie, A.P.5
-
4
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218.
-
Nature
, vol.450
, pp. 203-218
-
-
-
6
-
-
32544445408
-
Evolution of reproductive proteins from animals and plants
-
Clark NL, Aagaard JE, Swanson WJ, (2006) Evolution of reproductive proteins from animals and plants. Reproduction 131: 11-22.
-
(2006)
Reproduction
, vol.131
, pp. 11-22
-
-
Clark, N.L.1
Aagaard, J.E.2
Swanson, W.J.3
-
7
-
-
0033214009
-
Interspecies chimeric sperm lysins identify regions mediating species-specific recognition of the abalone egg vitelline envelope
-
Lyon JD, Vacquier VD, (1999) Interspecies chimeric sperm lysins identify regions mediating species-specific recognition of the abalone egg vitelline envelope. Developmental Biology 214: 151-159.
-
(1999)
Developmental Biology
, vol.214
, pp. 151-159
-
-
Lyon, J.D.1
Vacquier, V.D.2
-
8
-
-
77951535386
-
A novel method to detect proteins evolving at correlated rates: identifying new functional relationships between coevolving proteins
-
Clark NL, Aquadro CF, (2010) A novel method to detect proteins evolving at correlated rates: identifying new functional relationships between coevolving proteins. Mol Biol Evol 27: 1152-1161.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1152-1161
-
-
Clark, N.L.1
Aquadro, C.F.2
-
9
-
-
68249132755
-
Coevolution of interacting fertilization proteins
-
doi: 10.1371/journal.pgen.1000570
-
Clark NL, Gasper J, Sekino M, Springer SA, Aquadro CF, et al. (2009) Coevolution of interacting fertilization proteins. PLoS Genet 5: e1000570 doi:10.1371/journal.pgen.1000570.
-
(2009)
PLoS Genet
, vol.5
-
-
Clark, N.L.1
Gasper, J.2
Sekino, M.3
Springer, S.A.4
Aquadro, C.F.5
-
11
-
-
0142060001
-
The species-specific egg receptor for sea urchin sperm adhesion is EBR1,a novel ADAMTS protein
-
Kamei N, Glabe CG, (2003) The species-specific egg receptor for sea urchin sperm adhesion is EBR1,a novel ADAMTS protein. Genes Dev 17: 2502-2507.
-
(2003)
Genes Dev
, vol.17
, pp. 2502-2507
-
-
Kamei, N.1
Glabe, C.G.2
-
12
-
-
42549131870
-
Mechanism of self-sterility in a hermaphroditic chordate
-
Harada Y, Takagaki Y, Sunagawa M, Saito T, Yamada L, et al. (2008) Mechanism of self-sterility in a hermaphroditic chordate. Science 320: 548-550.
-
(2008)
Science
, vol.320
, pp. 548-550
-
-
Harada, Y.1
Takagaki, Y.2
Sunagawa, M.3
Saito, T.4
Yamada, L.5
-
13
-
-
0019942692
-
A protein from abalone sperm dissolves the egg vitelline layer by a nonenzymatic mechanism
-
Lewis CA, Talbot CF, Vacquier VD, (1982) A protein from abalone sperm dissolves the egg vitelline layer by a nonenzymatic mechanism. Developmental Biology 92: 227-239.
-
(1982)
Developmental Biology
, vol.92
, pp. 227-239
-
-
Lewis, C.A.1
Talbot, C.F.2
Vacquier, V.D.3
-
15
-
-
0037123368
-
Full Length Sequence of VERL, the egg vitelline envelope receptor for abalone sperm lysin
-
Galindo BE, Moy GW, Swanson WJ, Vacquier VD, (2002) Full Length Sequence of VERL, the egg vitelline envelope receptor for abalone sperm lysin. Gene 288: 111-117.
-
(2002)
Gene
, vol.288
, pp. 111-117
-
-
Galindo, B.E.1
Moy, G.W.2
Swanson, W.J.3
Vacquier, V.D.4
-
16
-
-
0035138977
-
Abalone lysin: the dissolving and evolving sperm protein
-
Kresge N, Vacquier VD, Stout CD, (2001) Abalone lysin: the dissolving and evolving sperm protein. Bioessays 23: 95-103.
-
(2001)
Bioessays
, vol.23
, pp. 95-103
-
-
Kresge, N.1
Vacquier, V.D.2
Stout, C.D.3
-
17
-
-
0029841116
-
Evolution and systematics in Haliotidae (Mollusca: Gastropoda): inferences from DNA sequences of sperm lysin
-
Lee Y-H, Vacquier VD, (1995) Evolution and systematics in Haliotidae (Mollusca: Gastropoda): inferences from DNA sequences of sperm lysin. Marine Biology 124: 267-268.
-
(1995)
Marine Biology
, vol.124
, pp. 267-268
-
-
Lee, Y.-H.1
Vacquier, V.D.2
-
19
-
-
72649091351
-
ZP domain proteins in the abalone egg coat include a paralog of VERL under positive selection that binds lysin and 18-kDa sperm proteins
-
Aagaard JE, Vacquier VD, MacCoss MJ, Swanson WJ, (2010) ZP domain proteins in the abalone egg coat include a paralog of VERL under positive selection that binds lysin and 18-kDa sperm proteins. Mol Biol Evol 27: 193-203.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 193-203
-
-
Aagaard, J.E.1
Vacquier, V.D.2
MacCoss, M.J.3
Swanson, W.J.4
-
20
-
-
33751255409
-
Rapidly evolving zona pellucida domain proteins are a major component of the vitelline envelope of abalone eggs
-
Aagaard JE, Yi X, MacCoss MJ, Swanson WJ, (2006) Rapidly evolving zona pellucida domain proteins are a major component of the vitelline envelope of abalone eggs. Proc Natl Acad Sci U S A 103: 17302-17307.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 17302-17307
-
-
Aagaard, J.E.1
Yi, X.2
MacCoss, M.J.3
Swanson, W.J.4
-
21
-
-
17044393647
-
Zona pellucida domain proteins
-
Jovine L, Darie CC, Litscher ES, Wassarman PM, (2005) Zona pellucida domain proteins. Annual Review of Biochemistry 74: 83-114.
-
(2005)
Annual Review of Biochemistry
, vol.74
, pp. 83-114
-
-
Jovine, L.1
Darie, C.C.2
Litscher, E.S.3
Wassarman, P.M.4
-
22
-
-
79959450888
-
The molecular basis of sex: linking yeast to human
-
Swanson WJ, Aagaard JE, Vacquier VD, Monne M, Sadat Al Hosseini H, et al. (2011) The molecular basis of sex: linking yeast to human. Mol Biol Evol 28: 1963-1966.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 1963-1966
-
-
Swanson, W.J.1
Aagaard, J.E.2
Vacquier, V.D.3
Monne, M.4
Sadat Al Hosseini, H.5
-
23
-
-
57349125672
-
Crystal structure of the ZP-N domain of ZP3 reveals the core fold of animal egg coats
-
Monne M, Han L, Schwend T, Burendahl S, Jovine L, (2008) Crystal structure of the ZP-N domain of ZP3 reveals the core fold of animal egg coats. Nature 456: 653-657.
-
(2008)
Nature
, vol.456
, pp. 653-657
-
-
Monne, M.1
Han, L.2
Schwend, T.3
Burendahl, S.4
Jovine, L.5
-
24
-
-
0028815620
-
Structure of Saccharomyces cerevisiae alpha-agglutinin. Evidence for a yeast cell wall protein with multiple immunoglobulin-like domains with atypical disulfides
-
Chen MH, Shen ZM, Bobin S, Kahn PC, Lipke PN, (1995) Structure of Saccharomyces cerevisiae alpha-agglutinin. Evidence for a yeast cell wall protein with multiple immunoglobulin-like domains with atypical disulfides. J Biol Chem 270: 26168-26177.
-
(1995)
J Biol Chem
, vol.270
, pp. 26168-26177
-
-
Chen, M.H.1
Shen, Z.M.2
Bobin, S.3
Kahn, P.C.4
Lipke, P.N.5
-
25
-
-
0031037939
-
Positive Darwinian selection on two homologous fertilization proteins: what is the selective pressure driving their divergence?
-
Vacquier VD, Swanson WJ, Lee YH, (1997) Positive Darwinian selection on two homologous fertilization proteins: what is the selective pressure driving their divergence? Journal of Molecular Evolution 44: S15-S22.
-
(1997)
Journal of Molecular Evolution
, vol.44
-
-
Vacquier, V.D.1
Swanson, W.J.2
Lee, Y.H.3
-
26
-
-
0026574205
-
Sexual agglutination in budding yeasts: structure, function, and regulation of adhesion glycoproteins
-
Lipke PN, Kurjan J, (1992) Sexual agglutination in budding yeasts: structure, function, and regulation of adhesion glycoproteins. Microbiol Rev 56: 180-194.
-
(1992)
Microbiol Rev
, vol.56
, pp. 180-194
-
-
Lipke, P.N.1
Kurjan, J.2
-
27
-
-
34250780607
-
A biochemical guide to yeast adhesins: glycoproteins for social and antisocial occasions
-
Dranginis AM, Rauceo JM, Coronado JE, Lipke PN, (2007) A biochemical guide to yeast adhesins: glycoproteins for social and antisocial occasions. Microbiol Mol Biol Rev 71: 282-294.
-
(2007)
Microbiol Mol Biol Rev
, vol.71
, pp. 282-294
-
-
Dranginis, A.M.1
Rauceo, J.M.2
Coronado, J.E.3
Lipke, P.N.4
-
28
-
-
0035895505
-
The sequence of the human genome
-
Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, et al. (2001) The sequence of the human genome. Science 291: 1304-1351.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
-
29
-
-
33645885359
-
Defending the zygote: search for the ancestral animal block to polyspermy
-
Wong JL, Wessel GM, (2006) Defending the zygote: search for the ancestral animal block to polyspermy. Curr Top Dev Biol 72: 1-151.
-
(2006)
Curr Top Dev Biol
, vol.72
, pp. 1-151
-
-
Wong, J.L.1
Wessel, G.M.2
-
30
-
-
0037793328
-
Polyspermy prevention in marine invertebrates
-
Gould MC, Stephano JL, (2003) Polyspermy prevention in marine invertebrates. Microsc Res Tech 61: 379-388.
-
(2003)
Microsc Res Tech
, vol.61
, pp. 379-388
-
-
Gould, M.C.1
Stephano, J.L.2
-
31
-
-
0029119174
-
Structural features of the abalone egg extracellular matrix and its role in gamete interaction during fertilization
-
Mozingo NM, Vacquier VD, Chandler DE, (1995) Structural features of the abalone egg extracellular matrix and its role in gamete interaction during fertilization. Molecular Reproduction and Development 41: 493-502.
-
(1995)
Molecular Reproduction and Development
, vol.41
, pp. 493-502
-
-
Mozingo, N.M.1
Vacquier, V.D.2
Chandler, D.E.3
-
32
-
-
0003160461
-
The divergence of species-specific abalone sperm lysins is promoted by positive Darwinian selection
-
Lee YH, Vacquier VD, (1992) The divergence of species-specific abalone sperm lysins is promoted by positive Darwinian selection. Biological Bulletin (Woods Hole) 182: 97-104.
-
(1992)
Biological Bulletin (Woods Hole)
, vol.182
, pp. 97-104
-
-
Lee, Y.H.1
Vacquier, V.D.2
-
33
-
-
0347004637
-
Reassessing the molecular biology of sperm-egg recognition with mouse genetics
-
Dean J, (2004) Reassessing the molecular biology of sperm-egg recognition with mouse genetics. Bioessays 26: 29-38.
-
(2004)
Bioessays
, vol.26
, pp. 29-38
-
-
Dean, J.1
-
34
-
-
57749202026
-
Speciation and the evolution of gamete recognition genes: pattern and process
-
Palumbi SR, (2009) Speciation and the evolution of gamete recognition genes: pattern and process. Heredity 102: 66-76.
-
(2009)
Heredity
, vol.102
, pp. 66-76
-
-
Palumbi, S.R.1
-
35
-
-
0032566791
-
Evolution of gamete recognition proteins
-
Vacquier VD, (1998) Evolution of gamete recognition proteins. Science 281: 1995-1998.
-
(1998)
Science
, vol.281
, pp. 1995-1998
-
-
Vacquier, V.D.1
-
36
-
-
0036899166
-
Biological and biomedical implications of the co-evolution of pathogens and their hosts
-
Woolhouse ME, Webster JP, Domingo E, Charlesworth B, Levin BR, (2002) Biological and biomedical implications of the co-evolution of pathogens and their hosts. Nat Genet 32: 569-577.
-
(2002)
Nat Genet
, vol.32
, pp. 569-577
-
-
Woolhouse, M.E.1
Webster, J.P.2
Domingo, E.3
Charlesworth, B.4
Levin, B.R.5
-
37
-
-
0029061703
-
Extraordinary divergence and positive Darwinian selection in a fusagenic protein coating the acrosomal process of abalone spermatozoa
-
Swanson WJ, Vacquier VD, (1995) Extraordinary divergence and positive Darwinian selection in a fusagenic protein coating the acrosomal process of abalone spermatozoa. Proceedings of the National Academy of Sciences of the United States of America 92: 4957-4961.
-
(1995)
Proceedings of the National Academy of Sciences of the United States of America
, vol.92
, pp. 4957-4961
-
-
Swanson, W.J.1
Vacquier, V.D.2
-
38
-
-
0004216678
-
-
London: MacMillan and Co
-
Wallace AR (1889) Darwinism. London: MacMillan and Co. 494 p.
-
(1889)
Darwinism
, pp. 494
-
-
Wallace, A.R.1
-
40
-
-
0034970783
-
Costs of sexual interactions to females in Rambur's forktail damselfly, Ischnura ramburi (Zygoptera: Coenagrionidae)
-
Sirot LK, Brockmann HJ, (2001) Costs of sexual interactions to females in Rambur's forktail damselfly, Ischnura ramburi (Zygoptera: Coenagrionidae). Animal Behaviour 61: 415-424.
-
(2001)
Animal Behaviour
, vol.61
, pp. 415-424
-
-
Sirot, L.K.1
Brockmann, H.J.2
-
41
-
-
0029661730
-
The significance of female mimicry in male contests
-
Saetre G-P, Slagsvold T, (1996) The significance of female mimicry in male contests. American Naturalist 147: 981-995.
-
(1996)
American Naturalist
, vol.147
, pp. 981-995
-
-
Saetre, G.-P.1
Slagsvold, T.2
-
43
-
-
0000026268
-
Female dimorphism and mating behavior in a damselfly, Ischnura ramburi: females mimicking males
-
Robertson HM, (1985) Female dimorphism and mating behavior in a damselfly, Ischnura ramburi: females mimicking males. Animal Behaviour 33: 805-809.
-
(1985)
Animal Behaviour
, vol.33
, pp. 805-809
-
-
Robertson, H.M.1
-
44
-
-
0034919056
-
Decoy receptors: a strategy to regulate inflammatory cytokines and chemokines
-
Mantovani A, Locati M, Vecchi A, Sozzani S, Allavena P, (2001) Decoy receptors: a strategy to regulate inflammatory cytokines and chemokines. Trends Immunol 22: 328-336.
-
(2001)
Trends Immunol
, vol.22
, pp. 328-336
-
-
Mantovani, A.1
Locati, M.2
Vecchi, A.3
Sozzani, S.4
Allavena, P.5
-
45
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Force A, Lynch M, Pickett FB, Amores A, Yan YL, et al. (1999) Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151: 1531-1545.
-
(1999)
Genetics
, vol.151
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.L.5
-
46
-
-
0033800170
-
Maximum-likelihood analysis of molecular adaptation in abalone sperm lysin reveals variable selective pressures among lineages and sites
-
Yang Z, Swanson WJ, Vacquier VD, (2000) Maximum-likelihood analysis of molecular adaptation in abalone sperm lysin reveals variable selective pressures among lineages and sites. Molecular Biology and Evolution 17: 1446-1455.
-
(2000)
Molecular Biology and Evolution
, vol.17
, pp. 1446-1455
-
-
Yang, Z.1
Swanson, W.J.2
Vacquier, V.D.3
-
47
-
-
84859551640
-
Evolutionary rate covariation reveals shared functionality and co-expression of genes
-
Clark NL, Alani E, Aquadro CF, (2012) Evolutionary rate covariation reveals shared functionality and co-expression of genes. Genome Research.
-
(2012)
Genome Research
-
-
Clark, N.L.1
Alani, E.2
Aquadro, C.F.3
-
48
-
-
0031960185
-
Synonymous and nonsynonymous rate variation in nuclear genes of mammals
-
Yang Z, Nielsen R, (1998) Synonymous and nonsynonymous rate variation in nuclear genes of mammals. Journal of Molecular Evolution 46: 409-418.
-
(1998)
Journal of Molecular Evolution
, vol.46
, pp. 409-418
-
-
Yang, Z.1
Nielsen, R.2
-
50
-
-
79961135005
-
-
R Development Core Team, Vienna, Austria: R Foundation for Statistical Computinhg
-
R Development Core Team (2011) R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computinhg.
-
(2011)
R: A Language and Environment for Statistical Computing
-
-
-
51
-
-
16344378246
-
Bayes empirical bayes inference of amino acid sites under positive selection
-
Yang Z, Wong WS, Nielsen R, (2005) Bayes empirical bayes inference of amino acid sites under positive selection. Mol Biol Evol 22: 1107-1118.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1107-1118
-
-
Yang, Z.1
Wong, W.S.2
Nielsen, R.3
-
52
-
-
79954580509
-
The PyMOL Molecular Graphics System, Version 1.3r1
-
Schrodinger LLC, (2010) The PyMOL Molecular Graphics System, Version 1.3r1.
-
(2010)
-
-
Schrodinger, L.L.C.1
-
53
-
-
0034628886
-
The high resolution crystal structure of green abalone sperm lysin: implications for species-specific binding of the egg receptor
-
Kresge N, Vacquier VD, Stout CD, (2000) The high resolution crystal structure of green abalone sperm lysin: implications for species-specific binding of the egg receptor. Journal of Molecular Biology 296: 1225-1234.
-
(2000)
Journal of Molecular Biology
, vol.296
, pp. 1225-1234
-
-
Kresge, N.1
Vacquier, V.D.2
Stout, C.D.3
-
54
-
-
33847371098
-
Portable 24-analyte surface plasmon resonance instruments for rapid, versatile biodetection
-
Chinowsky TM, Soelberg SD, Baker P, Swanson NR, Kauffman P, et al. (2007) Portable 24-analyte surface plasmon resonance instruments for rapid, versatile biodetection. Biosens Bioelectron 22: 2268-2275.
-
(2007)
Biosens Bioelectron
, vol.22
, pp. 2268-2275
-
-
Chinowsky, T.M.1
Soelberg, S.D.2
Baker, P.3
Swanson, N.R.4
Kauffman, P.5
-
55
-
-
0027640330
-
Abalone sperm lysin: unusual mode of evolution of a gamete recognition protein
-
Vacquier VD, Lee YH, (1993) Abalone sperm lysin: unusual mode of evolution of a gamete recognition protein. Zygote 1: 181-196.
-
(1993)
Zygote
, vol.1
, pp. 181-196
-
-
Vacquier, V.D.1
Lee, Y.H.2
-
56
-
-
34247485014
-
Genetic differentiation by sexual conflict
-
Hayashi TI, Vose M, Gavrilets S, (2007) Genetic differentiation by sexual conflict. Evolution 61: 516-529.
-
(2007)
Evolution
, vol.61
, pp. 516-529
-
-
Hayashi, T.I.1
Vose, M.2
Gavrilets, S.3
|